mRNA_H-elongata_contig111007.905.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A8F0FAP0_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP0_9PHAE) HSP 1 Score: 354 bits (909), Expect = 7.500e-123 Identity = 174/184 (94.57%), Postives = 179/184 (97.28%), Query Frame = 1
Query: 106 MHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
M NLKKSL+IFFVTLSLPLIAFADVAGLTKCS+S AFNKRLESSVKKLELRVQKYE GSPPALALEQQI RTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYL+TVSNTS PTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSG+FLA+DSEITVSPR
Sbjct: 1 MRNLKKSLLIFFVTLSLPLIAFADVAGLTKCSESAAFNKRLESSVKKLELRVQKYEAGSPPALALEQQISRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLNTVSNTSNPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGNFLASDSEITVSPR 184
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: D1J7A8_ECTSI (Photosystem I reaction center subunit III n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7A8_ECTSI) HSP 1 Score: 346 bits (887), Expect = 5.400e-119 Identity = 176/219 (80.37%), Postives = 192/219 (87.67%), Query Frame = 1
Query: 1 YTIIYDYFYIRENLLPNIKNLFFIKTLNLSLSL*LMHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
YT +Y YFYI L +++NLFFIK + S +M +KKSL+IFF+TLSLPL +FADVAGLTKCS+SVAFNKRLE SVKKLE RVQKYE SPPALALEQQI RTKQRF+RYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYI+GWIGWVGR YL+TVSNT+ PTEKEIIIDVPLALKIMS+GFIWP SAWQEFTSG FLA DSEITVSPR
Sbjct: 3 YTTMYTYFYI----LCSVENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVAFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 217
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A1I9LVT8_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT8_9PHAE) HSP 1 Score: 336 bits (861), Expect = 5.100e-115 Identity = 171/220 (77.73%), Postives = 188/220 (85.45%), Query Frame = 1
Query: 1 YTIIYDYFYIRENLLPNIKNLFFIKTLNLSLSL*LMHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTS-KPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
YT +Y YFYI L N++NLFFIK N S+ L +M KKSL+IFF+TLSLP I+FADVAGLTKCSDS FNKRLESSVKKLE R++KYE SPPAL L++QI TK+RFDRYSNSELLCGK+GLPHLITDGRWDHAVEFMIPG+MFLYISGWIGWVGR YL+TVS TS PTEKEIIIDVPLALKIMS+GFIWP SAWQEFTSG FL DSEITVSPR
Sbjct: 3 YTNMYTYFYI----LCNVENLFFIKIYNFSMFLAIMFKFKKSLLIFFLTLSLPFISFADVAGLTKCSDSSPFNKRLESSVKKLETRIKKYEPNSPPALVLQEQIRTTKKRFDRYSNSELLCGKDGLPHLITDGRWDHAVEFMIPGIMFLYISGWIGWVGRSYLNTVSKTSLNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLTPDSEITVSPR 218
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A0S0GAQ3_COSCS (Photosystem I reaction center subunit III n=29 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAQ3_COSCS) HSP 1 Score: 330 bits (847), Expect = 3.950e-113 Identity = 162/201 (80.60%), Postives = 178/201 (88.56%), Query Frame = 1
Query: 55 KNLFFIKTLNLSLSL*LMHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
KNLFFIKT + SL LM N KKS++IFF+ LS+PL AFADVAGLTKCS+S FNKR ++SVKKLE+RV+KYE GSPPALALEQQI RTKQRF RYSNSELLCGKEGLPHLITDGRWDHAVEF+IPGMMFLYISGWIGW GR YL+TV TS PTEKEII+DVPLALKIMS+GFIWP SAWQEFT+G+FL DSEITVSPR
Sbjct: 2 KNLFFIKTHSFSLLFRLMFNFKKSVLIFFLALSIPLAAFADVAGLTKCSESAPFNKRFDASVKKLEVRVKKYEPGSPPALALEQQITRTKQRFTRYSNSELLCGKEGLPHLITDGRWDHAVEFVIPGMMFLYISGWIGWAGRSYLNTVGATSNPTEKEIILDVPLALKIMSSGFIWPVSAWQEFTTGNFLVPDSEITVSPR 202
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A8F0JXW8_9PHAE (Photosystem I reaction center subunit III n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JXW8_9PHAE) HSP 1 Score: 325 bits (833), Expect = 2.860e-111 Identity = 156/184 (84.78%), Postives = 168/184 (91.30%), Query Frame = 1
Query: 106 MHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
M NLKKS +IFF+ LS+PL AFADVAGLTKCS+S FNKRLE+SVKKLE RVQKYE GSPPALALEQQI RTKQRFDRYS SELLCGKEGLPHLITDGRWDH+VEF+IPG+MFLYISGWIGWVGR YL+TVS TS PTEKEIIIDVPLALKIMS+GF+WP SAWQEFT G+FLA DSEITVSPR
Sbjct: 1 MFNLKKSFLIFFLALSIPLTAFADVAGLTKCSESAPFNKRLEASVKKLESRVQKYEVGSPPALALEQQINRTKQRFDRYSKSELLCGKEGLPHLITDGRWDHSVEFVIPGLMFLYISGWIGWVGRSYLNTVSKTSNPTEKEIIIDVPLALKIMSSGFVWPVSAWQEFTGGNFLAPDSEITVSPR 184
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A6B7ILH5_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7ILH5_9PHAE) HSP 1 Score: 320 bits (820), Expect = 2.730e-109 Identity = 152/184 (82.61%), Postives = 167/184 (90.76%), Query Frame = 1
Query: 106 MHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
M KKSL+IF + SLPL+ FADVAGLTKCS+S FNKRL++SVKKLE R+QKYE GSPPALALEQQI RTKQRFDRYSNSELLCGK+GLPHLITDGRWDHAVEFMIPGMMFLYI+GWIGWVGR YL+T+S +S PTEKEIIIDVPLALKIMS+GFIWP SAWQEFTSG+FLA DS+ITVSPR
