mRNA_H-elongata_contig11335.1077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11335.1077.1
Unique NamemRNA_H-elongata_contig11335.1077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A6H5JQD1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQD1_9PHAE)

HSP 1 Score: 468 bits (1205), Expect = 4.500e-162
Identity = 243/362 (67.13%), Postives = 290/362 (80.11%), Query Frame = 1
Query:   13 FRLSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPDMEQRGVEFHKELALKLEECAMALR 1098
            F LS EALASIADLDDHP+ED DAARADRMLA+ ES+P+ ER+GM L D E +R  PL ERLA+LQ LW VRQ ELREAYDA+PKV+E+L++RI++L + DA++ AL   L+DLEDLL+DIDMARDFHT+GGFP L S L  S  E VRE+ AW +GTAVKN+PE+QLWVLEDGPDS+PS L LLL NA  A T +LRSK+VYALSAC++NN DVQLQFG+  GE VL+ +YDA GSD RV+IK LTL+SDLL EAARGSPAA LA +PVG+TA+SGG WC RVDEAL+   SP ALEKA++A+ S  PSCR+QF +L+TK  +EGLAQQCRTS     E    E+HKEL  KLEECA+ALR
Sbjct:   41 FDLSTEALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDL-DAEALRSKPLAERLAELQGLWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMARDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPEHQLWVLEDGPDSQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRIKTLTLMSDLLQEAARGSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAALEKAIEAVQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEEYHKELTQKLEECAVALR 401          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A835Z7K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K3_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.070e-35
Identity = 125/376 (33.24%), Postives = 171/376 (45.48%), Query Frame = 1
Query:   19 LSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGP----DSKPS-----------------------------------------------------ALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVL----AMLYDAHGSDPR-VKIKILTLLSDLLNEAAR--GSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSP---VALEKALDALMSLAPSC 945
            L +    SI  +DDHPV+DT  AR  RML +   LP+ E+E M    L+ I  +   ER   LQ LW  RQAEL+E Y  +P   ++L   I +LR   + +  L+  L DLED L+D+DMARDFHTLGG+  L + L    + +VRE  AWVIGTAVKN  E   W LE GP    D+  S                                                     A+D LL   A A  + L+ K +YAL++ + +N+  Q  F    G   L    A   D  G+  R +  K +TL+SD++ + A   GS   A+A            +WC  +   L +  +      LE+ALDA + LAP C
Sbjct:   91 LEKRTADSIRGIDDHPVQDTPEARTQRMLEALLELPREEQERM---QLDAILALDPSERPPALQALWERRQAELKEIYAGMPTPAKILGSLIAILRSEASGDAVLLDALLDLEDHLSDVDMARDFHTLGGWHPLQALLHAERAPAVREHAAWVIGTAVKNVIEFHGWALETGPAAAADASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVAGAGDGLNAIDRLLECVADARHAGLQGKALYALASALRHNARAQAHFVTTGGLDALRNAAATAADDGGAAARGLLTKAITLVSDIVADEAHEEGSGGGAVA-----AGVARDERWCVLLHALLLRADAARGGTQLERALDAALVLAPLC 458          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A7R9U9J5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9J5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.010e-24
