mRNA_H-elongata_contig111713.953.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: D7G297_ECTSI (Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G297_ECTSI) HSP 1 Score: 213 bits (543), Expect = 5.410e-66 Identity = 103/117 (88.03%), Postives = 114/117 (97.44%), Query Frame = 1
Query: 1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQKAAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
+VCLFGCG++TG GAVMNTC+VEEG+TVAVFGLGAVGLAA+QAAKARKASRIFAID N SKF+LAK+LGATDC+NPKDSETPIQ+AAHRGWGESC+IGVAAAGHEISTRPFQLVTGR
Sbjct: 228 KVCLFGCGVATGFGAVMNTCDVEEGSTVAVFGLGAVGLAALQAAKARKASRIFAIDTNPSKFELAKQLGATDCLNPKDSETPIQQAAHRGWGESCIIGVAAAGHEISTRPFQLVTGR 344
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A7S2UVR6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVR6_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.050e-50 Identity = 89/146 (60.96%), Postives = 103/146 (70.55%), Query Frame = 1
Query: 1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK-----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
+ CLFGCG+STGLGAV NTC VE+G++VAVFGLGAVGLA IQ AK A+RI A+D+N SKF +AKELGATDC++PKD + P+Q+ AHRGWGESCVIGVAAAGHEISTRPFQLVTGR
Sbjct: 143 KACLFGCGVSTGLGAVWNTCKVEQGSSVAVFGLGAVGLAVIQGAKIAGATRIIAVDVNPSKFDMAKELGATDCVDPKDIDKPVQQHIAGDLTDWGVDYSFDCTGNTEVMRAALECAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 288
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A7S1VWC6_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VWC6_9STRA) HSP 1 Score: 167 bits (424), Expect = 7.130e-49 Identity = 87/146 (59.59%), Postives = 101/146 (69.18%), Query Frame = 1
Query: 1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK-----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
++CLFGCG+STGLGAV NTC VE ++VAVFGLGAVGLA IQ A AS+I A+DIN SKF++AK+LGATDC+NPKD E PIQK +HRGWG SC+IGVAA+GHEISTRPFQLVTGR
Sbjct: 132 KICLFGCGVSTGLGAVWNTCKVEVNSSVAVFGLGAVGLAVIQGAAMAGASKIIAVDINPSKFEIAKQLGATDCVNPKDVEGPIQKHIAGAMTQWGVDYSFDCTGNTQVMRSALECSHRGWGTSCIIGVAASGHEISTRPFQLVTGR 277
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: F2UEK0_SALR5 (Formaldehyde dehydrogenase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UEK0_SALR5) HSP 1 Score: 167 bits (424), Expect = 9.780e-49 Identity = 87/144 (60.42%), Postives = 103/144 (71.53%), Query Frame = 1
Query: 4 VCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
+CLFGCG++TGLGAV NTC VE G++VAV+GLGAVGLA IQAAK ASRIFA+D N SKF +A++LGATDC+NP D + PIQ+ ++HRGWG+SCVIGVAAAGHEISTRPFQLVTGR
Sbjct: 189 MCLFGCGVTTGLGAVFNTCKVEPGSSVAVWGLGAVGLAVIQAAKKAGASRIFALDTNTSKFSMAEKLGATDCVNPNDFDQPIQQVLVEKTGWGIDYTFDATGNTDVMRAALESSHRGWGKSCVIGVAAAGHEISTRPFQLVTGR 332
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A0L0FNM3_9EUKA (Alcohol dehydrogenase class-3 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FNM3_9EUKA) HSP 1 Score: 168 bits (425), Expect = 1.220e-48 Identity = 90/143 (62.94%), Postives = 101/143 (70.63%), Query Frame = 1
Query: 7 CLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
CL GCG+STG GAVM TC VEEG+TVAV+GLGAVGLAAIQAA KASRIFAID+NE KF+ AK+LGAT+C+NPKD + PI+K AAHRGWG SCV+GVA AG EISTRPFQLVTGR
Sbjct: 174 CLLGCGVSTGFGAVMRTCKVEEGSTVAVWGLGAVGLAAIQAAALNKASRIFAIDMNEGKFEHAKKLGATECLNPKDFDEPIEKVLVEKTKWGVDYTFDATGSVKVMRSALEAAHRGWGVSCVVGVAPAGAEISTRPFQLVTGR 316
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: W4GZC1_9STRA (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, variant 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZC1_9STRA) HSP 1 Score: 164 bits (416), Expect = 2.410e-48 Identity = 88/144 (61.11%), Postives = 101/144 (70.14%), Query Frame = 1
Query: 4 VCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
