mRNA_H-elongata_contig11164.949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11164.949.1
Unique NamemRNA_H-elongata_contig11164.949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: D8LCC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC7_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 2.070e-126
Identity = 208/412 (50.49%), Postives = 263/412 (63.83%), Query Frame = 1
Query:   16 QEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAAVTSRRSLRAKVDEG----------------KDLA------------CTMACGG-VGAELPVGS-----------STVCD-ATCTKR------GRFGGYLCGAGNSVKFGAMCRLCFNDIEEARKAERRLTDGK---------HVIMCDTMRPPAAVDCKDECALKKDTVCDEACGTGLYGDYNCSWRNLGAKCRSCFDNMEAALKADEAAKRHGGRVIMCDT 1083
            QE+VYPKGPSVQFYK+FLE+ ++ +L  + A+A+IEWDVLVA D+SFEKLY AAF+  E FWVKGS L GTNFH T    D WH+LGHINGNAIY N+DP F +FV++T +RWGY Y YDVALWAT+SDFPYSWPLWQRFS+KFV+TNLI+NVG+  VD+  V +A+A  ++FIHGS+   G    +  A   +    A   EG                +D+             C   CG  V  +L  G            +TVCD ATC+        G+ G + CGAG+  +FG  CR C+ D EEA KA+R L +           HVIMCDT+RPP A  C  +CA KKDT+CD+ C +GL+G+YNC+WR+ G  CR CFD+  AA+ AD+AAKR GGRVIMC+T
Sbjct:   28 QENVYPKGPSVQFYKLFLEDTIKEKLERFGAIAVIEWDVLVAHDKSFEKLYVAAFDVVEPFWVKGSILAGTNFHGTVTITDNWHMLGHINGNAIYNNSDPAFADFVEFTLARWGYSYSYDVALWATVSDFPYSWPLWQRFSSKFVSTNLIANVGFLDVDQETVGNALASETMFIHGSLTGGGGTQFASGATAEKGGNAAAASEGGNSLRIMASLEANAAGEDVGGGGPSTRLATPECRTECGSTVSWDLLGGXXXXXXDGVMDMATVCDHATCSAATAGSADGKPGAWSCGAGDEERFGKHCRPCYFDAEEALKADRVLQNQTREASEEQPHHVIMCDTLRPPEASTCSLKCATKKDTICDDRCKSGLFGNYNCNWRDHGEHCRFCFDDTAAAIVADKAAKRTGGRVIMCNT 439          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: A0A6H5JKY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY0_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 5.990e-118
Identity = 207/448 (46.21%), Postives = 263/448 (58.71%), Query Frame = 1
Query:   16 QEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAAVTSRRSLRAKVDEG----------------KDLA------------CTMACG----------GVGAELPVGSSTVCD-ATCTKR------GRFGGYLCGAGNSVKFGAMCRLCFNDIEEARKAERRLTDG---------KHVIMCDTMRPPAAVDCKDECALKKDT------------------------VCDEACGTGLYGDYNCSWRNLGA--------------KCRSCFDNMEAALKADEAAKRHGGRVIMCDT 1083
            QE+VYPKGPSVQFYK+FLE+  + +L  + A+AI+EWDV VA D+SFEKLY AAF+  E FWVKGS L GTNFH TA   D W +LGHINGNAIY N+DP F +FV++T +RWGY Y YDVALWAT+SDFPYSWPLWQRFS+KFV+TNLI+NVG+  VD+  + +A+A  ++FIHGS+   G    +  A   +    A   EG                +D+             C   CG          G G +  +  +TVCD ATC+        G+ G + CGAG+  +FG  CR C+ D EEA KA+R L +          +HVIMCDT+RPP A  C  +CALKKDT                        +CD+ C +GL+G+YNC+WR+ GA               CR CFD+  AA+ ADE AKR GGRVIMC+T
