mRNA_H-elongata_contig111713.953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111713.953.1
Unique NamemRNA_H-elongata_contig111713.953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: D7G297_ECTSI (Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G297_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 5.410e-66
Identity = 103/117 (88.03%), Postives = 114/117 (97.44%), Query Frame = 1
Query:    1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQKAAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            +VCLFGCG++TG GAVMNTC+VEEG+TVAVFGLGAVGLAA+QAAKARKASRIFAID N SKF+LAK+LGATDC+NPKDSETPIQ+AAHRGWGESC+IGVAAAGHEISTRPFQLVTGR
Sbjct:  228 KVCLFGCGVATGFGAVMNTCDVEEGSTVAVFGLGAVGLAALQAAKARKASRIFAIDTNPSKFELAKQLGATDCLNPKDSETPIQQAAHRGWGESCIIGVAAAGHEISTRPFQLVTGR 344          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A7S2UVR6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVR6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.050e-50
Identity = 89/146 (60.96%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK-----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            + CLFGCG+STGLGAV NTC VE+G++VAVFGLGAVGLA IQ AK   A+RI A+D+N SKF +AKELGATDC++PKD + P+Q+                              AHRGWGESCVIGVAAAGHEISTRPFQLVTGR
Sbjct:  143 KACLFGCGVSTGLGAVWNTCKVEQGSSVAVFGLGAVGLAVIQGAKIAGATRIIAVDVNPSKFDMAKELGATDCVDPKDIDKPVQQHIAGDLTDWGVDYSFDCTGNTEVMRAALECAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 288          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A7S1VWC6_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VWC6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.130e-49
Identity = 87/146 (59.59%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK-----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            ++CLFGCG+STGLGAV NTC VE  ++VAVFGLGAVGLA IQ A    AS+I A+DIN SKF++AK+LGATDC+NPKD E PIQK                              +HRGWG SC+IGVAA+GHEISTRPFQLVTGR
Sbjct:  132 KICLFGCGVSTGLGAVWNTCKVEVNSSVAVFGLGAVGLAVIQGAAMAGASKIIAVDINPSKFEIAKQLGATDCVNPKDVEGPIQKHIAGAMTQWGVDYSFDCTGNTQVMRSALECSHRGWGTSCIIGVAASGHEISTRPFQLVTGR 277          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: F2UEK0_SALR5 (Formaldehyde dehydrogenase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UEK0_SALR5)

HSP 1 Score: 167 bits (424), Expect = 9.780e-49
Identity = 87/144 (60.42%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    4 VCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            +CLFGCG++TGLGAV NTC VE G++VAV+GLGAVGLA IQAAK   ASRIFA+D N SKF +A++LGATDC+NP D + PIQ+                            ++HRGWG+SCVIGVAAAGHEISTRPFQLVTGR
Sbjct:  189 MCLFGCGVTTGLGAVFNTCKVEPGSSVAVWGLGAVGLAVIQAAKKAGASRIFALDTNTSKFSMAEKLGATDCVNPNDFDQPIQQVLVEKTGWGIDYTFDATGNTDVMRAALESSHRGWGKSCVIGVAAAGHEISTRPFQLVTGR 332          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A0L0FNM3_9EUKA (Alcohol dehydrogenase class-3 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FNM3_9EUKA)

