mRNA_H-elongata_contig11309.1062.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: D8LJS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS4_ECTSI) HSP 1 Score: 154 bits (390), Expect = 5.210e-46 Identity = 79/92 (85.87%), Postives = 83/92 (90.22%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE----ATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
KIKSAGLAGALAYGGTELAFW+ISVPLAVVGY QTTGEWLDLTTLEGKE+ GFLTFARL VPLRIALALALTPAMDKYVVKG LN++
Sbjct: 95 KIKSAGLAGALAYGGTELAFWIISVPLAVVGYHQTTGEWLDLTTLEGKEKLFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGLLNKN 186
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A7S2USK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK8_9STRA) HSP 1 Score: 122 bits (305), Expect = 5.730e-33 Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEEA----TGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNR 261
K+KSAGLAGAL+YG EL FW++S PLA++ Y QTTGEW DL++ EGK + TGFLTFARLAVP RIA ALALTPAMDKYVV+ + ++
Sbjct: 111 KVKSAGLAGALSYGAFELLFWVVSTPLAILAYHQTTGEWPDLSSAEGKGKVLALTTGFLTFARLAVPFRIATALALTPAMDKYVVQKYFSK 201
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: W7T0Q7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0Q7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.810e-21 Identity = 42/91 (46.15%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE----ATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNR 261
+++ GLAG +Y +E+ FW IS+P+ +V + Q+TGEWLDL+T +G+ + + GFLTFAR+A+PLR +A AL PA++KYV++ + R
Sbjct: 119 RLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVAR 209
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A7S4I4C4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I4C4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.240e-19 Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
++K +G AG ++Y ELAFW ISVP+ + GYRQ TG W DL E E EA F+ FAR AVPLRI LAL+ P + + +V F+ RD
Sbjct: 136 QVKESGTAGVISYALWELAFWTISVPVCIFGYRQLTGHWPDLADKEDMEKLGAEAFAFVNFARFAVPLRIGLALSTAPWIQENLVDRFVKRD 227
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: B8C238_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C238_THAPS) HSP 1 Score: 89.4 bits (220), Expect = 6.620e-19 Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNR 261
K+K AG AGA++Y ELAFW +S+P+ VVGY+Q TG W D + E + EA F+ FARLAVPLRI LAL+ T +D+ VV+ F+ +
Sbjct: 402 KVKQAGTAGAISYALWELAFWGVSLPVCVVGYKQLTGHWPDFSNSEDMQKVGAEAFAFVNFARLAVPLRIGLALSTTQWIDENVVQKFMKK 492
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A4D9CMH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMH7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 9.380e-19 Identity = 40/87 (45.98%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE----ATGFLTFARLAVPLRIALALALTPAMDKYVVKG 249
+++ GLAG +Y +E+ FW IS+P+ +V + Q+TGEWLDL+T +G+ + + GFLTFAR+A+PLR +A AL PA++KY++
Sbjct: 16 RLQDFGLAGIASYIASEVLFWFISLPIGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYLLSN 102
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: K0RHN0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RHN0_THAOC) HSP 1 Score: 88.6 bits (218), Expect = 1.360e-18 Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
K+K AG AGA++Y EL FW +S+P+ + GY+Q TG W D +E ++ EA F+ FARLAVPLRI LAL+ TP +D+ VV+ F +D
Sbjct: 566 KVKEAGTAGAISYALWELGFWGLSLPVCIFGYQQATGHWPDFGDVEDQKKIAAEAFAFVNFARLAVPLRIGLALSTTPWIDENVVQKFGKKD 657
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A061SKZ6_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SKZ6_9CHLO) HSP 1 Score: 84.0 bits (206), Expect = 2.580e-18 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGK--EEATGFLTFARLAVPLRIALALALTPAMDKYVVK 246
+IKS G++G ++Y TELAFW +++P A Y TTGEWL +T + + A GF+T RLAVPLR+A ALALTP +DK +V+
Sbjct: 92 RIKSFGISGTISYILTELAFWTVALPAAAFSYHSTTGEWLSWSTDKAQLIGIAAGFVTVVRLAVPLRMAAALALTPVVDKLLVQ 175
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A6U9WE40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WE40_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.630e-18 Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFL 255
KIK +G+AG ++Y ELAFW +SVP+ V+GY++ TG W DLT + EA F+ FAR AVPLRI LAL TP + + +V FL
Sbjct: 139 KIKDSGVAGVISYASWELAFWTVSVPVCVLGYKEVTGHWPDLTDKDDLSKLGAEAFAFVNFARFAVPLRIGLALGTTPWIQENIVDVFL 227
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: R1C379_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C379_EMIHU) HSP 1 Score: 82.8 bits (203), Expect = 4.130e-18 Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
KIK AG+AG ++Y E AFW +SVP+ V+GYR+ TG W DLT E + EA F+ AR A+PLRI LAL TP + +V F D
Sbjct: 69 KIKDAGVAGIISYVFWEWAFWGVSVPVCVLGYREVTGHWPDLTNSEDQAKLGAEAFAFVNVARFAIPLRIGLALGTTPWVQANIVDKFQKED 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11309.1062.1 >prot_H-elongata_contig11309.1062.1 ID=prot_H-elongata_contig11309.1062.1|Name=mRNA_H-elongata_contig11309.1062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEEback to top mRNA from alignment at H-elongata_contig11309:4124..4955- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11309.1062.1 ID=mRNA_H-elongata_contig11309.1062.1|Name=mRNA_H-elongata_contig11309.1062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at H-elongata_contig11309:4124..4955- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11309:4124..4955- >mRNA_H-elongata_contig11309.1062.1 ID=mRNA_H-elongata_contig11309.1062.1|Name=mRNA_H-elongata_contig11309.1062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig11309:4124..4955- (Himanthalia elongata Himel1 dioecious)back to top |