Sbjct:   28 QENVYPKGPSVQFYKLFLEDTFKEKLERFGAIAIMEWDVRVAHDKSFEKLYIAAFDVVEPFWVKGSVLAGTNFHGTATITDNWRMLGHINGNAIYNNSDPAFADFVEFTLARWGYSYSYDVALWATVSDFPYSWPLWQRFSSKFVSTNLIANVGFLDVDQETLGNALASETMFIHGSLSGGGGTQFASGATAEKGGNAAAASEGGNSLRIMASLEANAAGEDVGGGGPSIRLATPECRTECGSTVSWDLLGGGGGEDGVMDIATVCDHATCSAATAGSADGKPGAWSCGAGDEERFGKHCRSCYFDAEEALKADRILQNQAREVGEVQPRHVIMCDTLRPPEASTCSLKCALKKDTARTNSSMRPPEPHVNPVWLYVPPQICDDRCESGLFGNYNCNWRDHGALLWTQMILFTPAPEHCRFCFDDTAAAIVADETAKRMGGRVIMCNT 475          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 5.110e-96
Identity = 171/326 (52.45%), Postives = 211/326 (64.72%), Query Frame = 1
Query:    4 NARLQEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAA--------VTSRRSLRAKV----------------------------DEGKDLACTMACGGVGAELPVGSSTVCDATCTKRGRFGGYLCGAGNSVKFGAMCRLCFNDIEEARKAERRLTDGKHVIMCDTMRP 873
            N   ++D+YP+GPSV FY MFL+E VR  L+ Y AL+IIEWDVLVA+D SFE+LY+AAF   E+FWVKGSNLEGT+FH  A + +MWHVLGHINGNAIY N+DP F E+V+YTR+RWGY++PYDVALW TISDFPYSWPL+QR+S+KFV TNLIS+VGYEHV+   V+DAVAG +LFIHGS VDEG++AS +A          TS+R L   V                            D   +  C   C     +   G   VCD+ C+    +G   CGA N  K+GA CR C+ND E+ARK +   T G   IMC T  P
Sbjct:  103 NLAEEDDIYPQGPSVMFYNMFLDESVRSSLSGYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSNADAIEMWHVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGYEHVNHDTVSDAVAGKTLFIHGSSVDEGNVASYEATEGDAAVDVATSQRQLTEDVPKWQAQEKWRNTSXXXXXXXXXXKKQYEDSSDEEGCMDGCEYTSKDGTRGR--VCDSNCSSPNVYGTLGCGAKNG-KYGADCRACYNDDEKARKQD---TPGNRAIMCSTKMP 422          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 5.910e-94
Identity = 167/348 (47.99%), Postives = 213/348 (61.21%), Query Frame = 1
Query:    4 NARLQEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAA--------VTSRRSLRAKVDEGKDL---------------------------------------------ACTMACGGVGAELPVGSSTVCDATCTKRGRFGGYLCGAGNSVKFGAMCRLCFNDIEEARKAERRLTDGKHVIMCDTMRPPAAVD 888
            N   ++D+YP+GPSV FY MFL+EDVR  L+ Y AL+IIEWDVLVA+D SFE+LY+AAF   E+FWVKGSNLEGT+FH  A + +MW +LGHINGNAIY N+DP F E+V+YTR+RWGY++PYDVALW TISDFPYSWPL+QR+S+KFV TNLIS+VGYEHV+   V+DA+AG +LFIHGS VDEG++AS +A           ++R L   V + K+                                               C   C     +   G   VCD+ C++   +G   CGA  S K+GA CR C+ND+E+ARK +   T     IMC T  P    D
Sbjct:  101 NLAEEDDIYPQGPSVMFYNMFLDEDVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSNADAIEMWQLLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGYEHVNHDTVSDAIAGNTLFIHGSSVDEGNVASYEATEGDASVDVTATQRHLTEDVPKWKEQEKWKTSXXXXXXXXXXXXXETDDGVXXXXXXXXXXXXXXXSPDEEGCMNGCEYTSKDGTRGR--VCDSNCSRSDAYGTLGCGA-KSGKYGADCRACYNDVEKARKQD---TPANRAIMCSTKMPVDVYD 442          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: A0A6H5KZV7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV7_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 3.100e-92