Identity = 98/320 (30.63%), Postives = 150/320 (46.88%), Query Frame = 1
Query:    7 GMFRLSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAV------AATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPVGTTATSGG----QWCNRVDE---ALKQTSSPVALEKALDALM 927
            G   L+E  + +     + P    DA R + M  S   LP  E    G+   E        +R+     +W  RQ +LREA +++     + ++RI VL   D+SE  ++  L  LED L DIDMARDFHT+GG+P LT  L +S++E VR   A V+G  V+N PE Q WV E    S     +  + +  V      A+T+  +SK + ALS  + N+ +    F  + G   L  L D    D R+ ++ + ++SDL  EAA         ++        GG    +WC R ++   A K   +   L +A+  L+
Sbjct:   72 GAQDLTETQVVATDSAAEEPASAVDAGR-EMMKESLLKLPDAELARYGVTHAELSTPGAWEDRI---DGIWQKRQQDLREAIESMGSHVNIFLERIMVLSAADSSEEDVMKVLLQLEDDLMDIDMARDFHTVGGWPALTGLLADSHAEDVRCQAALVVGNTVRNTPEFQAWVSEVPMGSAADVEEATMMHLLVSMMNSSASTAKEQSKALSALSGALYNHVENLQLFADLDGSAKLLALLDDAVED-RLSLRAIRIVSDLAFEAAESGDEELKGLL--------GGIFDARWCRRTEDLASAAKGAGTDDRLSEAVSQLI 378          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: W7TQS8_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQS8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.170e-20
Identity = 112/384 (29.17%), Postives = 162/384 (42.19%), Query Frame = 1
Query:   85 ARADRMLASFESLPKHEREGMGLWDL----------------EGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLV-ESNSESVREM---GAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSS---------LRSKIVYALSACVSNNSDVQLQFGAMQGETVLAML------------YDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPV----------------GTTATSGGQWCNRVDEALKQT------SSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPDMEQRGVE 1047
            +R   ML     LP  ER  MG+  L                EG  +        +++ LWA RQ  L +AY+ + K  E L + I VL++    E  ++  L +LED L+D+DMA+DF+TLGG+P+L S L  E   E  RE+    AWV+G AVKN    Q WVLE G +   SAL  LL       T +         L  K VYA+++    N  VQ +     G  VL  L            +   G    + +K++    DL  EA + + AAAL +                   G T+ +   WC  +   L++           ALE  L+A+  L   C  Q +  E    VE L ++ R     +  + GV+
Sbjct:  174 SRRGTMLKVLSGLPPQERASMGIDSLLASRPRAGEALGEEVVEGEEREEERAFWKQVETLWAERQDLLLQAYENMLKPAEELGRLIGVLKE--GGEEEVMRALMELEDWLSDVDMAQDFYTLGGWPLLVSKLGWEGGREGGREVQWRAAWVVGNAVKNDRHFQAWVLEGGKEGGASALTRLLTICREGGTEAWGEGEEEEELLRKAVYAVTSAARGNPAVQAKLVEEGGLEVLGHLLHSSVPPSPGSSHQRKGQRRALCLKLIAFAQDLALEA-KQAVAAALEVAEARHPPSIXXXXXXXLLAGVTSPA---WCEGILGLLEEVVGGEGGREARALEGVLEAMQLLHVDCVRQGRWEEGGREVERLLRRAREVVEEEDWKEGVD 551          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A1W0A7I5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7I5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.060e-19
Identity = 87/287 (30.31%), Postives = 140/287 (48.78%), Query Frame = 1
Query:  160 LEGIRKMPLYERLAK------LQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDP--DASETA--LVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELET-KENVE 987