HSP 1 Score: 168 bits (425), Expect = 1.220e-48
Identity = 90/143 (62.94%), Postives = 101/143 (70.63%), Query Frame = 1
Query:    7 CLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            CL GCG+STG GAVM TC VEEG+TVAV+GLGAVGLAAIQAA   KASRIFAID+NE KF+ AK+LGAT+C+NPKD + PI+K                            AAHRGWG SCV+GVA AG EISTRPFQLVTGR
Sbjct:  174 CLLGCGVSTGFGAVMRTCKVEEGSTVAVWGLGAVGLAAIQAAALNKASRIFAIDMNEGKFEHAKKLGATECLNPKDFDEPIEKVLVEKTKWGVDYTFDATGSVKVMRSALEAAHRGWGVSCVVGVAPAGAEISTRPFQLVTGR 316          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: W4GZC1_9STRA (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, variant 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZC1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.410e-48
Identity = 88/144 (61.11%), Postives = 101/144 (70.14%), Query Frame = 1
Query:    4 VCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            +CLFGCGISTG GAV NT  VE G++VAVFG+GAVGLA IQAAK   ASRIFAID N +KF++A +LGATDCI+P  S+TPIQ+                            A+HRGWGESCVIGVAAAGHEI TRPFQL+TGR
Sbjct:   54 MCLFGCGISTGFGAVFNTTKVEPGSSVAVFGIGAVGLAVIQAAKQAGASRIFAIDPNPTKFRMATQLGATDCIDPTASDTPIQQILVETTKWGVDYTYDCTGNTEVMRAALEASHRGWGESCVIGVAAAGHEIQTRPFQLITGR 197          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A1Z5KDM3_FISSO (S-(Hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDM3_FISSO)

HSP 1 Score: 166 bits (420), Expect = 7.420e-48
Identity = 88/146 (60.27%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQ-----------------------------KAAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            ++CLFGCGISTGLGAV NTC VE G++VAVFGLGAVGLA IQ A+   AS+I A+DIN SKF++AK+LGATDC+NPK+ E  IQ                             + AHRGWG SCVIGVAA+GHEISTRPFQLVTGR
Sbjct:  174 KMCLFGCGISTGLGAVWNTCKVETGSSVAVFGLGAVGLAVIQGAQKAGASKIIAVDINPSKFEMAKQLGATDCVNPKEVEGKIQSYIAGTMTPWGVDYTFDCTGNVEVMRAALECAHRGWGTSCVIGVAASGHEISTRPFQLVTGR 319          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A9UXC5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UXC5_MONBE)

HSP 1 Score: 167 bits (422), Expect = 7.520e-48
Identity = 88/144 (61.11%), Postives = 99/144 (68.75%), Query Frame = 1
Query:    4 VCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            +CLFGCGISTGLGAV NTC VE G+TVAV+G+GAVGLA +QAAK   A RIFAID N  KF  A+ +GATDCINP D E PIQ+                            ++HRGWG+SCVIGVAAAGHEISTRPFQLVTGR
Sbjct:  209 MCLFGCGISTGLGAVFNTCKVEAGSTVAVWGVGAVGLAVVQAAKMSGAKRIFAIDTNNDKFDFARRMGATDCINPHDHEDPIQQVLIQETKWGIDYTFDCTGNTDCMRAALESSHRGWGKSCVIGVAAAGHEISTRPFQLVTGR 352          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: M2WXH8_GALSU (S-(hydroxymethyl)glutathione dehydrogenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXH8_GALSU)