Identity = 164/295 (55.59%), Postives = 197/295 (66.78%), Query Frame = 1
Query:    4 NARLQEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMA--SSKAAVTSRRSLRAKVDEGKDLACTMACGGVGAELPVGS-----STVCDATCTKRG----RFGGYLCGAGNSVKFGAMCRLCFNDIEEARKAERRLTDGKHVIM 855
            N   +E+VYPKGPSVQFYK++L+ +VR QL  Y ALAIIEWDV+VA D SFEKLY AAF   E FW+KGS LEG NFH T    +  HVLGHINGNAIY N DP F EFV+YT +RW Y   YDVALWATISDFPYSWPLWQRFS KFV  +LI+NVG++ +D+ AV  AVA  +LFIHGS+   G     +S A   S  +LR          CT +CGG GA    G      +TVCD +C   G    RFGGYLCGAG+  ++G+ CR CF D+EEA+ AE +L + +   M
Sbjct:  195 NLSQEENVYPKGPSVQFYKLYLDSNVRRQLIEYDALAIIEWDVIVAHDTSFEKLYAAAFGGVEPFWIKGSTLEGVNFHETVVLPESRHVLGHINGNAIYNNTDPAFVEFVNYTLTRWEYTQSYDVALWATISDFPYSWPLWQRFSRKFVAIDLIANVGFQDMDQQAVLKAVASNTLFIHGSLTGGGGSMFHASGAKADSSPALRFLGKNRPGERCTASCGG-GAPPSSGVGAGALATVCDRSCYSGGELGARFGGYLCGAGDIKEYGSHCRTCFTDMEEAQAAEEQLAEEEQAAM 488          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.290e-90
Identity = 165/346 (47.69%), Postives = 211/346 (60.98%), Query Frame = 1
Query:    4 NARLQEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAAVTSRRSLR--AKVDEGKDL------------------------------------------------------ACTMACGGVGAELPVGSSTVCDATCTKRGRFGGYLCGAGNSVKFGAMCRLCFNDIEEARKAERRLTDGKHVIMCDTMRP 873
            N   ++D+YPKGPSV FYKMFL+E+VR  L+ Y AL+I+EWDVLVA+D SFE+LY+AAF   E+FWVKGSNLEGT+FH +A +++MW VLGHINGNAIY N+DP F E+V+YTR+RWGY++PYDVALW TISDFPYSWPL+QR+S+KFV TNLIS VGYEHV    V+DAVAG +LFIHGS V++G++AS +A  ++  +    AK   G+ L                                                      AC+  C     +   G   VCDA C+    +G   C A     +G  CR CFND+++ARK +   T     IMC T RP
Sbjct:  102 NLAEEDDIYPKGPSVMFYKMFLDENVRSSLSEYDALSIVEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISYVGYEHVSHDTVSDAVAGKTLFIHGSSVEDGNVASYEAVASTATATVDVAKQTRGRKLTGSTPKWKTQEKWRSSKDDSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACSSTCEYTSRDGTRGR--VCDANCSTPDVYGTRGCNAKQGT-YGEECRACFNDVDKARKQD---TPENRSIMCSTKRP 441          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.600e-88
Identity = 140/188 (74.47%), Postives = 160/188 (85.11%), Query Frame = 1
Query:   16 QEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSK 579
            +EDVYPKGPSV F+KMFL+E V  +L+ Y ALAIIEWDVLVATD+SFE+LY+AAF   E+FWVKGSNLEGTNFH +A   DMW V+GHINGNAIY NNDP F E+VDYTR+R+ Y+YPYDVALW TISDFPYSWPL+QR+S KFVTTNLIS VGYEHVD   V+DA+AG +LFIHGS VDEGS AS K
Sbjct:   50 EEDVYPKGPSVMFFKMFLDEGVHAELSEYDALAIIEWDVLVATDRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSADVTDMWRVMGHINGNAIYNNNDPAFAEYVDYTRARFKYRYPYDVALWLTISDFPYSWPLYQRYSRKFVTTNLISYVGYEHVDHDTVSDAIAGQTLFIHGSRVDEGSGASIK 237          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.710e-85
