mRNA_H-elongata_contig112122.986.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112122.986.1
Unique NamemRNA_H-elongata_contig112122.986.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 136 bits (343), Expect = 3.010e-34
Identity = 64/158 (40.51%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLW 474
            P ++ EAQAS EWP+WE+A+  E D     G W++   PK +  +G + VF+RK +K+G++ KYK RLVAQG+ Q  G+ + E+ +P    +SIR +L++    +WE  Q+DV   YL  D++EEIY+  PE + D   ++  L+K +YGL  +G  W
Sbjct:  907 PRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREW 1064          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 133 bits (334), Expect = 4.920e-33
Identity = 70/161 (43.48%), Postives = 97/161 (60.25%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPE--AYRDSKKQVGLLKKAMYGLVHAGLLWY 477
            PT++ EAQ + +WP+WE AI  EMD   A   + +V RP G  V+G+R+VF RK D DG I + K R+VAQGF Q  G+ Y E+ +P     S+R++L++ A   W   QLDV   YL  D+ EEIY+  P   A +  +  V  L+K++YGL  AG  WY
Sbjct:  988 PTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAWY 1148          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 129 bits (325), Expect = 7.490e-32
Identity = 68/161 (42.24%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPE--AYRDSKKQVGLLKKAMYGLVHAGLLWY 477
            P ++ EAQAS +WPQWERAI  EM+   A G + +V +P G  V+G+++VF RK + +G + + K R+VAQGF Q  GI + E+ +P     S+R+++++ A   W   QLDV   YL  D+ EEIY+  P   A    +  V  LKK++YGL  AG  WY
Sbjct:  322 PLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAARFGWPMIQLDVKSAYLNGDLDEEIYMRQPPGTAAAGEEHLVCRLKKSLYGLKQAGRAWY 482          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 129 bits (325), Expect = 7.910e-32
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 477
            P T+ EA+   +WP WE AI +E+   +  G W +   P G+  +G++ VFK K+  DG +DKYK RLVAQGF Q  G+ Y+E+ +P     ++R+++++ A   W A Q+DV   YL  +++EEIY+  P  Y +  K V  L KA+YGL  AG  WY
Sbjct:  830 PKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEEEIYMRAPPGYAEGDK-VCRLCKALYGLKQAGRTWY 987          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 129 bits (324), Expect = 1.040e-31
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLW 474
            P T+ EAQA+ EWP+W+RA+  E+      G +     P G+  +G R V++ K D DG+I +YK RLVAQGF QA G+ Y E+ +P    DS+R++L++ A  + E  Q DV   YL AD+ EEIY+  P  Y +    +  L+KA+YGL  AG  W
Sbjct:   15 PRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQW 172          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 127 bits (320), Expect = 3.750e-31
Identity = 62/159 (38.99%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 477
            P +  +A +  +  +W +A   E++     GV++ V RP+ + ++G++ VFK K   DG+++KYK RLVAQGF Q +GI Y E+ +P    +SIR++L++ A  DWE  Q+DV   +L  +++EEIY+++P  ++ S   V  LKKA+YGL  A   WY
Sbjct:  995 PLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWY 1153          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 126 bits (317), Expect = 9.380e-31
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDS----KKQVGLLKKAMYGLVHAGLLW 474
            P T  EA+  S+W +W +A+  +MD       W +V  P G+  +G+R V+K K+D++GK D++K RLVAQGF Q  G+ Y E+ +P    DS+R++L++ A   W   Q+DV   YL  D++EE+Y+  P  Y       K  V  L+  +YGL  +G  W
Sbjct:  732 PATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKGGSRRKNMVCKLRLPLYGLKQSGRQW 893          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 125 bits (313), Expect = 3.280e-30
Identity = 64/161 (39.75%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELP--EAYRDSKKQVGLLKKAMYGLVHAGLLWY 477
            P ++ EA  S +WPQW++AI +EM        + +V  P+   V+G++ VF+ K + +GKI+ YK RLVAQGF Q  GI + ++ +P     SIR++L++ A  DW+  Q+DV   YL AD++EEI+++ P  +A R  +  V LL+ A+YGL  +G  W+
Sbjct:  960 PRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWF 1120          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A2G8RTP0_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RTP0_9APHY)

