mRNA_H-elongata_contig110909.897.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A6H5KNR9_9PHAE (GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNR9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 2.670e-49 Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
LRLPQMV NNEDPKMTAF +TVDAK GTSTGISAGDRA TL ALAD +A DF+RPGH+FPLRYT GGVL+R GHTEAAVDL+ LAGL+PVGVLCEITT DGK+MAR
Sbjct: 492 LRLPQMVENNEDPKMTAFAITVDAKFGTSTGISAGDRATTLRALADPEAGPQDFNRPGHIFPLRYTPGGVLERGGHTEAAVDLATLAGLSPVGVLCEITTKDGKDMAR 599
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A835ZPV4_9STRA (GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPV4_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.280e-42 Identity = 78/108 (72.22%), Postives = 90/108 (83.33%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L++P MV NEDPK TAF VTVDAK GT+TGISA DR+ TL LA+ ATA DF+RPGH+FPLRY GGVLKR GHTEAA+DL++LAGL PVGVLCEITT DG++MAR
Sbjct: 351 LQIPPMVAVNEDPKATAFAVTVDAKHGTTTGISAKDRSNTLMTLANPDATAADFNRPGHIFPLRYCKGGVLKRGGHTEAALDLARLAGLPPVGVLCEITTADGRDMAR 458
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7J7IL11_9RHOD (GTP cyclohydrolase II n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IL11_9RHOD) HSP 1 Score: 150 bits (380), Expect = 3.000e-42 Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
LRL QMVP+NEDP+ T+FTV+VD K GTSTGISA DR+ T+ ALAD K+TA DF RPGH+FPLRY GGVLKRAGHTEA++DL ++AGLAPVGVLCE+ +MAR
Sbjct: 193 LRLFQMVPDNEDPRRTSFTVSVDLKHGTSTGISAADRSATIRALADPKSTAADFRRPGHIFPLRYAKGGVLKRAGHTEASLDLCRIAGLAPVGVLCEVVNDIDGSMAR 300
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A8J6CIC4_DIALT (GTP cyclohydrolase II n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIC4_DIALT) HSP 1 Score: 152 bits (384), Expect = 2.140e-41 Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L+LPQMV NEDPKMTAFTV+VDA+ GT+TGISA DRA TL LA + +TADDF RPGH+FPLR GVL R GHTEAAVDL +LAGLAP GVLCEI + DG++MAR
Sbjct: 142 LQLPQMVSTNEDPKMTAFTVSVDARTGTTTGISAADRAETLRQLARASSTADDFQRPGHIFPLRARKHGVLARQGHTEAAVDLCRLAGLAPAGVLCEIVSADGQSMAR 249
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: M1VFL2_CYAM1 (GTP cyclohydrolase II n=2 Tax=cellular organisms TaxID=131567 RepID=M1VFL2_CYAM1) HSP 1 Score: 151 bits (381), Expect = 5.190e-41 Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
LRL QMVP+NEDPK T+FTV+VD K G +TGISA DR+ T+ ALA+ ++TADDF RPGH+FPLRY GGVLKRAGHTEA++DL +LAGLAPVGVLCEI +MAR
Sbjct: 196 LRLFQMVPDNEDPKRTSFTVSVDLKHGVTTGISAADRSATIRALANPRSTADDFRRPGHIFPLRYAKGGVLKRAGHTEASLDLCRLAGLAPVGVLCEIVNDSDGSMAR 303
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7S3XWG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWG0_HETAK) HSP 1 Score: 139 bits (351), Expect = 6.290e-40 Identity = 77/109 (70.64%), Postives = 80/109 (73.39%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAK-VGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L LP MV N+DPK TAF VTVDAK G STGISAGDRA T ALA D SRPGHVFPLR GGVL+RAGHTEAAVDL +LAGL P GVLCEITT DG MAR
Sbjct: 34 LALPPMVAENQDPKGTAFAVTVDAKGPGISTGISAGDRAATFRALAAPATRPADLSRPGHVFPLRARPGGVLRRAGHTEAAVDLCRLAGLRPAGVLCEITTADGLGMAR 142
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7S1TFV8_9RHOD (GTP cyclohydrolase II n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFV8_9RHOD) HSP 1 Score: 146 bits (369), Expect = 7.090e-40 Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L+L MVP NEDPK TAFTVT D + GT+TGISA DR++T+ ALAD + A+DF RPGH+FPLRY GGVLKRAGHTEAAVD ++AGL PVGVLCEI DG +MAR
Sbjct: 84 LKLQAMVPQNEDPKGTAFTVTCDYRFGTTTGISAKDRSLTIRALADETSAAEDFHRPGHIFPLRYREGGVLKRAGHTEAAVDFCRIAGLRPVGVLCEIVNDDG-SMAR 190
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A2V3IZJ0_9FLOR (GTP cyclohydrolase II n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZJ0_9FLOR) HSP 1 Score: 145 bits (365), Expect = 2.900e-39 Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L+L QMV NN DPK TAFT+T D K+GTSTGISA DRA+TL ALAD + DDF RPGH+FPLRY GGVLKRAGHTEA+VD ++LAG APVGVL E+ + +MAR
Sbjct: 134 LQLQQMVHNNTDPKNTAFTITCDLKLGTSTGISAADRAMTLRALADPNSHPDDFHRPGHIFPLRYRQGGVLKRAGHTEASVDFARLAGCAPVGVLSEVVNDNDGSMAR 241
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7S0T809_9RHOD (GTP cyclohydrolase II n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T809_9RHOD) HSP 1 Score: 146 bits (369), Expect = 2.920e-39 Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L+L QMVP NEDPK TAFTV+VD K TSTGISA DRA T+ ALAD + A DFSRPGH+FPLRY GGVLKRAGHTEAAVD ++LAGLAPVG+L EI +MAR
Sbjct: 171 LKLHQMVPENEDPKQTAFTVSVDYKHETSTGISAADRARTIRALADPMSVASDFSRPGHLFPLRYRQGGVLKRAGHTEAAVDFARLAGLAPVGILAEIVNDKDGSMAR 278
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A1W9JD78_9PROT (3,4-dihydroxy-2-butanone 4-phosphate synthase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1W9JD78_9PROT) HSP 1 Score: 139 bits (349), Expect = 6.610e-39 Identity = 75/108 (69.44%), Postives = 83/108 (76.85%), Query Frame = 1
Query: 1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
L+LP MV NN + TAFTV+VD K GT+TGISA DRAITL ALADS A A DF RPGH+FPLR GGVL+R GHTEAA DL+ LAGL PVGVLCEI DG +MAR
Sbjct: 73 LQLPLMVENNTESHRTAFTVSVDYKFGTTTGISAADRAITLRALADSSAQASDFLRPGHIFPLRARLGGVLERPGHTEAAYDLAALAGLNPVGVLCEIVNEDG-SMAR 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110909.897.1 >prot_H-elongata_contig110909.897.1 ID=prot_H-elongata_contig110909.897.1|Name=mRNA_H-elongata_contig110909.897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp MVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSback to top mRNA from alignment at H-elongata_contig110909:1170..2013- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110909.897.1 ID=mRNA_H-elongata_contig110909.897.1|Name=mRNA_H-elongata_contig110909.897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at H-elongata_contig110909:1170..2013- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110909:1170..2013- >mRNA_H-elongata_contig110909.897.1 ID=mRNA_H-elongata_contig110909.897.1|Name=mRNA_H-elongata_contig110909.897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig110909:1170..2013- (Himanthalia elongata Himel1 dioecious)back to top |