Identity = 134/183 (73.22%), Postives = 153/183 (83.61%), Query Frame = 1
Query:   16 QEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGS 564
            ++DVYP+GPSV FYKMFL+E +R   + Y ALAI+EWDVLVATD+SFE+LY+AAF   E+FWVKGSNLEGTNFH ++  +DMWHVLGHINGNAIY N D  F E+VDYTRSRW Y YPYDVALW TISDFPYSWPL+QRFSNKFVTTNLI+ VG  HVD G V DA+AG +LFIHG  VDEGS
Sbjct:  118 EDDVYPRGPSVMFYKMFLDERIRSNFSEYDALAILEWDVLVATDRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSSMMSDMWHVLGHINGNAIYNNKDQAFVEYVDYTRSRWEYNYPYDVALWLTISDFPYSWPLYQRFSNKFVTTNLIAYVGKAHVDHGTVTDAIAGQTLFIHGKNVDEGS 300          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 4.030e-85
Identity = 134/194 (69.07%), Postives = 165/194 (85.05%), Query Frame = 1
Query:    4 NARLQEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAA 585
            N   ++D+YP+GPSV FY MFL+E VR  L+ Y AL+IIEWDVLVA+D SFE+LY+AAF   E+FWVKGSNLEGT+FH TA +++MW VLGHINGNAIY N+DP F E+V+YTRSRWGY++PYDVALW TISDFPYSWPL+QR+S+KFV TNLIS+VG+EHV    V+DAVAG +LFIHGS V+EG++AS +AA
Sbjct:  105 NLAQEDDIYPRGPSVMFYNMFLDESVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSTAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRSRWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGFEHVGHDMVSDAVAGQTLFIHGSSVEEGNVASFRAA 298          
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Match: D8LLE5_ECTSI (Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE5_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 4.920e-80
Identity = 125/171 (73.10%), Postives = 142/171 (83.04%), Query Frame = 1
Query:   52 FYKMFLEEDVRVQLANYAALAIIEWDVLVATDQSFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIYKNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFVTTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGS 564
            FYK+FL+E +R   + Y ALAIIEWDVLVATD+SFE+LY+AAF   E+FWVKGSNLEGTNFH ++  +DMWHVLGHINGNAIY NND  F E+VDYTR+RW   YPYDVALW TISDFPYSWPL+QRFSNKFVTTNLI+ VG  HVD G V DA+AG +LFIHG  VDEGS
Sbjct:    2 FYKLFLDERIRSNFSEYDALAIIEWDVLVATDRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSSMMSDMWHVLGHINGNAIYNNNDQAFVEYVDYTRARWEDNYPYDVALWLTISDFPYSWPLYQRFSNKFVTTNLIAYVGKAHVDHGTVTDAIAGQTLFIHGKNVDEGS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11164.949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LCC7_ECTSI2.070e-12650.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKY0_9PHAE5.990e-11846.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI37_ECTSI5.110e-9652.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJP6_9PHAE5.910e-9447.