mRNA_H-elongata_contig112725.1042.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.700e-23 Identity = 50/117 (42.74%), Postives = 79/117 (67.52%), Query Frame = 3
Query: 615 ELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSG 962
+LKIR+L+AEV+ T+LY C + S HY L+ H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D+RLPK ++LG + GG G GG++ +G
Sbjct: 10 QLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQEXTG 126
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.120e-22 Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGA 932
YDRP PL LK+R+L+AEV+ T+LY C T + + Y L AHH F+ +CIGW+ D P+S+ + G ES++ +R+R++ FAGFV M D RLPK +LGE+ GGA
Sbjct: 164 YDRPGG-PLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGA 278
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.860e-22 Identity = 64/172 (37.21%), Postives = 97/172 (56.40%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSGW---------GVFWKTSKLSVSTPTIGRLQPRMRGNGARLWNKGRN 1073
YDR A +LKIR+L+AEV+ +LY C + S HY L+ H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D+RLPK ++LG + GG G GG++ S W W+T + V+ G+ PR R G GR+
Sbjct: 87 YDR-RRANRQLKIRLLQAEVVEHLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQE-SDWVSRLGEDLVASTWETKRKGVN----GKRAPRTRRCGTTRSRTGRH 252
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 6.690e-22 Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRK 953
YDR A +LKIR+L+AEV+ T+LY C + S HY L+ H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D RLPK ++LGE+ GG GG++
Sbjct: 30 YDR-RRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQE 151
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 104 bits (259), Expect = 7.150e-22 Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSGW 965
YDR A +LKIR+L+AEV+ T+LY C + S HY L+ H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D+RLPK ++LG + GG G GG++ S W
Sbjct: 2 YDR-RRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQE-SDW 126
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5L053_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L053_9PHAE) HSP 1 Score: 102 bits (253), Expect = 9.390e-22 Identity = 57/148 (38.51%), Postives = 88/148 (59.46%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSGWGVFWKTSKLSV-STPTIGRLQ 1025
YDR A +LKIR+L+AEV+ T+LY + + HY L H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D+R PK ++LG + GG GC GG++ S W + V +GR+Q
Sbjct: 2 YDR-RRADRQLKIRLLQAEVVETLLYGYASWNLTAEHYTKLKGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRRPKRMLLGAMAGGVGCRGGQE-SDWVSLLRFGAFIVPQREVVGRIQ 147
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5JYP4_9PHAE (Myb_DNA-bind_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP4_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.430e-21 Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSGW 965
YDR A +LKIR+L+AEV+ T+LY C + S V HY L H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+CM+D+RLPK ++LG + GG G GG++ S W
Sbjct: 87 YDR-RRANRQLKIRLLQAEVVETLLYGCASWSLTVEHYTKLTGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMCMEDSRLPKRMLLGAMAGGVGYRGGQE-SDW 211
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5JQG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG6_9PHAE) HSP 1 Score: 102 bits (253), Expect = 3.310e-21 Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRK 953
YDR A +LKIR+L+AEV+ T+LY C + S HY L+ H F+T+CIGW D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D RLPK ++LG + GG G GG++
Sbjct: 2 YDR-RRADRQLKIRLLQAEVVETLLYGCASWSLIAEHYTKLNGTHRQFLTRCIGWSKRKRLDRPLSNAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQE 123
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.370e-21 Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSGW 965
YDRP A LKIR+L+AEV+ T+LY C + S HY L+ H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M D+RLPK ++LG + GG G GR++S W
Sbjct: 157 YDRPRANR-PLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVG-YRGRQESDW 281
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.830e-21 Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 3
Query: 588 YDRPSAAPLELKIRMLKAEVLGTILYSCDTRSSRVCHYDMLHRAHHGFVTQCIGWRNNNCTDHPISHLNTFMKTG-SESIKTIMRRRQILFAGFVVCMDDTRLPKCVMLGEIVGGAGCVGGRKKSGW 965
YDR A +LKIR+L+AEV+ T+LY C + S HY L+ H F+T+CIGW +D P+S+ ++ G E+I+ +R+R++ FAGFV+ M+D RLPK ++LG + GG G GG++ S W
Sbjct: 87 YDR-KRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQE-SDW 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112725.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112725.1042.1 >prot_H-elongata_contig112725.1042.1 ID=prot_H-elongata_contig112725.1042.1|Name=mRNA_H-elongata_contig112725.1042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp MLSFLLLSVAHPVYVFPVDTVSLEICLEPYDRPSAAPLELKIRMLKAEVLback to top mRNA from alignment at H-elongata_contig112725:582..2018+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112725.1042.1 ID=mRNA_H-elongata_contig112725.1042.1|Name=mRNA_H-elongata_contig112725.1042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-elongata_contig112725:582..2018+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112725:582..2018+ >mRNA_H-elongata_contig112725.1042.1 ID=mRNA_H-elongata_contig112725.1042.1|Name=mRNA_H-elongata_contig112725.1042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig112725:582..2018+ (Himanthalia elongata Himel1 dioecious)back to top |