mRNA_H-elongata_contig11127.924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11127.924.1
Unique NamemRNA_H-elongata_contig11127.924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A1I2I2Z7_9DELT (NADAR domain-containing protein n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2I2Z7_9DELT)

HSP 1 Score: 144 bits (363), Expect = 6.170e-41
Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 1
Query:    1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHV 453
            ++ +VLFW PP++  QWTPSRFV D V    A QFMMA KARL GD+   + I+  D P     LGRQV  F  D W +    I+++GN A F+QN +MR  L  TG + LVEA+  D+ WG+GLRA DPR   P+ W    LLG+ +  V
Sbjct:   14 TETMVLFWQPPAVFGQWTPSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILAADSPRTHKALGRQVAGFSQDVWDRECLGIVVRGNRAKFAQNPDMRAALLATGGKLLVEASPLDRLWGVGLRADDPRIHDPNQWRGKNLLGEALMRV 164          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.150e-38
Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHV 453
            S D++ FW PPS+ SQWTPS FV D V+ + A Q+MMA KA+L GD+ +   I+ T  P E   LGR V  +  + W +    I+ +GN A F+QNE M   L  TG++ L EA+ +D+ WGIGLRA +P A TP +W    LLG  ++ V
Sbjct:   57 SPDLLFFWQPPSVFSQWTPSVFVVDNVQYSCAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQNVWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGLRADNPAARTPSSWRGQNLLGDILQEV 207          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A4R4SH62_9ACTN (NADAR family protein n=1 Tax=Actinomadura sp. GC306 TaxID=2530367 RepID=A0A4R4SH62_9ACTN)

HSP 1 Score: 130 bits (328), Expect = 1.140e-35
Identity = 70/147 (47.62%), Postives = 88/147 (59.86%), Query Frame = 1
Query:    7 DVVLFW-HP---PSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLG 435
            + V FW H    P  +SQW PS F  D V   +A  +MMA KARL GDD   +AI+ + DP     LGR+VR F   TW++    I+ +GN A F+Q+ +MR  L  T  R LVEA+  D+ WGIGLRA DPRA TPD+W    LLG
Sbjct:   17 EFVFFWGHETPGPGFLSQWCPSPFTVDGVTYATAEHYMMAEKARLFGDDQRAAAILTSPDPRRAKDLGRRVRNFDERTWKEHRVAIVTRGNEAKFAQHPDMRDYLLSTHPRVLVEASPRDRIWGIGLRADDPRAKTPDSWQGENLLG 163          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A836CP42_9STRA (NADAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP42_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.650e-33
Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   10 VVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWKIL 465
            +VLFW PP  + QWTPS F    V  + A Q+MMA KARL      L+ I+ T DP +   LGR V  F S+ W++    +++ GN A F+QN  +R  L  TG R LVEA+ HD+ WGIGL A+DP+A     W     LGQ +  V +++
Sbjct:    1 MVLFWQPPGFLVQWTPSPFQIAGVAYSCAEQWMMACKARLFNARDVLAQILATADPEQHKRLGRAVPNFNSELWERHSLQVVIHGNYAKFTQNAALRRELVDTGSRLLVEASPHDRVWGIGLAANDPKALDERRWRGTNKLGQALMVVRQLI 152          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A1Q2CZD5_9ACTN (NADAR domain-containing protein n=1 Tax=Tessaracoccus flavescens TaxID=399497 RepID=A0A1Q2CZD5_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 3.330e-32
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    7 DVVLFW-HPPS-------IVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWKILR 468
            D +LFW H  S        +SQW P+RF  D V   +A Q+MMA KAR   DD  L+ I+ +D P +   LGRQVR F +  W++    I+++GN+A F QN ++R  L  TGDR +VEA+  D+ WGIGLRA+  RA  P  W    LLG  +     ILR
Sbjct:   22 DPLLFWGHAESHGRVTQACLSQWYPARFTVDGVHYTTAEQYMMAGKARRFRDDEVLARILASDSPRQIKQLGRQVRGFVARDWEETRFAIVVEGNVAKFGQNPDLRDFLLDTGDRLIVEASPVDEVWGIGLRATHARARDPRQWRGLNLLGFALMEARSILR 183          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A6H5L3B4_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.230e-32
Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVH--TLLGQTVEHVWKILR 468
            SDDV+LFW PPS+ SQWTPS F    V  +   QFMM+ KA+L GD  +   I+   DP     LGR VR F    W++  E I+L G+ A F+QN +M+  L  TG R L EA+  D+ WGIG+ A  P AS    W      LLG+ +  V ++LR
Sbjct:   75 SDDVLLFWKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDLTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRFWGIGMSACFPDASVSSKWAASGKNLLGKALMEVRRLLR 232          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A371YUE5_9GAMM (NADAR family protein n=1 Tax=Acinetobacter sichuanensis TaxID=2136183 RepID=A0A371YUE5_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 5.650e-32
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   34 SIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWK 459
            S  SQW PS+F  D V+  +  Q+MMA KA+L GDD  L+ I+ T DP E   LGR V+ +Q   W +    I++QGN+A FSQNE+++  L  TG+R LVEA+  DK WGIGL A D +A  P  W    LLG  +  V K
Sbjct:   39 SCFSQWFPSKFEVDGVQYKNTEQYMMAQKAKLFGDDEILNKILRTADPKEIKVLGRLVKGYQESVWLEHRFNIVVQGNLAKFSQNEDLKQFLLNTGERVLVEASPVDKIWGIGLSAEDEKAEKPLQWKGLNLLGFALMEVRK 180          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A6H5JIZ7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ7_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.400e-32
Identity = 67/158 (42.41%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    1 SDDVVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVH--TLLGQTVEHVWKILR 468
            SDDV+LFW PPS+ SQWTPS F    V  +   Q+MM+ KA+L GD  +   I+   DP     LGR VR F    W++  E I+L G+ A F+QN +M+  L  TG R L E++  D+ WGIG+ A  P AS    W      LLG+ +  V ++LR
Sbjct:   75 SDDVLLFWKPPSVSSQWTPSVFNVLGVRYSCGEQYMMSEKAKLFGDMTSYDKIMAAPDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAESSPFDRVWGIGMSACFPEASVSSKWAASGKNLLGKALMEVRRLLR 232          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A0K1PK87_9DELT (GTP cyclohydrolase II n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PK87_9DELT)

