mRNA_H-elongata_contig112074.980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112074.980.1
Unique NamemRNA_H-elongata_contig112074.980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.980e-23
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   16 NSLGQ--TDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
             S+G    DAELRLYCAFSFPAVV+TIG DRW ELR++F+AL+RDPSWSVRKTLS+SLHE+
Sbjct:  310 ESMGDPVADAELRLYCAFSFPAVVVTIGPDRWHELRESFAALIRDPSWSVRKTLSFSLHEI 370          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: A0A7S1CBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBG0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   34 DAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            D +L LYCAFSFPAV LT+G DRW ELR  F AL RD    VR+TLS+SLHEV
Sbjct:  327 DGDLSLYCAFSFPAVALTLGPDRWPELRALFLALSRDVQRKVRRTLSHSLHEV 379          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: L8GSJ6_ACACA (Protein phosphatase 4 regulatory subunit 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSJ6_ACACA)

HSP 1 Score: 73.9 bits (180), Expect = 7.090e-14
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   34 DAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            DAE+  YCAF FPAV+ TIG+DRWGE++  + AL++D  W VR+ L+++LHEV
Sbjct:  300 DAEIVNYCAFDFPAVIYTIGRDRWGEVKATYEALVKDLQWKVRRPLAHALHEV 352          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: A0A024UKY7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKY7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.620e-13
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   22 LGQTDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            LG  +++++ +CAF++PAV  T+G  +WG+L   F AL RD  W VR+TLSYSLHE+
Sbjct:  327 LGGAESDIKFHCAFNYPAVTTTLGVHQWGKLAAGFDALARDGFWKVRRTLSYSLHEM 383          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: A0A151Z420_9MYCE (Protein phosphatase 4 regulatory subunit 1 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z420_9MYCE)

HSP 1 Score: 71.6 bits (174), Expect = 4.620e-13
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   16 NSLGQTDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            +S+   D++L   CAF+FPAV++TIGQ RW EL+D +  L+ D +W VR++LS+S+HE+
Sbjct:  330 SSIKFPDSDLITRCAFNFPAVLMTIGQARWNELKDTYITLVSDTNWKVRRSLSHSIHEI 388          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: A0A7S3GLY1_9EUKA (Hypothetical protein n=3 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GLY1_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 8.620e-13
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   34 DAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            D +L  YCA+SFPAVVL++G  RW EL DAF AL +D  + VR++L++SLHEV
Sbjct:  343 DGDLSYYCAYSFPAVVLSVGARRWSELCDAFMALAKDIQYKVRRSLAFSLHEV 395          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: W4G8B7_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8B7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.200e-12
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   22 LGQTDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            LG  +A+++ +CA+++PAV  T+G   WG+L   F AL  D  W VR+TLSYSLHE+
Sbjct:  327 LGGAEADIKFHCAYNYPAVAATVGPTLWGQLAAGFDALTHDGFWKVRRTLSYSLHEM 383          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: A0A397VAV1_9GLOM (Armadillo-type protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397VAV1_9GLOM)

HSP 1 Score: 68.9 bits (167), Expect = 4.090e-12
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   16 NSLGQTDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            N+LGQ D E  + CAF+FPAVVLT+G+  W +L+D +  L RD    VR++L+ SLHE+
Sbjct:  329 NNLGQRDPERPVICAFNFPAVVLTLGESSWDDLKDTYIPLTRDMQIKVRRSLACSLHEI 387          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: L1IMG2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IMG2_GUITC)

HSP 1 Score: 68.9 bits (167), Expect = 4.090e-12
Identity = 26/53 (49.06%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   34 DAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            D +L  +CA++FPAVV+T+G++ W  L++A+  L+ D  W VR+TLSYS+HE+
Sbjct:  242 DHDLPTFCAYNFPAVVMTVGRENWVHLQEAYHELINDIQWKVRRTLSYSIHEI 294          
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Match: A0A6H5I5H2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I5H2_9HYME)