+CLFGCGISTG GAV NT VE G++VAVFG+GAVGLA IQAAK ASRIFAID N +KF++A +LGATDCI+P S+TPIQ+ A+HRGWGESCVIGVAAAGHEI TRPFQL+TGR
Sbjct: 54 MCLFGCGISTGFGAVFNTTKVEPGSSVAVFGIGAVGLAVIQAAKQAGASRIFAIDPNPTKFRMATQLGATDCIDPTASDTPIQQILVETTKWGVDYTYDCTGNTEVMRAALEASHRGWGESCVIGVAAAGHEIQTRPFQLITGR 197
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A1Z5KDM3_FISSO (S-(Hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDM3_FISSO) HSP 1 Score: 166 bits (420), Expect = 7.420e-48 Identity = 88/146 (60.27%), Postives = 102/146 (69.86%), Query Frame = 1
Query: 1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQ-----------------------------KAAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
++CLFGCGISTGLGAV NTC VE G++VAVFGLGAVGLA IQ A+ AS+I A+DIN SKF++AK+LGATDC+NPK+ E IQ + AHRGWG SCVIGVAA+GHEISTRPFQLVTGR
Sbjct: 174 KMCLFGCGISTGLGAVWNTCKVETGSSVAVFGLGAVGLAVIQGAQKAGASKIIAVDINPSKFEMAKQLGATDCVNPKEVEGKIQSYIAGTMTPWGVDYTFDCTGNVEVMRAALECAHRGWGTSCVIGVAASGHEISTRPFQLVTGR 319
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A9UXC5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UXC5_MONBE) HSP 1 Score: 167 bits (422), Expect = 7.520e-48 Identity = 88/144 (61.11%), Postives = 99/144 (68.75%), Query Frame = 1
Query: 4 VCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
+CLFGCGISTGLGAV NTC VE G+TVAV+G+GAVGLA +QAAK A RIFAID N KF A+ +GATDCINP D E PIQ+ ++HRGWG+SCVIGVAAAGHEISTRPFQLVTGR
Sbjct: 209 MCLFGCGISTGLGAVFNTCKVEAGSTVAVWGVGAVGLAVVQAAKMSGAKRIFAIDTNNDKFDFARRMGATDCINPHDHEDPIQQVLIQETKWGIDYTFDCTGNTDCMRAALESSHRGWGKSCVIGVAAAGHEISTRPFQLVTGR 352
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: M2WXH8_GALSU (S-(hydroxymethyl)glutathione dehydrogenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXH8_GALSU) HSP 1 Score: 164 bits (416), Expect = 2.450e-47 Identity = 85/145 (58.62%), Postives = 99/145 (68.28%), Query Frame = 1
Query: 1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
+ CLFGCG++TG+GAV+NTC VE G TV VFGLGAVGL+AIQ A+ ASRI AIDINE KF+LAK++GATDC+NP + PIQ+ A HRGWGESC+IGVA AG EISTRPFQLVTGR
Sbjct: 167 RACLFGCGVTTGIGAVLNTCKVERGKTVGVFGLGAVGLSAIQGARLAGASRIVAIDINEGKFELAKKMGATDCVNPNKYDKPIQQVLIEMTNGGLDYTFEAVGNVKLMRAALEACHRGWGESCIIGVAGAGEEISTRPFQLVTGR 311
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A485LHU3_9STRA (Aste57867_21004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHU3_9STRA) HSP 1 Score: 166 bits (419), Expect = 2.470e-47 Identity = 89/145 (61.38%), Postives = 102/145 (70.34%), Query Frame = 1
Query: 1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
++CLFGCGISTG GAV NT VE G+TVAVFG+GAVGLA IQAAK ASRIFAID N SKF +AK+LGATDCI+P S+TPIQ+ A+HRGWG+SCVIGVAA+GHEI TRPFQL+TGR
Sbjct: 200 KMCLFGCGISTGFGAVFNTTKVEPGSTVAVFGVGAVGLAVIQAAKLAGASRIFAIDPNASKFGMAKQLGATDCIDPTASKTPIQQVLIEETKWGIDYTYDCTGNTEVMRAALEASHRGWGQSCVIGVAASGHEIQTRPFQLITGR 344 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111713.953.1 >prot_H-elongata_contig111713.953.1 ID=prot_H-elongata_contig111713.953.1|Name=mRNA_H-elongata_contig111713.953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASback to top mRNA from alignment at H-elongata_contig111713:1154..2054+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111713.953.1 ID=mRNA_H-elongata_contig111713.953.1|Name=mRNA_H-elongata_contig111713.953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at H-elongata_contig111713:1154..2054+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111713:1154..2054+ >mRNA_H-elongata_contig111713.953.1 ID=mRNA_H-elongata_contig111713.953.1|Name=mRNA_H-elongata_contig111713.953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig111713:1154..2054+ (Himanthalia elongata Himel1 dioecious)back to top |