HSP 1 Score: 120 bits (302), Expect = 1.490e-31
Identity = 69/158 (43.67%), Postives = 85/158 (53.80%), Query Frame = 1
Query:    7 DVVLFW-HPP--------SIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHV 453
            D + FW H P        S +SQW P+ FV D V   +A  FMMA KARL GDD ALS I+    P E   LGR VR +  D W       +++GN+A F Q+E +   L  TG R LVEA+ HD+ WGIGL  S+P A  P  W    LLG  +  V
Sbjct:   18 DFLFFWGHTPKSPGRVDASCLSQWFPAPFVIDGVRYATAEHFMMAEKARLFGDDDALSNILAAKSPPEAKALGRTVRNYDDDAWSAARVDAVVRGNLAKFGQDEALGAFLRSTGRRILVEASPHDRIWGIGLGGSNPAAQQPSQWRGQNLLGFALTEV 175          
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Match: A0A6H5L1K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.690e-31
Identity = 70/153 (45.75%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   10 VVLFWHPPSIVSQWTPSRFVGDPVECNSAAQFMMASKARLVGDDMALSAIIDTDDP*EQNHLGRQVRRFQSDTWQK**ELIILQGNIANFSQNEEMRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTVEHVWKILR 468
            V+LFW PPSI SQWTPS F  D VE + A QF  ASKAR  GD   L  I+ + DP      GRQVR F    W+K    I+L G +  FS N  MR  L  TG+  L EA+  D   GIG+RA  P A+ P  W    LLG+ ++ V  +LR
Sbjct:   42 VILFWQPPSIFSQWTPSTFSVDGVEYSCAEQFFAASKARHFGDKDMLHNIMLSSDPAMHKLYGRQVRGFTQQAWEKVKAYIVLVGTLEKFSHNPAMRQYLLKTGNSILAEASPFDNTRGIGMRADHPEAANPSNWTGKNLLGKALQSVRDLLR 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11127.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I2I2Z7_9DELT6.170e-4147.02NADAR domain-containing protein n=2 Tax=Nannocysti... [more]
D7FYJ3_ECTSI3.150e-3845.03NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4R4SH62_9ACTN1.140e-3547.62NADAR family protein n=1 Tax=Actinomadura sp. GC30... [more]
A0A836CP42_9STRA3.650e-3342.76NADAR domain-containing protein n=1 Tax=Tribonema ... [more]
A0A1Q2CZD5_9ACTN3.330e-3243.21NADAR domain-containing protein n=1 Tax=Tessaracoc... [more]
A0A6H5L3B4_9PHAE5.230e-3243.67NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A371YUE5_9GAMM5.650e-3246.48NADAR family protein n=1 Tax=Acinetobacter sichuan... [more]
A0A6H5JIZ7_9PHAE9.400e-3242.41NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A0K1PK87_9DELT1.490e-3143.67GTP cyclohydrolase II n=1 Tax=Labilithrix luteola ... [more]
A0A6H5L1K5_9PHAE1.690e-3145.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11127contigH-elongata_contig11127:6923..7396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.8918054-CDS-H-elongata_contig11127:6922..71021622929636.8918054-CDS-H-elongata_contig11127:6922..7102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11127 6923..7102 -
1691679100.6119177-CDS-H-elongata_contig11127:6922..71021691679100.6119177-CDS-H-elongata_contig11127:6922..7102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11127 6923..7102 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.9055488-UTR-H-elongata_contig11127:7102..73961622929636.9055488-UTR-H-elongata_contig11127:7102..7396Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11127 7103..7396 -
1691679100.6191158-UTR-H-elongata_contig11127:7102..73961691679100.6191158-UTR-H-elongata_contig11127:7102..7396Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11127 7103..7396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11127.924.1prot_H-elongata_contig11127.924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11127 6923..7102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11127.924.1