HSP 1 Score: 124 bits (311), Expect = 6.100e-30
Identity = 62/161 (38.51%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPE--AYRDSKKQVGLLKKAMYGLVHAGLLWY 477
            P T+ EAQ + +W +WE+AI+ EM+   A G +++V +P G  V+G+++VF RK + +G + ++K R+VAQGF Q  GI ++++ +P     S+R+++++ A   W   QLDV   YL  ++ E IY+  P   A    +  V LLKK++YGL  AG  WY
Sbjct: 1000 PRTLREAQEAPDWVEWEKAISVEMENLKAHGTYELVAKPHGAHVIGSKLVFHRKRNAEGAVTQHKVRVVAQGFAQVPGIEFDQTFAPVAKPSSLRLMIALAARFGWPMIQLDVKSAYLNGELDEVIYMRQPPGTAAHGEEHLVCLLKKSLYGLKQAGRSWY 1160          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 116 bits (290), Expect = 8.130e-30
Identity = 61/167 (36.53%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 PTTMGEAQASSEWPQWERAIAREMDGQTAQGVWQVV*RPKGKTVLGTRVVFKRKIDKDGKIDKYKCRLVAQGFRQAKGIHYEESSSPTRAQDSIRMVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAY--------RDSKKQVGLLKKAMYGLVHAGLLWY 477
            P T  +A  S     W++A+  E +       W +V RP+GKTV+G+R VF+ K+  DG +++ K RLVA+GF Q  G HY E+ +      SIR V+++ A  + E  QLD    YL  +++EEIY+E+P+          +D + +V  ++KA+YGL  +G +WY
Sbjct:   17 PMTPKQALESPYAEDWKKAMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMWY 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GYH9_9APHY3.010e-3440.51Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A1M2V8C6_TRAPU4.920e-3343.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K1K0E1_9APHY7.490e-3242.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5C3E5T1_9BASI7.910e-3240.88Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A0A1M2V3W8_TRAPU1.040e-3142.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK3.750e-3138.99Integrase catalytic domain-containing protein (Fra... [more]
A0A177U1E5_9BASI9.380e-3137.65Integrase catalytic domain-containing protein n=2 ... [more]
A0A401GQU1_9APHY3.280e-3039.75Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A2G8RTP0_9APHY6.100e-3038.51Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A0A9Y7J8_LYGHE8.130e-3036.53Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112122contigH-elongata_contig112122:631..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog981085.XP_010101443.1
KEGG koko:K16743
EggNOG free text desc.Abnormal spindle-like microcephaly-associated protein homolog
EggNOG OGs37R7M@33090,3GGW1@35493,4JJ08@91835,COG2801@1,KOG0017@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.3083296-UTR-H-elongata_contig112122:630..9151622929643.3083296-UTR-H-elongata_contig112122:630..915Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112122 631..915 +
1691679103.0361416-UTR-H-elongata_contig112122:630..9151691679103.0361416-UTR-H-elongata_contig112122:630..915Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112122 631..915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.3218987-CDS-H-elongata_contig112122:915..11071622929643.3218987-CDS-H-elongata_contig112122:915..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112122 916..1107 +
1691679103.0581663-CDS-H-elongata_contig112122:915..11071691679103.0581663-CDS-H-elongata_contig112122:915..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112122 916..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112122.986.1prot_H-elongata_contig112122.986.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112122 916..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112122.986.1

>prot_H-elongata_contig112122.986.1 ID=prot_H-elongata_contig112122.986.1|Name=mRNA_H-elongata_contig112122.986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLK
KAMYGLVHAGLLWY
back to top

mRNA from alignment at H-elongata_contig112122:631..1107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112122.986.1 ID=mRNA_H-elongata_contig112122.986.1|Name=mRNA_H-elongata_contig112122.986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig112122:631..1107+ (Himanthalia elongata Himel1 dioecious)
CCAACAACCATGGGCGAGGCACAAGCGTCGTCGGAGTGGCCGCAATGGGA AAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTCAAGGAGTGTGGC AGGTGGTGTAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTT TTCAAGCGCAAAATTGACAAGGATGGAAAGATCGACAAGTATAAATGTCG TCTCGTGGCGCAGGGTTTCAGGCAGGCCAAAGGCATACACTACGAGGAAT CCTCCTCTCCGACTCGTGCGCAGGACAGCATTAGGATGGTACTCAGCATG ATCGCGGCTCTCGACTGGGAGGCGCGGCAGCTGGACGTCGGCATGGTCTA CCTGGAGGCCGATGTGAAGGAGGAAATCTACGTTGAGCTCCCGGAGGCAT ACCGTGACTCCAAGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGA CTCGTCCACGCCGGGCTGCTGTGGTAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig112122:631..1107+

>mRNA_H-elongata_contig112122.986.1 ID=mRNA_H-elongata_contig112122.986.1|Name=mRNA_H-elongata_contig112122.986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig112122:631..1107+ (Himanthalia elongata Himel1 dioecious)
ATGGTACTCAGCATGATCGCGGCTCTCGACTGGGAGGCGCGGCAGCTGGA
CGTCGGCATGGTCTACCTGGAGGCCGATGTGAAGGAGGAAATCTACGTTG
AGCTCCCGGAGGCATACCGTGACTCCAAGAAGCAAGTCGGCCTACTAAAG
AAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTATATGGTACT
CAGCATGATCGCGGCTCTCGACTGGGAGGCGCGGCAGCTGGACGTCGGCA
TGGTCTACCTGGAGGCCGATGTGAAGGAGGAAATCTACGTTGAGCTCCCG
GAGGCATACCGTGACTCCAAGAAGCAAGTCGGCCTACTAAAGAAGGCAAT
GTACGGACTCGTCCACGCCGGGCTGCTGTGGTAT
back to top