            L+G+     Y +L+K      +  LW  RQAEL+EA +AI      +   I+ L  P  DA+  A  L+++L  LE  + DID ARDF+T+GG    T  L+ S+   VR   AWV+G+A+K+  + Q W LE G  + P  LD L          +++ K +YALSA + +N+  Q  F   +G T+L  L  A  +   +++K L  L  LL E       + LA +    +      +C    + L  + SP    + ++ ++    S   +  ++ T +EN+E
Sbjct:  153 LDGMNIQQAYSKLSKEEFAAYISKLWKARQAELKEASEAIRNEGLYMQNLIDTLLSPAPDANTYAKGLLSSLEKLEWEVQDIDKARDFNTMGGL-FATIQLLNSSDLEVRSQAAWVVGSAIKHFQDAQTWALEAG--AMPPLLDALSTINNSKQHFNMQRKALYALSALLQHNTKCQSVFVQNEGVTILTKLAGATMAPTPLRLKALLALHHLLVEYQHDQSNSVLAEI---NSVIHSSSYCTVARDVLNPSLSPKQALQVMEIMVETLASPPSRCNQVITGEENIE 433          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A7S2RJU1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJU1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.980e-18
Identity = 80/243 (32.92%), Postives = 119/243 (48.97%), Query Frame = 1
Query:  100 MLASFESLPKHEREGMGLWDL--EGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHT-LGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDG-------PDSKPSALDLLLRNAAVAATSSLR---SKIVYALSACVSNNSDVQLQFGAMQG----ETVLAMLYDAHGSDPRVKIKILTLLSDLLNE 777
            M+ SF  LP  E+E MG   L  EG+    +     K+  LW  RQ EL+ A +A+ +  + L   I  +R  D  E ++   L+DLE+ L+D+DMARD H  LGG+P L   L    S  +R   A VIGTA+KN+P  Q W+LE         P    +AL  LL       T  ++    + +YAL++ + +N   Q  F  + G    + +L    D    +P +  K+  L+ D+L E
Sbjct:   86 MIRSFLRLPLAEQERMGFTSLYQEGMLLDDIDSDALKV--LWEQRQEELKAAMEAMQEAADTLSSIIRQIRSGD--EESVEAALADLEEHLSDVDMARDLHNALGGWPPLVRLLSSDQSPRIRAGAALVIGTAIKNEPVFQSWILESAAESVDVNPQQNETALSSLLGMLEEQGTGDVQVMHRRSMYALASALRHNLRNQAAFMELGGLERLQALLVKSCDGGLENPALVSKLAALVFDVLEE 324          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A7S2FHY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHY2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-17
Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   76 TDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERL-AKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDP----DASETALVTTLSDLEDLLTDIDMARDFH-TLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLE 528
            T ++ ++ M+ +  +LP  E++ +G   L    K    E L A L+ LW VRQ EL EA  A  +  + L   I  L+       A +  ++  L+ LED L+D+DMARDFH  LGG+P LT+ L+ + S  VR   A V+GTAVKNQ E Q W+LE
Sbjct:   44 TVSSPSELMIRTLSALPVVEQDRIGFTALMDKSKASGEEALEADLRSLWEVRQVELEEAMAATEESADFLAALIKTLKSHVDSNSADDETVLDALNGLEDHLSDMDMARDFHDALGGWPSLTNLLLPTQSLQVRAAAALVMGTAVKNQDEFQGWILE 200          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: T0QUY5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QUY5_SAPDV)

HSP 1 Score: 93.6 bits (231), Expect = 2.760e-17
Identity = 88/296 (29.73%), Postives = 131/296 (44.26%), Query Frame = 1
Query:  160 LEGIRKMPLYERLAK------LQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNE-AARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPD 1026
