mRNA_H-elongata_contig110909.897.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110909.897.1
Unique NamemRNA_H-elongata_contig110909.897.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A6H5KNR9_9PHAE (GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNR9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.670e-49
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            LRLPQMV NNEDPKMTAF +TVDAK GTSTGISAGDRA TL ALAD +A   DF+RPGH+FPLRYT GGVL+R GHTEAAVDL+ LAGL+PVGVLCEITT DGK+MAR
Sbjct:  492 LRLPQMVENNEDPKMTAFAITVDAKFGTSTGISAGDRATTLRALADPEAGPQDFNRPGHIFPLRYTPGGVLERGGHTEAAVDLATLAGLSPVGVLCEITTKDGKDMAR 599          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A835ZPV4_9STRA (GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPV4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.280e-42
Identity = 78/108 (72.22%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L++P MV  NEDPK TAF VTVDAK GT+TGISA DR+ TL  LA+  ATA DF+RPGH+FPLRY  GGVLKR GHTEAA+DL++LAGL PVGVLCEITT DG++MAR
Sbjct:  351 LQIPPMVAVNEDPKATAFAVTVDAKHGTTTGISAKDRSNTLMTLANPDATAADFNRPGHIFPLRYCKGGVLKRGGHTEAALDLARLAGLPPVGVLCEITTADGRDMAR 458          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7J7IL11_9RHOD (GTP cyclohydrolase II n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IL11_9RHOD)

HSP 1 Score: 150 bits (380), Expect = 3.000e-42
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            LRL QMVP+NEDP+ T+FTV+VD K GTSTGISA DR+ T+ ALAD K+TA DF RPGH+FPLRY  GGVLKRAGHTEA++DL ++AGLAPVGVLCE+      +MAR
Sbjct:  193 LRLFQMVPDNEDPRRTSFTVSVDLKHGTSTGISAADRSATIRALADPKSTAADFRRPGHIFPLRYAKGGVLKRAGHTEASLDLCRIAGLAPVGVLCEVVNDIDGSMAR 300          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A8J6CIC4_DIALT (GTP cyclohydrolase II n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIC4_DIALT)

HSP 1 Score: 152 bits (384), Expect = 2.140e-41
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L+LPQMV  NEDPKMTAFTV+VDA+ GT+TGISA DRA TL  LA + +TADDF RPGH+FPLR    GVL R GHTEAAVDL +LAGLAP GVLCEI + DG++MAR
Sbjct:  142 LQLPQMVSTNEDPKMTAFTVSVDARTGTTTGISAADRAETLRQLARASSTADDFQRPGHIFPLRARKHGVLARQGHTEAAVDLCRLAGLAPAGVLCEIVSADGQSMAR 249          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: M1VFL2_CYAM1 (GTP cyclohydrolase II n=2 Tax=cellular organisms TaxID=131567 RepID=M1VFL2_CYAM1)

HSP 1 Score: 151 bits (381), Expect = 5.190e-41
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            LRL QMVP+NEDPK T+FTV+VD K G +TGISA DR+ T+ ALA+ ++TADDF RPGH+FPLRY  GGVLKRAGHTEA++DL +LAGLAPVGVLCEI      +MAR
Sbjct:  196 LRLFQMVPDNEDPKRTSFTVSVDLKHGVTTGISAADRSATIRALANPRSTADDFRRPGHIFPLRYAKGGVLKRAGHTEASLDLCRLAGLAPVGVLCEIVNDSDGSMAR 303          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7S3XWG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWG0_HETAK)

