mRNA_H-elongata_contig11127.924.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A1I2I2Z7_9DELT (NADAR domain-containing protein n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2I2Z7_9DELT) HSP 1 Score: 144 bits (363), Expect = 6.170e-41 Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHV 453
++ +VLFW PP++ QWTPSRFV D V A QFMMA KARL GD+ + I+ D P LGRQV F D W + I+++GN A F+QN +MR L TG + LVEA+ D+ WG+GLRA DPR P+ W LLG+ + V
Sbjct: 14 TETMVLFWQPPAVFGQWTPSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILAADSPRTHKALGRQVAGFSQDVWDRECLGIVVRGNRAKFAQNPDMRAALLATGGKLLVEASPLDRLWGVGLRADDPRIHDPNQWRGKNLLGEALMRV 164
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.150e-38 Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHV 453
S D++ FW PPS+ SQWTPS FV D V+ + A Q+MMA KA+L GD+ + I+ T P E LGR V + + W + I+ +GN A F+QNE M L TG++ L EA+ +D+ WGIGLRA +P A TP +W LLG ++ V
Sbjct: 57 SPDLLFFWQPPSVFSQWTPSVFVVDNVQYSCAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQNVWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGLRADNPAARTPSSWRGQNLLGDILQEV 207
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A4R4SH62_9ACTN (NADAR family protein n=1 Tax=Actinomadura sp. GC306 TaxID=2530367 RepID=A0A4R4SH62_9ACTN) HSP 1 Score: 130 bits (328), Expect = 1.140e-35 Identity = 70/147 (47.62%), Postives = 88/147 (59.86%), Query Frame = 1
Query: 7 DVVLFW-HP---PSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLG 435
+ V FW H P +SQW PS F D V +A +MMA KARL GDD +AI+ + DP LGR+VR F TW++ I+ +GN A F+Q+ +MR L T R LVEA+ D+ WGIGLRA DPRA TPD+W LLG
Sbjct: 17 EFVFFWGHETPGPGFLSQWCPSPFTVDGVTYATAEHYMMAEKARLFGDDQRAAAILTSPDPRRAKDLGRRVRNFDERTWKEHRVAIVTRGNEAKFAQHPDMRDYLLSTHPRVLVEASPRDRIWGIGLRADDPRAKTPDSWQGENLLG 163
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A836CP42_9STRA (NADAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP42_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.650e-33 Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 10 VVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWKIL 465
+VLFW PP + QWTPS F V + A Q+MMA KARL L+ I+ T DP + LGR V F S+ W++ +++ GN A F+QN +R L TG R LVEA+ HD+ WGIGL A+DP+A W LGQ + V +++
Sbjct: 1 MVLFWQPPGFLVQWTPSPFQIAGVAYSCAEQWMMACKARLFNARDVLAQILATADPEQHKRLGRAVPNFNSELWERHSLQVVIHGNYAKFTQNAALRRELVDTGSRLLVEASPHDRVWGIGLAANDPKALDERRWRGTNKLGQALMVVRQLI 152
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A1Q2CZD5_9ACTN (NADAR domain-containing protein n=1 Tax=Tessaracoccus flavescens TaxID=399497 RepID=A0A1Q2CZD5_9ACTN) HSP 1 Score: 122 bits (306), Expect = 3.330e-32 Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 7 DVVLFW-HPPS-------IVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWKILR 468
D +LFW H S +SQW P+RF D V +A Q+MMA KAR DD L+ I+ +D P + LGRQVR F + W++ I+++GN+A F QN ++R L TGDR +VEA+ D+ WGIGLRA+ RA P W LLG + ILR
Sbjct: 22 DPLLFWGHAESHGRVTQACLSQWYPARFTVDGVHYTTAEQYMMAGKARRFRDDEVLARILASDSPRQIKQLGRQVRGFVARDWEETRFAIVVEGNVAKFGQNPDLRDFLLDTGDRLIVEASPVDEVWGIGLRATHARARDPRQWRGLNLLGFALMEARSILR 183
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A6H5L3B4_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B4_9PHAE) HSP 1 Score: 126 bits (317), Expect = 5.230e-32 Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 1
Query: 1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVH--TLLGQTVEHVWKILR 468
SDDV+LFW PPS+ SQWTPS F V + QFMM+ KA+L GD + I+ DP LGR VR F W++ E I+L G+ A F+QN +M+ L TG R L EA+ D+ WGIG+ A P AS W LLG+ + V ++LR
