mRNA_H-elongata_contig111250.922.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.190e-10 Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query: 13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
QS+RM+LAIAAE+D+EV LDV+T+FL A +EEDVFVKMA G+E + +G
Sbjct: 352 QSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANG 401
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A2I0IVS1_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IVS1_PUNGR) HSP 1 Score: 59.3 bits (142), Expect = 3.390e-9 Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSGV 165
+SIR+MLAIAA DYEV +D++TAFLN ++EED+F+ G+++ D+S V
Sbjct: 56 KSIRIMLAIAAHYDYEVWQMDIKTAFLNGLIEEDIFMDQPRGFDSKDKSKV 106
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: UPI0013732D3A (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI0013732D3A) HSP 1 Score: 51.2 bits (121), Expect = 1.530e-6 Identity = 22/50 (44.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
+SIR++L+IAA LDYE+ +DV+TAFLN ++E ++++ G++ Q G
Sbjct: 56 KSIRILLSIAAALDYEIWQMDVKTAFLNGYLDESIYMEQPDGFKVTGQEG 105
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A1U8Q9U1_NELNU (uncharacterized protein LOC109115353 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q9U1_NELNU) HSP 1 Score: 52.4 bits (124), Expect = 1.940e-6 Identity = 22/49 (44.90%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
SIR++L++AA LD+E+H +DV AFLN ++E+V++K+ G+E ++ G
Sbjct: 483 SIRVLLSMAANLDWELHQMDVSNAFLNGTLDEEVYMKLPPGFEDKEKPG 531
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A699JEX5_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JEX5_TANCI) HSP 1 Score: 52.0 bits (123), Expect = 2.640e-6 Identity = 22/51 (43.14%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSGV 165
++IRM++AIAA+ +++H +DV++AFLN +EE+V+V+ GY Q G+
Sbjct: 201 ETIRMIIAIAAQYRWKIHQMDVKSAFLNGFLEEEVYVERPEGYVAKGQEGI 251
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6L2N4D9_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2N4D9_TANCI) HSP 1 Score: 52.0 bits (123), Expect = 2.670e-6 Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 13 QSIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSG 162
++IRM++AIAA+ +++H +DV++AFLN ++EE+V+V+ GY Q G
Sbjct: 567 ETIRMIIAIAAQYRWKIHQMDVKSAFLNGLLEEEVYVEQPKGYVAKGQEG 616
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: Q9FY10_PICAB (Reverse transcriptase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q9FY10_PICAB) HSP 1 Score: 49.3 bits (116), Expect = 4.150e-6 Identity = 19/45 (42.22%), Postives = 37/45 (82.22%), Query Frame = 1
Query: 16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETN 150
SIR++++IA E+ +++H +DV+TAFLN ++EE+V+++ G+E +
Sbjct: 21 SIRVVISIAVEMGWKIHQMDVKTAFLNGLIEEEVYIEKPLGFEVH 65
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6S7GU81_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU81_PARCT) HSP 1 Score: 51.2 bits (121), Expect = 5.000e-6 Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGY 141
SIR +LAIA +LD EVH +DV TAFLN +EE++++K GY
Sbjct: 904 SIRSLLAIAKQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGY 945
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: Q9FY11_PICAB (Reverse transcriptase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q9FY11_PICAB) HSP 1 Score: 48.9 bits (115), Expect = 5.750e-6 Identity = 19/45 (42.22%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETN 150
SIR +++IA E+ +++H +DV+TAFLN ++EE+V+++ G+E +
Sbjct: 21 SIRAVISIAVEMGWKIHQMDVKTAFLNGLIEEEVYIEQPLGFEVH 65
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Match: A0A6S7J2R1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J2R1_PARCT) HSP 1 Score: 50.8 bits (120), Expect = 5.970e-6 Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 16 SIRMMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGY 141
SIR +LAIA +LD EVH +DV TAFLN +EE++++K GY
Sbjct: 81 SIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGY 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111250.922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111250.922.1 >prot_H-elongata_contig111250.922.1 ID=prot_H-elongata_contig111250.922.1|Name=mRNA_H-elongata_contig111250.922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp MMLAIAAELDYEVHMLDVQTAFLNAIVEEDVFVKMASGYETNDQSGVback to top mRNA from alignment at H-elongata_contig111250:1993..2157+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111250.922.1 ID=mRNA_H-elongata_contig111250.922.1|Name=mRNA_H-elongata_contig111250.922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig111250:1993..2157+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111250:1993..2157+ >mRNA_H-elongata_contig111250.922.1 ID=mRNA_H-elongata_contig111250.922.1|Name=mRNA_H-elongata_contig111250.922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig111250:1993..2157+ (Himanthalia elongata Himel1 dioecious)back to top |