HSP 1 Score: 164 bits (416), Expect = 2.450e-47
Identity = 85/145 (58.62%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            + CLFGCG++TG+GAV+NTC VE G TV VFGLGAVGL+AIQ A+   ASRI AIDINE KF+LAK++GATDC+NP   + PIQ+                            A HRGWGESC+IGVA AG EISTRPFQLVTGR
Sbjct:  167 RACLFGCGVTTGIGAVLNTCKVERGKTVGVFGLGAVGLSAIQGARLAGASRIVAIDINEGKFELAKKMGATDCVNPNKYDKPIQQVLIEMTNGGLDYTFEAVGNVKLMRAALEACHRGWGESCIIGVAGAGEEISTRPFQLVTGR 311          
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Match: A0A485LHU3_9STRA (Aste57867_21004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHU3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.470e-47
Identity = 89/145 (61.38%), Postives = 102/145 (70.34%), Query Frame = 1
Query:    1 QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKASRIFAIDINESKFKLAKELGATDCINPKDSETPIQK----------------------------AAHRGWGESCVIGVAAAGHEISTRPFQLVTGR 351
            ++CLFGCGISTG GAV NT  VE G+TVAVFG+GAVGLA IQAAK   ASRIFAID N SKF +AK+LGATDCI+P  S+TPIQ+                            A+HRGWG+SCVIGVAA+GHEI TRPFQL+TGR
Sbjct:  200 KMCLFGCGISTGFGAVFNTTKVEPGSTVAVFGVGAVGLAVIQAAKLAGASRIFAIDPNASKFGMAKQLGATDCIDPTASKTPIQQVLIEETKWGIDYTYDCTGNTEVMRAALEASHRGWGQSCVIGVAASGHEIQTRPFQLITGR 344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111713.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G297_ECTSI5.410e-6688.03Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2UVR6_9STRA1.050e-5060.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1VWC6_9STRA7.130e-4959.59Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
F2UEK0_SALR59.780e-4960.42Formaldehyde dehydrogenase n=1 Tax=Salpingoeca ros... [more]
A0A0L0FNM3_9EUKA1.220e-4862.94Alcohol dehydrogenase class-3 n=1 Tax=Sphaeroforma... [more]
W4GZC1_9STRA2.410e-4861.11S-(Hydroxymethyl)glutathione dehydrogenase/class I... [more]
A0A1Z5KDM3_FISSO7.420e-4860.27S-(Hydroxymethyl)glutathione dehydrogenase / alcoh... [more]
A9UXC5_MONBE7.520e-4861.11Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
M2WXH8_GALSU2.450e-4758.62S-(hydroxymethyl)glutathione dehydrogenase n=1 Tax... [more]
A0A485LHU3_9STRA2.470e-4761.38Aste57867_21004 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111713contigH-elongata_contig111713:1154..2054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue5.7e-53
Seed eggNOG ortholog2880.D7G297
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00167,RC00320,RC00649,RC01715,RC01734,RC02273
KEGG koko:K00121,ko:K01070
KEGG ReactionR00527,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204
EggNOG free text desc.alcohol dehydrogenase (NAD) activity
EggNOG OGsCOG1062@1,KOG0022@2759
EC1.1.1.1,1.1.1.284,3.1.2.12
COG Functional cat.C
CAZyCE1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.3712642-CDS-H-elongata_contig111713:1153..14081622929640.3712642-CDS-H-elongata_contig111713:1153..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111713 1154..1408 +
1691679101.881081-CDS-H-elongata_contig111713:1153..14081691679101.881081-CDS-H-elongata_contig111713:1153..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111713 1154..1408 +
1622929640.389103-CDS-H-elongata_contig111713:1958..20541622929640.389103-CDS-H-elongata_contig111713:1958..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111713 1959..2054 +
1691679101.8942792-CDS-H-elongata_contig111713:1958..20541691679101.8942792-CDS-H-elongata_contig111713:1958..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111713 1959..2054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111713.953.1prot_H-elongata_contig111713.953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111713 1154..2054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111713.953.1

