mRNA_H-elongata_contig11309.1062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11309.1062.1
Unique NamemRNA_H-elongata_contig11309.1062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: D8LJS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS4_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 5.210e-46
Identity = 79/92 (85.87%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE----ATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
            KIKSAGLAGALAYGGTELAFW+ISVPLAVVGY QTTGEWLDLTTLEGKE+      GFLTFARL VPLRIALALALTPAMDKYVVKG LN++
Sbjct:   95 KIKSAGLAGALAYGGTELAFWIISVPLAVVGYHQTTGEWLDLTTLEGKEKLFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGLLNKN 186          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A7S2USK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.730e-33
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEEA----TGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNR 261
            K+KSAGLAGAL+YG  EL FW++S PLA++ Y QTTGEW DL++ EGK +     TGFLTFARLAVP RIA ALALTPAMDKYVV+ + ++
Sbjct:  111 KVKSAGLAGALSYGAFELLFWVVSTPLAILAYHQTTGEWPDLSSAEGKGKVLALTTGFLTFARLAVPFRIATALALTPAMDKYVVQKYFSK 201          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: W7T0Q7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0Q7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-21
Identity = 42/91 (46.15%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE----ATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNR 261
            +++  GLAG  +Y  +E+ FW IS+P+ +V + Q+TGEWLDL+T +G+ +    + GFLTFAR+A+PLR  +A AL PA++KYV++  + R
Sbjct:  119 RLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVAR 209          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A7S4I4C4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I4C4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.240e-19
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
            ++K +G AG ++Y   ELAFW ISVP+ + GYRQ TG W DL   E  E    EA  F+ FAR AVPLRI LAL+  P + + +V  F+ RD
Sbjct:  136 QVKESGTAGVISYALWELAFWTISVPVCIFGYRQLTGHWPDLADKEDMEKLGAEAFAFVNFARFAVPLRIGLALSTAPWIQENLVDRFVKRD 227          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: B8C238_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C238_THAPS)

HSP 1 Score: 89.4 bits (220), Expect = 6.620e-19
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNR 261
            K+K AG AGA++Y   ELAFW +S+P+ VVGY+Q TG W D +  E  +    EA  F+ FARLAVPLRI LAL+ T  +D+ VV+ F+ +
Sbjct:  402 KVKQAGTAGAISYALWELAFWGVSLPVCVVGYKQLTGHWPDFSNSEDMQKVGAEAFAFVNFARLAVPLRIGLALSTTQWIDENVVQKFMKK 492          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A4D9CMH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMH7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.380e-19
Identity = 40/87 (45.98%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE----ATGFLTFARLAVPLRIALALALTPAMDKYVVKG 249
            +++  GLAG  +Y  +E+ FW IS+P+ +V + Q+TGEWLDL+T +G+ +    + GFLTFAR+A+PLR  +A AL PA++KY++  
Sbjct:   16 RLQDFGLAGIASYIASEVLFWFISLPIGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYLLSN 102          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: K0RHN0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RHN0_THAOC)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-18
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
            K+K AG AGA++Y   EL FW +S+P+ + GY+Q TG W D   +E ++    EA  F+ FARLAVPLRI LAL+ TP +D+ VV+ F  +D
Sbjct:  566 KVKEAGTAGAISYALWELGFWGLSLPVCIFGYQQATGHWPDFGDVEDQKKIAAEAFAFVNFARLAVPLRIGLALSTTPWIDENVVQKFGKKD 657          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A061SKZ6_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SKZ6_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 2.580e-18
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGK--EEATGFLTFARLAVPLRIALALALTPAMDKYVVK 246
            +IKS G++G ++Y  TELAFW +++P A   Y  TTGEWL  +T + +    A GF+T  RLAVPLR+A ALALTP +DK +V+
Sbjct:   92 RIKSFGISGTISYILTELAFWTVALPAAAFSYHSTTGEWLSWSTDKAQLIGIAAGFVTVVRLAVPLRMAAALALTPVVDKLLVQ 175          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: A0A6U9WE40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WE40_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.630e-18
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFL 255
            KIK +G+AG ++Y   ELAFW +SVP+ V+GY++ TG W DLT  +       EA  F+ FAR AVPLRI LAL  TP + + +V  FL
Sbjct:  139 KIKDSGVAGVISYASWELAFWTVSVPVCVLGYKEVTGHWPDLTDKDDLSKLGAEAFAFVNFARFAVPLRIGLALGTTPWIQENIVDVFL 227          
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Match: R1C379_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C379_EMIHU)