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZV7_9PHAE3.100e-9255.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FI63_ECTSI2.290e-9047.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FR80_ECTSI1.600e-8874.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSN3_9PHAE1.710e-8573.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI39_ECTSI4.030e-8569.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLE5_ECTSI4.920e-8073.10Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11164contigH-elongata_contig11164:6606..8782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.6
Seed ortholog evalue4.5e-88
Seed eggNOG ortholog2880.D7FI37
EggNOG OGs2D0G2@1,2SE3H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1086
Cds size1086
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11164.949.1prot_H-elongata_contig11164.949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11164 6606..8782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.2100935-CDS-H-elongata_contig11164:6605..70671622929639.2100935-CDS-H-elongata_contig11164:6605..7067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11164 6606..7067 +
1691679101.434312-CDS-H-elongata_contig11164:6605..70671691679101.434312-CDS-H-elongata_contig11164:6605..7067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11164 6606..7067 +
1622929639.2266529-CDS-H-elongata_contig11164:7522..79811622929639.2266529-CDS-H-elongata_contig11164:7522..7981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11164 7523..7981 +
1691679101.4456627-CDS-H-elongata_contig11164:7522..79811691679101.4456627-CDS-H-elongata_contig11164:7522..7981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11164 7523..7981 +
1622929639.2447486-CDS-H-elongata_contig11164:8617..87821622929639.2447486-CDS-H-elongata_contig11164:8617..8782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11164 8618..8782 +
1691679101.453824-CDS-H-elongata_contig11164:8617..87821691679101.453824-CDS-H-elongata_contig11164:8617..8782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11164 8618..8782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11164.949.1

>prot_H-elongata_contig11164.949.1 ID=prot_H-elongata_contig11164.949.1|Name=mRNA_H-elongata_contig11164.949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
MNARLQEDVYPKGPSVQFYKMFLEEDVRVQLANYAALAIIEWDVLVATDQ
SFEKLYNAAFESTEDFWVKGSNLEGTNFHVTAASNDMWHVLGHINGNAIY
KNNDPGFTEFVDYTRSRWGYKYPYDVALWATISDFPYSWPLWQRFSNKFV
TTNLISNVGYEHVDKGAVADAVAGGSLFIHGSMVDEGSMASSKAAVTSRR
SLRAKVDEGKDLACTMACGGVGAELPVGSSTVCDATCTKRGRFGGYLCGA
GNSVKFGAMCRLCFNDIEEARKAERRLTDGKHVIMCDTMRPPAAVDCKDE
CALKKDTVCDEACGTGLYGDYNCSWRNLGAKCRSCFDNMEAALKADEAAK
RHGGRVIMCDT*