HSP 1 Score: 139 bits (351), Expect = 6.290e-40
Identity = 77/109 (70.64%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAK-VGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L LP MV  N+DPK TAF VTVDAK  G STGISAGDRA T  ALA       D SRPGHVFPLR   GGVL+RAGHTEAAVDL +LAGL P GVLCEITT DG  MAR
Sbjct:   34 LALPPMVAENQDPKGTAFAVTVDAKGPGISTGISAGDRAATFRALAAPATRPADLSRPGHVFPLRARPGGVLRRAGHTEAAVDLCRLAGLRPAGVLCEITTADGLGMAR 142          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7S1TFV8_9RHOD (GTP cyclohydrolase II n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFV8_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 7.090e-40
Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L+L  MVP NEDPK TAFTVT D + GT+TGISA DR++T+ ALAD  + A+DF RPGH+FPLRY  GGVLKRAGHTEAAVD  ++AGL PVGVLCEI   DG +MAR
Sbjct:   84 LKLQAMVPQNEDPKGTAFTVTCDYRFGTTTGISAKDRSLTIRALADETSAAEDFHRPGHIFPLRYREGGVLKRAGHTEAAVDFCRIAGLRPVGVLCEIVNDDG-SMAR 190          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A2V3IZJ0_9FLOR (GTP cyclohydrolase II n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZJ0_9FLOR)

HSP 1 Score: 145 bits (365), Expect = 2.900e-39
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L+L QMV NN DPK TAFT+T D K+GTSTGISA DRA+TL ALAD  +  DDF RPGH+FPLRY  GGVLKRAGHTEA+VD ++LAG APVGVL E+   +  +MAR
Sbjct:  134 LQLQQMVHNNTDPKNTAFTITCDLKLGTSTGISAADRAMTLRALADPNSHPDDFHRPGHIFPLRYRQGGVLKRAGHTEASVDFARLAGCAPVGVLSEVVNDNDGSMAR 241          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A7S0T809_9RHOD (GTP cyclohydrolase II n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T809_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 2.920e-39
Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L+L QMVP NEDPK TAFTV+VD K  TSTGISA DRA T+ ALAD  + A DFSRPGH+FPLRY  GGVLKRAGHTEAAVD ++LAGLAPVG+L EI      +MAR
Sbjct:  171 LKLHQMVPENEDPKQTAFTVSVDYKHETSTGISAADRARTIRALADPMSVASDFSRPGHLFPLRYRQGGVLKRAGHTEAAVDFARLAGLAPVGILAEIVNDKDGSMAR 278          
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Match: A0A1W9JD78_9PROT (3,4-dihydroxy-2-butanone 4-phosphate synthase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1W9JD78_9PROT)

HSP 1 Score: 139 bits (349), Expect = 6.610e-39
Identity = 75/108 (69.44%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 LRLPQMVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFSRPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKNMAR 324
            L+LP MV NN +   TAFTV+VD K GT+TGISA DRAITL ALADS A A DF RPGH+FPLR   GGVL+R GHTEAA DL+ LAGL PVGVLCEI   DG +MAR
Sbjct:   73 LQLPLMVENNTESHRTAFTVSVDYKFGTTTGISAADRAITLRALADSSAQASDFLRPGHIFPLRARLGGVLERPGHTEAAYDLAALAGLNPVGVLCEIVNEDG-SMAR 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110909.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNR9_9PHAE2.670e-4980.56GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZPV4_9STRA2.280e-4272.22GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxI... [more]
A0A7J7IL11_9RHOD3.000e-4269.44GTP cyclohydrolase II n=1 Tax=Cyanidiococcus yangm... [more]
A0A8J6CIC4_DIALT2.140e-4171.30GTP cyclohydrolase II n=1 Tax=Diacronema lutheri T... [more]
M1VFL2_CYAM15.190e-4169.44GTP cyclohydrolase II n=2 Tax=cellular organisms T... [more]
A0A7S3XWG0_HETAK6.290e-4070.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TFV8_9RHOD7.090e-4068.52GTP cyclohydrolase II n=1 Tax=Compsopogon caeruleu... [more]
A0A2V3IZJ0_9FLOR2.900e-3967.59GTP cyclohydrolase II n=1 Tax=Gracilariopsis chord... [more]
A0A7S0T809_9RHOD2.920e-3970.37GTP cyclohydrolase II n=1 Tax=Erythrolobus madagas... [more]
A0A1W9JD78_9PROT6.610e-3969.443,4-dihydroxy-2-butanone 4-phosphate synthase n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110909contigH-elongata_contig110909:1170..2013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue5.5e-39
Seed eggNOG ortholog2880.D8LBG6
Preferred nameRIB3
KEGG rclassRC00293,RC01792,RC01815,RC02504
KEGG koko:K02858,ko:K14652
KEGG ReactionR00425,R07281
KEGG Pathwayko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110
KEGG ModuleM00125,M00840
GOsGO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009060,GO:0009110,GO:0009231,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0015980,GO:0016020,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0031012,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0055114,GO:0062039,GO:0062040,GO:0070013,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
EC3.5.4.25,4.1.99.12
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110909.897.1prot_H-elongata_contig110909.897.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110909 1170..1998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.8348844-CDS-H-elongata_contig110909:1169..12981622929634.8348844-CDS-H-elongata_contig110909:1169..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110909 1170..1298 -
1691679100.0317953-CDS-H-elongata_contig110909:1169..12981691679100.0317953-CDS-H-elongata_contig110909:1169..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110909 1170..1298 -
1622929634.8530984-CDS-H-elongata_contig110909:1569..16231622929634.8530984-CDS-H-elongata_contig110909:1569..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110909 1570..1623 -
1691679100.0450056-CDS-H-elongata_contig110909:1569..16231691679100.0450056-CDS-H-elongata_contig110909:1569..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110909 1570..1623 -
1622929634.8690555-CDS-H-elongata_contig110909:1869..19981622929634.8690555-CDS-H-elongata_contig110909:1869..1998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110909 1870..1998 -
1691679100.0564554-CDS-H-elongata_contig110909:1869..19981691679100.0564554-CDS-H-elongata_contig110909:1869..1998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110909 1870..1998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.8839033-UTR-H-elongata_contig110909:1998..20131622929634.8839033-UTR-H-elongata_contig110909:1998..2013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110909 1999..2013 -
1691679100.0666513-UTR-H-elongata_contig110909:1998..20131691679100.0666513-UTR-H-elongata_contig110909:1998..2013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110909 1999..2013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110909.897.1