            L+GI     +  L+K      ++ LW  RQAEL+EA +AI    + +   I+ L  P      ++  L+ LE  + D+D ARDF+TLGG  + T   + +    VR    WV+G+AVK+  E Q W L+ G  + P  L+ L       A  +++ K +YALSA +  N+  Q  F +  G  +L  L     +  ++++K + +L  LL E AA  S AA +      +            D  L        +E    ALMS   SC            VE L    RT  S D
Sbjct:  170 LDGINIHEAHAHLSKEAFAAYVEKLWKARQAELKEASEAIRNEAQYMQTLIDALLAPTTPTDDVLDALTQLEWEVQDLDKARDFNTLGGLAV-TVQFLNATDLDVRAQAMWVVGSAVKHFEEAQTWALQAG--AVPHLLESLAMPLQDKAVVAMQRKALYALSALIQGNAKCQAVFLSQDGIRILNALAANTEAPLQLRLKAVLVLHHLLAEHAADPSRAADIHAAIHASDIYCAATAALLTDPTLTPQVGLQVMEALAQALMSPPSSCTAAITTPTVAARVEALDTAWRTDPSLD 462          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A067CKG1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKG1_SAPPC)

HSP 1 Score: 93.2 bits (230), Expect = 3.510e-17
Identity = 87/296 (29.39%), Postives = 134/296 (45.27%), Query Frame = 1
Query:  160 LEGIRKMPLYERLAK------LQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNE-AARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPD 1026
            L+GI     +  L+K      ++ LW  RQAEL+EA +AI    + +   I+ L  P      ++  L+ LE  + D+D ARDF+TLGG  ++T   + +   +VR    WV+G+A+K+  E Q W L+ G  + P  L  L    +  A  +++ K +YALSA + +N+  Q    A  G  +L  L     +  ++++K + +L  LL E AA  S AA +      T A          D  L        +E    ALMS    C           +V+ L    RT  S D
Sbjct:  155 LDGINIHDAHAHLSKEAFAAYVEKLWKARQAELKEASEAIRNEAKYMQTLIDALLAPTTPTDDVLDALTKLEWEVQDLDKARDFNTLGGL-VVTVQFLNATDLAVRAQAMWVVGSAIKHFEEAQNWALQAG--AVPHLLQSLAMPISDKAVVAMQRKALYALSALLQSNAKCQAVLLAQDGVRILNALAANANAPLQLRLKAVLVLHHLLAEHAADPSRAADVHAAVHATDAYCAATAALLTDPTLTPKLGLQVMEALAQALMSPPSKCTAALTTPAVAAHVKALDTAWRTDPSLD 447          
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: B7FVZ2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVZ2_PHATC)

HSP 1 Score: 93.2 bits (230), Expect = 4.440e-17
Identity = 123/418 (29.43%), Postives = 179/418 (42.82%), Query Frame = 1
Query:   97 RMLASFESLPKHEREGMG---------LWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINV------LRDP-----DASETALVTTLSDLEDLLTDIDMARDFHTLGGFPIL----------------------TSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLED---GPDSKPS------------ALDLLLRNAAVAATS----SLRSKIVYALSACVSNNSDVQLQFG---------AMQGETVLAMLYDAHGSD---PRVKIKILTLLSDLLNEA--ARGSPAAALA--------IVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENV-EGLAQQCRTSASPDMEQRGVEFHKELALKLEECAMALR 1098
            +M  +  SLP+ E+  MG         L  L   ++     R+A+L   W  RQAELRE + A  + D   + R  +      LRDP     D S++ +V+ L DLED L D+DMARDFHTLGG+P+L                      TST   S+  S++   AWV+GTAVKN  E   W LE+   G +S  +             LD  L +     TS     L+ K +YAL + +  N+  Q +F          A +  T+LA   D  G      ++  +++ L +DLL EA      P  A A        +     T+ +   WC+ +  AL+Q   P   E AL  +++LA  C   + +L   E V   +  +C    + D       FH+E A    E    LR