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mRNA from alignment at H-elongata_contig11164:6606..8782+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11164.949.1 ID=mRNA_H-elongata_contig11164.949.1|Name=mRNA_H-elongata_contig11164.949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2177bp|location=Sequence derived from alignment at H-elongata_contig11164:6606..8782+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCGCGCCTCCAGGAGGATGTTTACCCCAAGGGCCCGTCCGTACA ATTCTACAAGATGTTCCTCGAAGAGGACGTCCGGGTGCAACTTGCGAATT ACGCCGCCCTTGCTATCATTGAGTGGGACGTTCTTGTGGCGACGGATCAG TCCTTCGAGAAGCTTTACAATGCCGCCTTCGAATCCACCGAGGATTTCTG GGTGAAGGGCAGCAACCTCGAGGGAACCAACTTCCACGTCACCGCCGCAT CTAATGATATGTGGCACGTACTCGGCCACATCAACGGTAACGCCATCTAC AAGAACAATGACCCGGGCTTCACCGAATTCGTCGACTACACACGCTCGCG CTGGGGGTATAAGTACCCCTACGACGTCGCGCTGTGGGCTACCATCTCAG ACTTTCCTTATAGCTGGCCCCTTTGGCAGCGTTTCTCCAACAAATTCGTC ACCACCAACCTGGTGAGATACAACTTGGGATGCTTGCACCGACGATATAA TAAGGTCGGGGATGGACCGATTCGTACCTAGTTGTGGTAAGTGGCGTACA CATCAGAGTTTTAGAGGACGACAATTTTGTCGTGAACGATTAGTATTTTT ATAACTCTCATGGCGTCTGTATCGGGCGCAAAACTTTAATATGCTTAGAG ATATTTAAATATCAGTAATAATGTCGTCACCTTTGAAATCCGAGCAAAAT ATTTTACGTACAATTGTGAGTCAAAGTGTTCCATCAAAGTAGTCTCATCT GGCAGAAGTGAGTCAAAGCTAATGCCTTCTCATTAAATGGCATTTCATTC TATCAACTACGTAGAGTTTGTTCTTAGGCTTTCTCATAATGAGAACGTGT GCGGTTCCTAATCACGGTAAAATTCCTCCCGTAAAATTGTTTGCAATGTT GTCGATGTATCTCTTAGATATCTAACGTCGGCTACGAGCATGTTGACAAG GGAGCCGTGGCTGACGCTGTTGCTGGTGGAAGTCTATTTATCCACGGCAG CATGGTCGACGAGGGTAGCATGGCCTCTTCAAAAGCCGCCGTCACTTCTC GCCGCTCTCTCCGTGCAAAAGTAGACGAGGGAAAAGATCTCGCGTGCACG ATGGCGTGCGGAGGAGTTGGAGCCGAGCTTCCCGTTGGTAGCTCTACCGT GTGCGACGCGACCTGCACTAAACGTGGTCGCTTTGGTGGCTACCTCTGTG GAGCCGGAAACTCGGTCAAGTTTGGTGCCATGTGCCGTCTGTGTTTCAAC GATATCGAGGAAGCACGTAAGGCTGAGAGGCGGCTTACGGATGGAAAACA CGTCATCATGTGTGACACTATGCGTCCACCGGCTGCAGTTGACTGCAAGG ATGAATGTGCCCTCAAGAAAGACACGGTGAGGATACCACTATACTTTTCC GCGCCTCTATAAGCCCTCCAGGTCGAAGTCAAACAAAGTTTTATTAATAG GTCTATTTCACTCCGTTTACCTTGTAGTTGGTTTGTCATTGGATTGTATT GTTGGATACCTCTGATAAATTATAGATTTCCTTTTTCTTGTTGTGTCCCT TCTATTTTAGCGTCGGCTCCCTCTTTTGACTATATCTCTAATTGCGCATA TGTCCCCTGTGCATTTGGGCAGCTTATTTCTCACTCGCTTTGCTCTGTAC CATGTCGGACAGTTATATGCATGAAATGCAACTCTCAACGGCACTGATTA CTATATATATATATATTCATGAAACGCAACTCTCAGGGGTACTGCTTCGT TGTCTCAAGTCATGAGATGAAGCCCTTTTTAAGACAAGCTTAGTTGACAA ATTTATGAGTCGGCGTTACCTTACCTGCTCCAAACCCCGAAGGGCCATTA ACAGTACGAGATTATTCAATGATAAGAAAACACCTCACTGCACAAAAAGA CGAACATTACAACGATTCAACGGACATGTTTGACGCTCTTCGGACGCCAG AGATGCTTACTTGGCAGTATATGATGAATTTATTTTGTATTATATCTTCG ACGACGGGCTAGGTCTGCGACGAGGCGTGCGGAACCGGTCTATATGGTGA CTACAACTGCAGCTGGAGAAATCTTGGCGCCAAGTGTCGCTCCTGCTTCG ACAACATGGAAGCGGCACTCAAGGCCGACGAGGCTGCCAAACGCCACGGC GGGCGGGTCATCATGTGTGACACGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig11164:6606..8782+