>prot_H-elongata_contig11127.924.1 ID=prot_H-elongata_contig11127.924.1|Name=mRNA_H-elongata_contig11127.924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MRLVLAYTGDRRLVEANLHDKGWGIGLRASDPRASTPDTWYVHTLLGQTV
EHVWKILRQE
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mRNA from alignment at H-elongata_contig11127:6923..7396-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11127.924.1 ID=mRNA_H-elongata_contig11127.924.1|Name=mRNA_H-elongata_contig11127.924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig11127:6923..7396- (Himanthalia elongata Himel1 dioecious)
AGTGACGACGTCGTCCTCTTCTGGCATCCACCGTCGATCGTTTCCCAATG GACCCCATCACGGTTCGTTGGGGATCCCGTCGAATGTAATAGCGCCGCAC AGTTTATGATGGCCTCCAAAGCACGCCTTGTTGGTGACGACATGGCACTC TCCGCCATCATTGACACCGACGACCCTTGAGAGCAAAACCACCTCGGCCG TCAGGTGCGCCGCTTTCAAAGTGATACATGGCAGAAATAATGAGAACTTA TAATACTCCAAGGCAACATCGCAAACTTCTCTCAAAACGAAGAGATGCGA CTTGTCCTCGCCTATACCGGTGATCGCCGTCTCGTCGAAGCCAACCTGCA CGATAAAGGGTGGGGTATCGGCCTCCGCGCCAGCGACCCGCGCGCCTCTA CCCCTGATACATGGTATGTACACACCCTACTCGGTCAAACAGTAGAGCAC GTATGGAAAATCCTGCGCCAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig11127:6923..7396-

>mRNA_H-elongata_contig11127.924.1 ID=mRNA_H-elongata_contig11127.924.1|Name=mRNA_H-elongata_contig11127.924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig11127:6923..7396- (Himanthalia elongata Himel1 dioecious)
ATGCGACTTGTCCTCGCCTATACCGGTGATCGCCGTCTCGTCGAAGCCAA
CCTGCACGATAAAGGGTGGGGTATCGGCCTCCGCGCCAGCGACCCGCGCG
CCTCTACCCCTGATACATGGTATGTACACACCCTACTCGGTCAAACAGTA
GAGCACGTATGGAAAATCCTGCGCCAAGAGATGCGACTTGTCCTCGCCTA
TACCGGTGATCGCCGTCTCGTCGAAGCCAACCTGCACGATAAAGGGTGGG
GTATCGGCCTCCGCGCCAGCGACCCGCGCGCCTCTACCCCTGATACATGG
TATGTACACACCCTACTCGGTCAAACAGTAGAGCACGTATGGAAAATCCT
GCGCCAAGAG
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