Sbjct:  130 KMHETLTSLPEDEQARMGGIPALPGSTLSSLTPEQREAFATRMAQL---WEERQAELRE-FQAEFEADLPAILRTRIAQLQDYLRDPSADALDPSQSIIVSVLRDLEDQLVDLDMARDFHTLGGWPVLVALVTDDAHQPPFWQQSPNQTDTSTETASHVRSIQAHAAWVLGTAVKNTGEFAPWALEELTLGNESSIARQTIATTSTLRVVLDQFLASTLPQETSPALEQLQVKTLYALGSLLRGNALAQARFLRDYHGPDQLASRVNTLLAT-GDVRGVSRHTTKLTNRLMALATDLLAEANAVTSQPEHASAEPQSKQRFLSDELITSFTTQPWCSSLLTALEQ---PPLQETALTVVVALAAHC--DWDDLRLVEEVLVDIRAKCHGKDTGDNASPEDSFHEERASLASEALQLLR 537          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD1_9PHAE4.500e-16267.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7K3_9STRA1.070e-3533.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U9J5_9STRA1.010e-2430.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TQS8_9STRA5.170e-2029.17Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A1W0A7I5_9STRA2.060e-1930.31Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2RJU1_9STRA1.980e-1832.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FHY2_9STRA1.220e-1740.13Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
T0QUY5_SAPDV2.760e-1729.73Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067CKG1_SAPPC3.510e-1729.39Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
B7FVZ2_PHATC4.440e-1729.43Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11335contigH-elongata_contig11335:535..2215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.0
Seed ortholog evalue4e-129
Seed eggNOG ortholog2880.D7FW70
KEGG koko:K14001,ko:K15196
KEGG Pathwayko04141,map04141
EggNOG free text desc.adenyl-nucleotide exchange factor activity
EggNOG OGsCOG0197@1,KOG2160@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-01_003620.1
Exons2
Model size1101
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11335.1077.1prot_H-elongata_contig11335.1077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11335 544..2215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.7147048-UTR-H-elongata_contig11335:534..5431622929653.7147048-UTR-H-elongata_contig11335:534..543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11335 535..543 +
1691679106.934555-UTR-H-elongata_contig11335:534..5431691679106.934555-UTR-H-elongata_contig11335:534..543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11335 535..543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.7343533-CDS-H-elongata_contig11335:543..10621622929653.7343533-CDS-H-elongata_contig11335:543..1062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 544..1062 +
1691679106.9445937-CDS-H-elongata_contig11335:543..10621691679106.9445937-CDS-H-elongata_contig11335:543..1062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 544..1062 +
1622929653.7557585-CDS-H-elongata_contig11335:1642..22151622929653.7557585-CDS-H-elongata_contig11335:1642..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 1643..2215 +