>prot_H-elongata_contig111713.953.1 ID=prot_H-elongata_contig111713.953.1|Name=mRNA_H-elongata_contig111713.953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
QVCLFGCGISTGLGAVMNTCNVEEGTTVAVFGLGAVGLAAIQAAKARKAS
RIFAIDINESKFKLAKELGATDCINPKDSETPIQKAAHRGWGESCVIGVA
AAGHEISTRPFQLVTGR
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mRNA from alignment at H-elongata_contig111713:1154..2054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111713.953.1 ID=mRNA_H-elongata_contig111713.953.1|Name=mRNA_H-elongata_contig111713.953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at H-elongata_contig111713:1154..2054+ (Himanthalia elongata Himel1 dioecious)
CAGGTCTGCCTATTCGGCTGCGGTATATCCACGGGCCTCGGGGCGGTCAT GAACACATGCAACGTTGAGGAGGGCACCACCGTCGCCGTCTTCGGGCTCG GAGCCGTGGGGCTCGCGGCGATTCAGGCTGCCAAGGCCCGGAAGGCCTCC AGGATTTTCGCGATCGACATCAACGAGTCCAAGTTCAAGCTCGCCAAGGA GCTTGGCGCCACGGACTGCATCAACCCCAAGGATAGCGAGACACCAATCC AAAAGGTGGCCGGGTCGAGGTTGGGGAGGGGCTGGGATCGCGTTGCGGTG GGTGTGTCTCACGCCTTCTAGGGTTCTCCACCGGATGTCCAACAAGAATA GTTCCAAAGGGTGACCGGCTCCGTCGTTAACCGCCCGCTCGGCCATAGGC TGGACTATGATGTGTCGTAGAGGTGTGGGTGGGGGGTGGCGGGGGGGCAG GGGTGGGGACCTGGGAGCTCTGGGGGAATTGGTTCATATCTTGGGGGTGG AAGGGGCGTATGATGCTGTTGACGCGCGTGTCGTTGCCCGTGCCTTGTTT ATTTACATATTATGTGCCTCGTAGCAAGAGACTAGAGTGGTGGTAGATTT TTGGGTTCCACAACCGCCCCGATGTATCACGCCCCCCCCCCTTCCCTTCT TCCCACATTTTCCGTCGTAATATACTTTACATCTGTATACCGGTATGATG ATATATAAAAACGTTGCGCAGATTCTCGTGAAGGAGACCAAGTGGGGGGT GGACTACACGTTCGACGCTACCGGGAACGTGGGGGTGATGCGGGCGGCGC TGGAGGCCGCACACAGGGGGTGGGGCGAGTCATGCGTCATCGGCGTGGCT GCCGCGGGTCACGAGATCTCCACCCGGCCGTTTCAGCTGGTGACGGGAAG G
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Coding sequence (CDS) from alignment at H-elongata_contig111713:1154..2054+

>mRNA_H-elongata_contig111713.953.1 ID=mRNA_H-elongata_contig111713.953.1|Name=mRNA_H-elongata_contig111713.953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig111713:1154..2054+ (Himanthalia elongata Himel1 dioecious)
CAGGTCTGCCTATTCGGCTGCGGTATATCCACGGGCCTCGGGGCGGTCAT
GAACACATGCAACGTTGAGGAGGGCACCACCGTCGCCGTCTTCGGGCTCG
GAGCCGTGGGGCTCGCGGCGATTCAGGCTGCCAAGGCCCGGAAGGCCTCC
AGGATTTTCGCGATCGACATCAACGAGTCCAAGTTCAAGCTCGCCAAGGA
GCTTGGCGCCACGGACTGCATCAACCCCAAGGATAGCGAGACACCAATCC
AAAAGCAGGTCTGCCTATTCGGCTGCGGTATATCCACGGGCCTCGGGGCG
GTCATGAACACATGCAACGTTGAGGAGGGCACCACCGTCGCCGTCTTCGG
GCTCGGAGCCGTGGGGCTCGCGGCGATTCAGGCTGCCAAGGCCCGGAAGG
CCTCCAGGATTTTCGCGATCGACATCAACGAGTCCAAGTTCAAGCTCGCC
AAGGAGCTTGGCGCCACGGACTGCATCAACCCCAAGGATAGCGAGACACC
AATCCAAAAGGCCGCACACAGGGGGTGGGGCGAGTCATGCGTCATCGGCG
TGGCTGCCGCGGGTCACGAGATCTCCACCCGGCCGTTTCAGCTGGTGACG
GGAAGGGCCGCACACAGGGGGTGGGGCGAGTCATGCGTCATCGGCGTGGC
TGCCGCGGGTCACGAGATCTCCACCCGGCCGTTTCAGCTGGTGACGGGAA
GG
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