Sbjct: 1 MFKFKKSLLIFVLVFSLPLVTFADVAGLTKCSESTTFNKRLDASVKKLEGRIQKYEAGSPPALALEQQINRTKQRFDRYSNSELLCGKDGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRNYLNTISGSSNPTEKEIIIDVPLALKIMSSGFIWPVSAWQEFTSGNFLAPDSDITVSPR 184
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A141BSG7_9PHAE (Photosystem I reaction center subunit III n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG7_9PHAE) HSP 1 Score: 316 bits (809), Expect = 1.390e-107 Identity = 149/182 (81.87%), Postives = 168/182 (92.31%), Query Frame = 1
Query: 112 NLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
+LKKSL+I F+TLSLPL FADVAGLTKCS+S AFN RLESSV+KLE R++KYETGSPPALALEQQI RTKQRF+RYSNSELLCGK+GLPHLITDGRWDHAVEF+IPG+MF+YISGWIGWVGR Y++ +S TS PTEKEIIIDVPLA+KIMS+GF+WP SAWQEF SG FLA+DSEITVSPR
Sbjct: 5 SLKKSLLIVFLTLSLPLTVFADVAGLTKCSESSAFNNRLESSVRKLESRIKKYETGSPPALALEQQINRTKQRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFIIPGIMFIYISGWIGWVGRSYINNISTTSNPTEKEIIIDVPLAIKIMSSGFVWPISAWQEFASGSFLASDSEITVSPR 186
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A344PFC1_9PHAE (Photosystem I reaction center subunit III n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFC1_9PHAE) HSP 1 Score: 315 bits (807), Expect = 2.700e-107 Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = 1
Query: 103 LMHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
+M KKSL+IFF+ LSLPL +FADVAGLTKCSDS AF KRL+SSVKKLE R++KYE SPPALALEQQI RTKQRFDRYSNS+LLCGK+GLPHLITDGRW+HAVEF+IPGMMFLYISGWIGWVGR YL+TVS S PTEKEIIIDVPLALKIMS+GFIWP SAWQEFTSG FLA DSEITVSPR
Sbjct: 1 MMFKFKKSLLIFFLALSLPLASFADVAGLTKCSDSSAFTKRLDSSVKKLEGRIKKYEPNSPPALALEQQINRTKQRFDRYSNSQLLCGKDGLPHLITDGRWNHAVEFVIPGMMFLYISGWIGWVGRSYLNTVSVFSNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 185
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A2R4QPX5_9PHAE (Photosystem I reaction center subunit III n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPX5_9PHAE) HSP 1 Score: 310 bits (795), Expect = 1.880e-105 Identity = 147/182 (80.77%), Postives = 163/182 (89.56%), Query Frame = 1
Query: 112 NLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
+LKK L++ +T SLP FAD+AGLTKCSDS FN RL+SSVKKLE RV+KYE GSPPALALEQQI RTKQRF+RYSNSELLCGK+GLPHLITDGRWDHAVEF+IPG+MF+YISGWIGWVGR Y++ VSNT PTEKEIIIDVPLALKIMS+GFIWP SAWQEFTSG FLA+DSEITVSPR
Sbjct: 5 HLKKLLLVILITFSLPSTIFADIAGLTKCSDSSTFNNRLDSSVKKLESRVKKYEAGSPPALALEQQISRTKQRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFVIPGLMFIYISGWIGWVGRSYINNVSNTKNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGSFLASDSEITVSPR 186
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Match: A0A8F0F743_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F743_9PHAE) HSP 1 Score: 310 bits (794), Expect = 2.960e-105 Identity = 145/185 (78.38%), Postives = 166/185 (89.73%), Query Frame = 1
Query: 103 LMHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELRVQKYETGSPPALALEQQIGRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLSTVSNTSKPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGDFLAADSEITVSPR 657
LM L+KSL+ FF+ +LPL A+ADVAGLTKCSDS AFNKR + SVKKLE R+QKYE GSPP LALEQQI RTK RF+RYSNSELLCGK+GLPHLITDGRWDHAVEF+IPG+MF+YISGWIGWVGRKY++T+ + PTEKEIIIDVPLA+KIMS+GFIWP SAWQEFT+G+FLA+DSEITVSPR
Sbjct: 5 LMFTLRKSLLFFFLAFTLPLNAYADVAGLTKCSDSAAFNKRFDGSVKKLETRIQKYEPGSPPTLALEQQIERTKNRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFIIPGIMFIYISGWIGWVGRKYINTIGTSKNPTEKEIIIDVPLAVKIMSSGFIWPISAWQEFTTGNFLASDSEITVSPR 189 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111007.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111007.905.1 >prot_H-elongata_contig111007.905.1 ID=prot_H-elongata_contig111007.905.1|Name=mRNA_H-elongata_contig111007.905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp MHNLKKSLVIFFVTLSLPLIAFADVAGLTKCSDSVAFNKRLESSVKKLELback to top mRNA from alignment at H-elongata_contig111007:1425..2084+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111007.905.1 ID=mRNA_H-elongata_contig111007.905.1|Name=mRNA_H-elongata_contig111007.905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig111007:1425..2084+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111007:1425..2084+ >mRNA_H-elongata_contig111007.905.1 ID=mRNA_H-elongata_contig111007.905.1|Name=mRNA_H-elongata_contig111007.905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig111007:1425..2084+ (Himanthalia elongata Himel1 dioecious)back to top |