1691679106.9521172-CDS-H-elongata_contig11335:1642..22151691679106.9521172-CDS-H-elongata_contig11335:1642..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 1643..2215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11335.1077.1

>prot_H-elongata_contig11335.1077.1 ID=prot_H-elongata_contig11335.1077.1|Name=mRNA_H-elongata_contig11335.1077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=364bp
MFRLSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWD
LEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRD
PDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVR
EMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRS
KIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLL
SDLLNEAARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEK
ALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPDMEQRGVEFHKE
LALKLEECAMALR*
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mRNA from alignment at H-elongata_contig11335:535..2215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11335.1077.1 ID=mRNA_H-elongata_contig11335.1077.1|Name=mRNA_H-elongata_contig11335.1077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-elongata_contig11335:535..2215+ (Himanthalia elongata Himel1 dioecious)
GAAGGTGGAATGTTCCGACTAAGCGAGGAGGCGTTAGCATCCATTGCCGA CCTGGATGACCACCCCGTTGAAGACACCGATGCCGCCCGAGCTGACCGCA TGCTGGCGTCTTTTGAAAGCCTCCCCAAGCACGAGCGTGAAGGCATGGGT TTGTGGGACCTAGAAGGTATACGCAAAATGCCACTCTACGAGCGATTAGC GAAGCTTCAAGATTTATGGGCCGTCCGTCAAGCAGAGCTGCGGGAGGCGT ATGACGCAATCCCGAAGGTGGACGAAGTCCTCGTCAAAAGGATCAATGTG CTGCGGGACCCCGACGCGTCAGAGACCGCACTGGTGACCACCCTCTCTGA TTTGGAGGATCTTCTGACAGACATTGACATGGCTCGAGATTTTCATACTC TCGGAGGGTTTCCAATACTCACGTCAACGCTGGTCGAATCCAACTCGGAG AGCGTCCGTGAGATGGGAGCCTGGGTGATTGGCACAGCGGTCAAGAACCA ACCCGAAAATCAGCTGTGGGTGTTGGAGGTGAGACTCCTCGTAGTCACGG GGTGTTACTCAAAAAGAAGGGAATGCCCGAGACGTTTTCCCTAAACTCAA GACATTTGGCCCCTGGGACATTTCCACAAATTAAAACTTTTCAGGATTAC TGCATGTCAATGGACTAGAGATATCCTCCGTTTGTATGTAGAACCCTTCA GCCTTCTGTTAATCAGGTATAATACCAGTCGCTTCCTAGAACGCGCGACG TTCAACTTTTCATCAAGTTATCAAAGCGAACGACTTCAACCAAGCTAATT GAGGACCTGTACTTCGTAAGCTACCTGATATATACATATATAAATACTCA CTTGTGACAAATGTTTTCTACGCTGTAGCTGCTGCGGGAATGACGTCCAA TCAGTCTAACTTGAAACAAACAGAAGTGGGAACGAAGACGCTAGGCATAA CATGCAAGTATGCAAAGTTCCTGGTATACTTGTGTTCTAGAAGCCTCGCG TTGCGTTCGATTCTGTACGGTTGGCCTCTGCTTTCTTCGCTAAAATCGTA AGATCCTCTTCGTTGCCGTCATTTCGTGTTGTGTTATGTTCACTTACAGT CAAACAAGGACGGCCCCGACTCCAAGCCCTCAGCGCTGGATCTGTTGCTG AGAAATGCTGCTGTAGCGGCAACCTCCAGTCTTCGGAGCAAGATTGTCTA CGCGTTATCAGCGTGCGTGAGTAATAACAGTGACGTTCAGCTTCAGTTTG GCGCGATGCAGGGCGAGACAGTGCTTGCGATGCTCTACGATGCTCACGGA TCGGATCCCCGCGTCAAAATAAAGATATTGACCCTCTTATCCGATTTGCT CAACGAGGCTGCGCGAGGTTCACCGGCGGCTGCACTGGCGATTGTTCCTG TCGGTACAACGGCCACATCTGGCGGACAATGGTGCAATCGAGTAGATGAA GCATTGAAACAGACTTCTTCCCCAGTTGCGTTGGAAAAAGCACTCGATGC TCTAATGTCTCTGGCCCCTTCATGTAGAGAGCAGTTCAAGGAATTGGAGA CGAAGGAAAACGTAGAGGGGCTCGCGCAACAGTGCCGTACGTCAGCTTCG CCTGACATGGAACAAAGGGGGGTGGAATTCCACAAGGAATTGGCACTCAA ACTAGAGGAGTGTGCAATGGCTTTGCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig11335:535..2215+