Sbjct: 75 SDDVLLFWKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDLTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRFWGIGMSACFPDASVSSKWAASGKNLLGKALMEVRRLLR 232
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A371YUE5_9GAMM (NADAR family protein n=1 Tax=Acinetobacter sichuanensis TaxID=2136183 RepID=A0A371YUE5_9GAMM) HSP 1 Score: 121 bits (304), Expect = 5.650e-32 Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 34 SIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWK 459
S SQW PS+F D V+ + Q+MMA KA+L GDD L+ I+ T DP E LGR V+ +Q W + I++QGN+A FSQNE+++ L TG+R LVEA+ DK WGIGL A D +A P W LLG + V K
Sbjct: 39 SCFSQWFPSKFEVDGVQYKNTEQYMMAQKAKLFGDDEILNKILRTADPKEIKVLGRLVKGYQESVWLEHRFNIVVQGNLAKFSQNEDLKQFLLNTGERVLVEASPVDKIWGIGLSAEDEKAEKPLQWKGLNLLGFALMEVRK 180
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A6H5JIZ7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ7_9PHAE) HSP 1 Score: 124 bits (311), Expect = 9.400e-32 Identity = 67/158 (42.41%), Postives = 90/158 (56.96%), Query Frame = 1
Query: 1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVH--TLLGQTVEHVWKILR 468
SDDV+LFW PPS+ SQWTPS F V + Q+MM+ KA+L GD + I+ DP LGR VR F W++ E I+L G+ A F+QN +M+ L TG R L E++ D+ WGIG+ A P AS W LLG+ + V ++LR
Sbjct: 75 SDDVLLFWKPPSVSSQWTPSVFNVLGVRYSCGEQYMMSEKAKLFGDMTSYDKIMAAPDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAESSPFDRVWGIGMSACFPEASVSSKWAASGKNLLGKALMEVRRLLR 232
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A0K1PK87_9DELT (GTP cyclohydrolase II n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PK87_9DELT) HSP 1 Score: 120 bits (302), Expect = 1.490e-31 Identity = 69/158 (43.67%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 7 DVVLFW-HPP--------SIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHV 453
D + FW H P S +SQW P+ FV D V +A FMMA KARL GDD ALS I+ P E LGR VR + D W +++GN+A F Q+E + L TG R LVEA+ HD+ WGIGL S+P A P W LLG + V
Sbjct: 18 DFLFFWGHTPKSPGRVDASCLSQWFPAPFVIDGVRYATAEHFMMAEKARLFGDDDALSNILAAKSPPEAKALGRTVRNYDDDAWSAARVDAVVRGNLAKFGQDEALGAFLRSTGRRILVEASPHDRIWGIGLGGSNPAAQQPSQWRGQNLLGFALTEV 175
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A6H5L1K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K5_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.690e-31 Identity = 70/153 (45.75%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 10 VVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWKILR 468
V+LFW PPSI SQWTPS F D VE + A QF ASKAR GD L I+ + DP GRQVR F W+K I+L G + FS N MR L TG+ L EA+ D GIG+RA P A+ P W LLG+ ++ V +LR
Sbjct: 42 VILFWQPPSIFSQWTPSTFSVDGVEYSCAEQFFAASKARHFGDKDMLHNIMLSSDPAMHKLYGRQVRGFTQQAWEKVKAYIVLVGTLEKFSHNPAMRQYLLKTGNSILAEASPFDNTRGIGMRADHPEAANPSNWTGKNLLGKALQSVRDLLR 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11127.924.1 >prot_H-elongata_contig11127.924.1 ID=prot_H-elongata_contig11127.924.1|Name=mRNA_H-elongata_contig11127.924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp MRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVback to top mRNA from alignment at H-elongata_contig11127:6923..7396- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11127.924.1 ID=mRNA_H-elongata_contig11127.924.1|Name=mRNA_H-elongata_contig11127.924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig11127:6923..7396- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11127:6923..7396- >mRNA_H-elongata_contig11127.924.1 ID=mRNA_H-elongata_contig11127.924.1|Name=mRNA_H-elongata_contig11127.924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig11127:6923..7396- (Himanthalia elongata Himel1 dioecious)back to top |