>mRNA_H-elongata_contig11164.949.1 ID=mRNA_H-elongata_contig11164.949.1|Name=mRNA_H-elongata_contig11164.949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2172bp|location=Sequence derived from alignment at H-elongata_contig11164:6606..8782+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCGCGCCTCCAGGAGGATGTTTACCCCAAGGGCCCGTCCGTACA
ATTCTACAAGATGTTCCTCGAAGAGGACGTCCGGGTGCAACTTGCGAATT
ACGCCGCCCTTGCTATCATTGAGTGGGACGTTCTTGTGGCGACGGATCAG
TCCTTCGAGAAGCTTTACAATGCCGCCTTCGAATCCACCGAGGATTTCTG
GGTGAAGGGCAGCAACCTCGAGGGAACCAACTTCCACGTCACCGCCGCAT
CTAATGATATGTGGCACGTACTCGGCCACATCAACGGTAACGCCATCTAC
AAGAACAATGACCCGGGCTTCACCGAATTCGTCGACTACACACGCTCGCG
CTGGGGGTATAAGTACCCCTACGACGTCGCGCTGTGGGCTACCATCTCAG
ACTTTCCTTATAGCTGGCCCCTTTGGCAGCGTTTCTCCAACAAATTCGTC
ACCACCAACCTGATGAACGCGCGCCTCCAGGAGGATGTTTACCCCAAGGG
CCCGTCCGTACAATTCTACAAGATGTTCCTCGAAGAGGACGTCCGGGTGC
AACTTGCGAATTACGCCGCCCTTGCTATCATTGAGTGGGACGTTCTTGTG
GCGACGGATCAGTCCTTCGAGAAGCTTTACAATGCCGCCTTCGAATCCAC
CGAGGATTTCTGGGTGAAGGGCAGCAACCTCGAGGGAACCAACTTCCACG
TCACCGCCGCATCTAATGATATGTGGCACGTACTCGGCCACATCAACGGT
AACGCCATCTACAAGAACAATGACCCGGGCTTCACCGAATTCGTCGACTA
CACACGCTCGCGCTGGGGGTATAAGTACCCCTACGACGTCGCGCTGTGGG
CTACCATCTCAGACTTTCCTTATAGCTGGCCCCTTTGGCAGCGTTTCTCC
AACAAATTCGTCACCACCAACCTGATATCTAACGTCGGCTACGAGCATGT
TGACAAGGGAGCCGTGGCTGACGCTGTTGCTGGTGGAAGTCTATTTATCC
ACGGCAGCATGGTCGACGAGGGTAGCATGGCCTCTTCAAAAGCCGCCGTC
ACTTCTCGCCGCTCTCTCCGTGCAAAAGTAGACGAGGGAAAAGATCTCGC
GTGCACGATGGCGTGCGGAGGAGTTGGAGCCGAGCTTCCCGTTGGTAGCT
CTACCGTGTGCGACGCGACCTGCACTAAACGTGGTCGCTTTGGTGGCTAC
CTCTGTGGAGCCGGAAACTCGGTCAAGTTTGGTGCCATGTGCCGTCTGTG
TTTCAACGATATCGAGGAAGCACGTAAGGCTGAGAGGCGGCTTACGGATG
GAAAACACGTCATCATGTGTGACACTATGCGTCCACCGGCTGCAGTTGAC
TGCAAGGATGAATGTGCCCTCAAGAAAGACACGATATCTAACGTCGGCTA
CGAGCATGTTGACAAGGGAGCCGTGGCTGACGCTGTTGCTGGTGGAAGTC
TATTTATCCACGGCAGCATGGTCGACGAGGGTAGCATGGCCTCTTCAAAA
GCCGCCGTCACTTCTCGCCGCTCTCTCCGTGCAAAAGTAGACGAGGGAAA
AGATCTCGCGTGCACGATGGCGTGCGGAGGAGTTGGAGCCGAGCTTCCCG
TTGGTAGCTCTACCGTGTGCGACGCGACCTGCACTAAACGTGGTCGCTTT
GGTGGCTACCTCTGTGGAGCCGGAAACTCGGTCAAGTTTGGTGCCATGTG
CCGTCTGTGTTTCAACGATATCGAGGAAGCACGTAAGGCTGAGAGGCGGC
TTACGGATGGAAAACACGTCATCATGTGTGACACTATGCGTCCACCGGCT
GCAGTTGACTGCAAGGATGAATGTGCCCTCAAGAAAGACACGGTCTGCGA
CGAGGCGTGCGGAACCGGTCTATATGGTGACTACAACTGCAGCTGGAGAA
ATCTTGGCGCCAAGTGTCGCTCCTGCTTCGACAACATGGAAGCGGCACTC
AAGGCCGACGAGGCTGCCAAACGCCACGGCGGGCGGGTCATCATGTGTGA
CACGTAAGTCTGCGACGAGGCGTGCGGAACCGGTCTATATGGTGACTACA
ACTGCAGCTGGAGAAATCTTGGCGCCAAGTGTCGCTCCTGCTTCGACAAC
ATGGAAGCGGCACTCAAGGCCGACGAGGCTGCCAAACGCCACGGCGGGCG
GGTCATCATGTGTGACACGTAA
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