HSP 1 Score: 82.8 bits (203), Expect = 4.130e-18
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKE----EATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD 264
            KIK AG+AG ++Y   E AFW +SVP+ V+GYR+ TG W DLT  E +     EA  F+  AR A+PLRI LAL  TP +   +V  F   D
Sbjct:   69 KIKDAGVAGIISYVFWEWAFWGVSVPVCVLGYREVTGHWPDLTNSEDQAKLGAEAFAFVNVARFAIPLRIGLALGTTPWVQANIVDKFQKED 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11309.1062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LJS4_ECTSI5.210e-4685.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2USK8_9STRA5.730e-3365.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7T0Q7_9STRA1.810e-2146.15Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S4I4C4_9STRA3.240e-1948.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8C238_THAPS6.620e-1950.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A4D9CMH7_9STRA9.380e-1945.98Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K0RHN0_THAOC1.360e-1848.91Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A061SKZ6_9CHLO2.580e-1851.19Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A6U9WE40_9STRA2.630e-1849.44Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
R1C379_EMIHU4.130e-1847.83Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11309contigH-elongata_contig11309:4124..4955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.1e-35
Seed eggNOG ortholog2880.D8LJS4
EggNOG OGs2E0UH@1,2S883@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_003080.1
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.6982794-CDS-H-elongata_contig11309:4123..42331622929651.6982794-CDS-H-elongata_contig11309:4123..4233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 4124..4233 -
1691679106.1259687-CDS-H-elongata_contig11309:4123..42331691679106.1259687-CDS-H-elongata_contig11309:4123..4233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 4124..4233 -
1622929651.716893-CDS-H-elongata_contig11309:4801..49551622929651.716893-CDS-H-elongata_contig11309:4801..4955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 4802..4955 -
1691679106.1349025-CDS-H-elongata_contig11309:4801..49551691679106.1349025-CDS-H-elongata_contig11309:4801..4955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 4802..4955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11309.1062.1prot_H-elongata_contig11309.1062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11309 4124..4955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11309.1062.1

>prot_H-elongata_contig11309.1062.1 ID=prot_H-elongata_contig11309.1062.1|Name=mRNA_H-elongata_contig11309.1062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
KIKSAGLAGALAYGGTELAFWLISVPLAVVGYRQTTGEWLDLTTLEGKEE
ATGFLTFARLAVPLRIALALALTPAMDKYVVKGFLNRD
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mRNA from alignment at H-elongata_contig11309:4124..4955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11309.1062.1 ID=mRNA_H-elongata_contig11309.1062.1|Name=mRNA_H-elongata_contig11309.1062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at H-elongata_contig11309:4124..4955- (Himanthalia elongata Himel1 dioecious)
AAGATCAAGTCGGCGGGGCTTGCGGGTGCCCTAGCATACGGCGGGACGGA GCTGGCCTTCTGGCTGATCAGCGTACCGCTTGCGGTGGTGGGTTACCGGC AGACCACGGGAGAGTGGCTCGACCTTACGACCCTCGAGGGGAAAGAGGAG GCAAGTACGACACCATGGAAAGAATCCACGGTAAGGTGGCGTTTGAACCA GCCCACGAGGTGTAAAATGAGAAGCAAGTTGCTGCAACGGTAATTTGGAT GCACATGTCTTCCTTGCACCATCTCACTACGCCCTTACGTCGCCCATGAC TCTAGTGCCGTTTTAGCGCCGATAATTTGACCGCATGTTCGCGCGATACG ACTAACCGTAAAATTTCCCTCATCTGTACGATGCTTAAGTCACCGCGGGT GGTGTAGTTAATGGATCGATCAACCGCAGCATGCGACACTGCACATAAAG CTTGGTATATATTTTCCCAATCGAACGCTAACTCGTTTCCGTCCGCCTTG CACGACTTAGGCACGTAGGGGTGGACCATGTAAGGCAAAGAATAAGCCTC GTTTAACATCGTCATCGTGTGCGCAGCGCGCAGACCATTCAATCCACGTA GTGTGTTCAGCCTGTTATGATCCCATGTCTTGACCAACCCACCGCGAACA TTCACACCTGCTAATTTGCCCCTCTTATATATGTCGTCCCCCACCGCCCT CTCCAGCTGTTCGGCTTGACAGCAGGCTTCCTAACGTTCGCTAGACTGGC GGTGCCTTTGCGGATCGCCCTTGCCCTCGCGTTAACGCCGGCCATGGACA AGTATGTCGTCAAGGGTTTCCTAAATCGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig11309:4124..4955-

>mRNA_H-elongata_contig11309.1062.1 ID=mRNA_H-elongata_contig11309.1062.1|Name=mRNA_H-elongata_contig11309.1062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig11309:4124..4955- (Himanthalia elongata Himel1 dioecious)
AAGATCAAGTCGGCGGGGCTTGCGGGTGCCCTAGCATACGGCGGGACGGA
GCTGGCCTTCTGGCTGATCAGCGTACCGCTTGCGGTGGTGGGTTACCGGC
AGACCACGGGAGAGTGGCTCGACCTTACGACCCTCGAGGGGAAAGAGGAG
GCAAAAGATCAAGTCGGCGGGGCTTGCGGGTGCCCTAGCATACGGCGGGA
CGGAGCTGGCCTTCTGGCTGATCAGCGTACCGCTTGCGGTGGTGGGTTAC
CGGCAGACCACGGGAGAGTGGCTCGACCTTACGACCCTCGAGGGGAAAGA
GGAGGCAACAGGCTTCCTAACGTTCGCTAGACTGGCGGTGCCTTTGCGGA
TCGCCCTTGCCCTCGCGTTAACGCCGGCCATGGACAAGTATGTCGTCAAG
GGTTTCCTAAATCGCGATCAGGCTTCCTAACGTTCGCTAGACTGGCGGTG
CCTTTGCGGATCGCCCTTGCCCTCGCGTTAACGCCGGCCATGGACAAGTA
TGTCGTCAAGGGTTTCCTAAATCGCGAT
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