>mRNA_H-elongata_contig11335.1077.1 ID=mRNA_H-elongata_contig11335.1077.1|Name=mRNA_H-elongata_contig11335.1077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2184bp|location=Sequence derived from alignment at H-elongata_contig11335:535..2215+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCGACTAAGCGAGGAGGCGTTAGCATCCATTGCCGACCTGGATGA
CCACCCCGTTGAAGACACCGATGCCGCCCGAGCTGACCGCATGCTGGCGT
CTTTTGAAAGCCTCCCCAAGCACGAGCGTGAAGGCATGGGTTTGTGGGAC
CTAGAAGGTATACGCAAAATGCCACTCTACGAGCGATTAGCGAAGCTTCA
AGATTTATGGGCCGTCCGTCAAGCAGAGCTGCGGGAGGCGTATGACGCAA
TCCCGAAGGTGGACGAAGTCCTCGTCAAAAGGATCAATGTGCTGCGGGAC
CCCGACGCGTCAGAGACCGCACTGGTGACCACCCTCTCTGATTTGGAGGA
TCTTCTGACAGACATTGACATGGCTCGAGATTTTCATACTCTCGGAGGGT
TTCCAATACTCACGTCAACGCTGGTCGAATCCAACTCGGAGAGCGTCCGT
GAGATGGGAGCCTGGGTGATTGGCACAGCGGTCAAGAACCAACCCGAAAA
TCAGCTGTGGGTGTTGGAGATGTTCCGACTAAGCGAGGAGGCGTTAGCAT
CCATTGCCGACCTGGATGACCACCCCGTTGAAGACACCGATGCCGCCCGA
GCTGACCGCATGCTGGCGTCTTTTGAAAGCCTCCCCAAGCACGAGCGTGA
AGGCATGGGTTTGTGGGACCTAGAAGGTATACGCAAAATGCCACTCTACG
AGCGATTAGCGAAGCTTCAAGATTTATGGGCCGTCCGTCAAGCAGAGCTG
CGGGAGGCGTATGACGCAATCCCGAAGGTGGACGAAGTCCTCGTCAAAAG
GATCAATGTGCTGCGGGACCCCGACGCGTCAGAGACCGCACTGGTGACCA
CCCTCTCTGATTTGGAGGATCTTCTGACAGACATTGACATGGCTCGAGAT
TTTCATACTCTCGGAGGGTTTCCAATACTCACGTCAACGCTGGTCGAATC
CAACTCGGAGAGCGTCCGTGAGATGGGAGCCTGGGTGATTGGCACAGCGG
TCAAGAACCAACCCGAAAATCAGCTGTGGGTGTTGGAGGACGGCCCCGAC
TCCAAGCCCTCAGCGCTGGATCTGTTGCTGAGAAATGCTGCTGTAGCGGC
AACCTCCAGTCTTCGGAGCAAGATTGTCTACGCGTTATCAGCGTGCGTGA
GTAATAACAGTGACGTTCAGCTTCAGTTTGGCGCGATGCAGGGCGAGACA
GTGCTTGCGATGCTCTACGATGCTCACGGATCGGATCCCCGCGTCAAAAT
AAAGATATTGACCCTCTTATCCGATTTGCTCAACGAGGCTGCGCGAGGTT
CACCGGCGGCTGCACTGGCGATTGTTCCTGTCGGTACAACGGCCACATCT
GGCGGACAATGGTGCAATCGAGTAGATGAAGCATTGAAACAGACTTCTTC
CCCAGTTGCGTTGGAAAAAGCACTCGATGCTCTAATGTCTCTGGCCCCTT
CATGTAGAGAGCAGTTCAAGGAATTGGAGACGAAGGAAAACGTAGAGGGG
CTCGCGCAACAGTGCCGTACGTCAGCTTCGCCTGACATGGAACAAAGGGG
GGTGGAATTCCACAAGGAATTGGCACTCAAACTAGAGGAGTGTGCAATGG
CTTTGCGATGAGACGGCCCCGACTCCAAGCCCTCAGCGCTGGATCTGTTG
CTGAGAAATGCTGCTGTAGCGGCAACCTCCAGTCTTCGGAGCAAGATTGT
CTACGCGTTATCAGCGTGCGTGAGTAATAACAGTGACGTTCAGCTTCAGT
TTGGCGCGATGCAGGGCGAGACAGTGCTTGCGATGCTCTACGATGCTCAC
GGATCGGATCCCCGCGTCAAAATAAAGATATTGACCCTCTTATCCGATTT
GCTCAACGAGGCTGCGCGAGGTTCACCGGCGGCTGCACTGGCGATTGTTC
CTGTCGGTACAACGGCCACATCTGGCGGACAATGGTGCAATCGAGTAGAT
GAAGCATTGAAACAGACTTCTTCCCCAGTTGCGTTGGAAAAAGCACTCGA
TGCTCTAATGTCTCTGGCCCCTTCATGTAGAGAGCAGTTCAAGGAATTGG
AGACGAAGGAAAACGTAGAGGGGCTCGCGCAACAGTGCCGTACGTCAGCT
TCGCCTGACATGGAACAAAGGGGGGTGGAATTCCACAAGGAATTGGCACT
CAAACTAGAGGAGTGTGCAATGGCTTTGCGATGA
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