mRNA_H-elongata_contig111250.922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111250.922.1
Unique NamemRNA_H-elongata_contig111250.922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-10
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
            QS+RM+LAIAAE+D+EV  LDV+T+FL A +EEDVFVKMA G+E  + +G
Sbjct:  352 QSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANG 401          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A2I0IVS1_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IVS1_PUNGR)

HSP 1 Score: 59.3 bits (142), Expect = 3.390e-9
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSGV 165
            +SIR+MLAIAA  DYEV  +D++TAFLN ++EED+F+    G+++ D+S V
Sbjct:   56 KSIRIMLAIAAHYDYEVWQMDIKTAFLNGLIEEDIFMDQPRGFDSKDKSKV 106          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: UPI0013732D3A (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI0013732D3A)

HSP 1 Score: 51.2 bits (121), Expect = 1.530e-6
Identity = 22/50 (44.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
            +SIR++L+IAA LDYE+  +DV+TAFLN  ++E ++++   G++   Q G
Sbjct:   56 KSIRILLSIAAALDYEIWQMDVKTAFLNGYLDESIYMEQPDGFKVTGQEG 105          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A1U8Q9U1_NELNU (uncharacterized protein LOC109115353 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q9U1_NELNU)

HSP 1 Score: 52.4 bits (124), Expect = 1.940e-6
Identity = 22/49 (44.90%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
            SIR++L++AA LD+E+H +DV  AFLN  ++E+V++K+  G+E  ++ G
Sbjct:  483 SIRVLLSMAANLDWELHQMDVSNAFLNGTLDEEVYMKLPPGFEDKEKPG 531          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A699JEX5_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JEX5_TANCI)

HSP 1 Score: 52.0 bits (123), Expect = 2.640e-6
Identity = 22/51 (43.14%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSGV 165
            ++IRM++AIAA+  +++H +DV++AFLN  +EE+V+V+   GY    Q G+
Sbjct:  201 ETIRMIIAIAAQYRWKIHQMDVKSAFLNGFLEEEVYVERPEGYVAKGQEGI 251          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6L2N4D9_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2N4D9_TANCI)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-6
Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
            ++IRM++AIAA+  +++H +DV++AFLN ++EE+V+V+   GY    Q G
Sbjct:  567 ETIRMIIAIAAQYRWKIHQMDVKSAFLNGLLEEEVYVEQPKGYVAKGQEG 616          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: Q9FY10_PICAB (Reverse transcriptase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q9FY10_PICAB)

HSP 1 Score: 49.3 bits (116), Expect = 4.150e-6
Identity = 19/45 (42.22%), Postives = 37/45 (82.22%), Query Frame = 1
Query:   16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETN 150
            SIR++++IA E+ +++H +DV+TAFLN ++EE+V+++   G+E +
Sbjct:   21 SIRVVISIAVEMGWKIHQMDVKTAFLNGLIEEEVYIEKPLGFEVH 65          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6S7GU81_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU81_PARCT)

HSP 1 Score: 51.2 bits (121), Expect = 5.000e-6
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGY 141
            SIR +LAIA +LD EVH +DV TAFLN  +EE++++K   GY
Sbjct:  904 SIRSLLAIAKQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGY 945          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: Q9FY11_PICAB (Reverse transcriptase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q9FY11_PICAB)

HSP 1 Score: 48.9 bits (115), Expect = 5.750e-6
Identity = 19/45 (42.22%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETN 150
            SIR +++IA E+ +++H +DV+TAFLN ++EE+V+++   G+E +
Sbjct:   21 SIRAVISIAVEMGWKIHQMDVKTAFLNGLIEEEVYIEQPLGFEVH 65          
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6S7J2R1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J2R1_PARCT)

HSP 1 Score: 50.8 bits (120), Expect = 5.970e-6
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGY 141
            SIR +LAIA +LD EVH +DV TAFLN  +EE++++K   GY
Sbjct:   81 SIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGY 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT9_9PHAE1.190e-1064.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2I0IVS1_PUNGR3.390e-952.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0013732D3A1.530e-644.00hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
A0A1U8Q9U1_NELNU1.940e-644.90uncharacterized protein LOC109115353 n=1 Tax=Nelum... [more]
A0A699JEX5_TANCI2.640e-643.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2N4D9_TANCI2.670e-644.00Retrovirus-related Pol polyprotein from transposon... [more]
Q9FY10_PICAB4.150e-642.22Reverse transcriptase (Fragment) n=1 Tax=Picea abi... [more]
A0A6S7GU81_PARCT5.000e-657.14Retrovirus-related Pol poly from transposon TNT 1-... [more]
Q9FY11_PICAB5.750e-642.22Reverse transcriptase (Fragment) n=1 Tax=Picea abi... [more]
A0A6S7J2R1_PARCT5.970e-657.14Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111250contigH-elongata_contig111250:1993..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size141
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.7215834-UTR-H-elongata_contig111250:1992..20161622929636.7215834-UTR-H-elongata_contig111250:1992..2016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111250 1993..2016 +
1691679100.5712287-UTR-H-elongata_contig111250:1992..20161691679100.5712287-UTR-H-elongata_contig111250:1992..2016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111250 1993..2016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.7341962-CDS-H-elongata_contig111250:2016..21571622929636.7341962-CDS-H-elongata_contig111250:2016..2157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111250 2017..2157 +
1691679100.5783658-CDS-H-elongata_contig111250:2016..21571691679100.5783658-CDS-H-elongata_contig111250:2016..2157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111250 2017..2157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111250.922.1prot_H-elongata_contig111250.922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111250 2017..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111250.922.1

>prot_H-elongata_contig111250.922.1 ID=prot_H-elongata_contig111250.922.1|Name=mRNA_H-elongata_contig111250.922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSGV
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mRNA from alignment at H-elongata_contig111250:1993..2157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111250.922.1 ID=mRNA_H-elongata_contig111250.922.1|Name=mRNA_H-elongata_contig111250.922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig111250:1993..2157+ (Himanthalia elongata Himel1 dioecious)
GAACTTTTCCAGCAGAGCATTCGCATGATGCTCGCAATCGCGGCGGAGCT GGACTACGAGGTGCACATGCTGGATGTGCAGACGGCATTCCTCAACGCCA TCGTCGAAGAGGACGTGTTCGTCAAGATGGCGTCCGGCTACGAGACCAAC GACCAGTCAGGAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig111250:1993..2157+

>mRNA_H-elongata_contig111250.922.1 ID=mRNA_H-elongata_contig111250.922.1|Name=mRNA_H-elongata_contig111250.922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig111250:1993..2157+ (Himanthalia elongata Himel1 dioecious)
ATGATGCTCGCAATCGCGGCGGAGCTGGACTACGAGGTGCACATGCTGGA
TGTGCAGACGGCATTCCTCAACGCCATCGTCGAAGAGGACGTGTTCGTCA
AGATGGCGTCCGGCTACGAGACCAACGACCAGTCAGGAGTTATGATGCTC
GCAATCGCGGCGGAGCTGGACTACGAGGTGCACATGCTGGATGTGCAGAC
GGCATTCCTCAACGCCATCGTCGAAGAGGACGTGTTCGTCAAGATGGCGT
CCGGCTACGAGACCAACGACCAGTCAGGAGTT
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