HSP 1 Score: 68.6 bits (166), Expect = 5.610e-12
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 LPLLCNSLGQTDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPSWSVRKTLSYSLHEV 192
            LPL  N LG    +L  +CAFSFPAVVLT+G+D W  L+DA+  L    +W VR TL+ S+HE+
Sbjct:  331 LPLNDNELG---GDLDYHCAFSFPAVVLTLGKDNWHRLKDAYQRLAGAVAWKVRSTLASSIHEI 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112074.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTC4_ECTSI5.980e-2375.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CBG0_9STRA2.800e-1467.92Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
L8GSJ6_ACACA7.090e-1456.60Protein phosphatase 4 regulatory subunit 1, putati... [more]
A0A024UKY7_9STRA4.620e-1350.88Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A151Z420_9MYCE4.620e-1349.15Protein phosphatase 4 regulatory subunit 1 n=1 Tax... [more]
A0A7S3GLY1_9EUKA8.620e-1358.49Hypothetical protein n=3 Tax=Palpitomonas bilix Ta... [more]
W4G8B7_9STRA2.200e-1249.12Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A397VAV1_9GLOM4.090e-1250.85Armadillo-type protein n=1 Tax=Gigaspora rosea Tax... [more]
L1IMG2_GUITC4.090e-1249.06Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6H5I5H2_9HYME5.610e-1251.56Uncharacterized protein n=1 Tax=Trichogramma brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112074contigH-elongata_contig112074:1683..1874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
Ec32 ortholog descriptionProtein phosphatase 4 regulatory subunit 1
Ec32 orthologEc-21_000820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.7154887-CDS-H-elongata_contig112074:1682..18741622929642.7154887-CDS-H-elongata_contig112074:1682..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112074 1683..1874 -
1691679102.8573694-CDS-H-elongata_contig112074:1682..18741691679102.8573694-CDS-H-elongata_contig112074:1682..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112074 1683..1874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112074.980.1prot_H-elongata_contig112074.980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112074 1683..1874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112074.980.1

>prot_H-elongata_contig112074.980.1 ID=prot_H-elongata_contig112074.980.1|Name=mRNA_H-elongata_contig112074.980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
LPLLCNSLGQTDAELRLYCAFSFPAVVLTIGQDRWGELRDAFSALLRDPS
WSVRKTLSYSLHEV
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mRNA from alignment at H-elongata_contig112074:1683..1874-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112074.980.1 ID=mRNA_H-elongata_contig112074.980.1|Name=mRNA_H-elongata_contig112074.980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig112074:1683..1874- (Himanthalia elongata Himel1 dioecious)
CTTCCCCTTCTGTGTAACTCCCTCGGGCAGACGGACGCGGAGCTCAGGCT TTACTGCGCGTTTTCTTTTCCGGCGGTGGTGCTGACCATTGGCCAGGACC GGTGGGGAGAGCTCCGGGACGCGTTCTCCGCGCTGCTGAGGGACCCCAGC TGGTCCGTACGGAAGACCCTCAGCTACAGCCTGCACGAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig112074:1683..1874-

>mRNA_H-elongata_contig112074.980.1 ID=mRNA_H-elongata_contig112074.980.1|Name=mRNA_H-elongata_contig112074.980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig112074:1683..1874- (Himanthalia elongata Himel1 dioecious)
CTTCCCCTTCTGTGTAACTCCCTCGGGCAGACGGACGCGGAGCTCAGGCT
TTACTGCGCGTTTTCTTTTCCGGCGGTGGTGCTGACCATTGGCCAGGACC
GGTGGGGAGAGCTCCGGGACGCGTTCTCCGCGCTGCTGAGGGACCCCAGC
TGGTCCGTACGGAAGACCCTCAGCTACAGCCTGCACGAGGTTCTTCCCCT
TCTGTGTAACTCCCTCGGGCAGACGGACGCGGAGCTCAGGCTTTACTGCG
CGTTTTCTTTTCCGGCGGTGGTGCTGACCATTGGCCAGGACCGGTGGGGA
GAGCTCCGGGACGCGTTCTCCGCGCTGCTGAGGGACCCCAGCTGGTCCGT
ACGGAAGACCCTCAGCTACAGCCTGCACGAGGTT
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