>prot_H-elongata_contig110909.897.1 ID=prot_H-elongata_contig110909.897.1|Name=mRNA_H-elongata_contig110909.897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MVPNNEDPKMTAFTVTVDAKVGTSTGISAGDRAITLHALADSKATADDFS
RPGHVFPLRYTAGGVLKRAGHTEAAVDLSKLAGLAPVGVLCEITTPDGKN
MAR*
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mRNA from alignment at H-elongata_contig110909:1170..2013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110909.897.1 ID=mRNA_H-elongata_contig110909.897.1|Name=mRNA_H-elongata_contig110909.897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at H-elongata_contig110909:1170..2013- (Himanthalia elongata Himel1 dioecious)
TTAAGATTGCCGCAGATGGTGCCGAATAATGAGGATCCGAAGATGACTGC CTTCACGGTCACCGTTGATGCCAAGGTTGGCACGTCAACTGGGATCAGCG CAGGGGACCGAGCTATCACGCTCCACGCGTTGGCCGACTCCAAGGTGTGC TGCAAGAGAGATGTTCCCACAGACGAAATACAACTCTAGCAAATCATTGC CCGAGCTGCGGTTTGCTCAGATGATCAAGCCTCGGCAGATTCATAATAAA TACAGAGTCATTTATGTCTGTTGTCAGCTTGATTTCACATAGCGTCTGAG CGCCGCATCATATGTTCTCGCAATACGCAATATTCAATATACATTATAAT ACTACTCGATTTATTTTTATATCATATCTGCTGTTTGCAGGCAACGGCAG ACGACTTTTCCCGGCCGGGTCATGTTTTCCCTCTACGATACACGGTGAGC TAACTGAATTGATGTGTTCTCCTTTTTAGTGATTAAGTCCCCCGACGTTG TTTGCCCTGTAACCCCCCCACAATAAACTACAATAAAATACAAAACACTA CAGATAAAACAATACAGTGTAATTGTCAGGTGCCTTGAGATATACTCGTA TACTAATAGTAGCTTTTTCGGTATACGGCAATTCGTCGTTGTTGTTTCCT CTCGGTATACGGTATACGGTATACGGTGATGCCTTATACGGTAATGCCTT ATACGGTAATGCTAGGCTGGAGGAGTACTGAAGAGGGCAGGCCATACGGA AGCTGCGGTTGACTTGTCAAAGTTGGCGGGCTTGGCGCCGGTTGGCGTCC TATGCGAAATTACAACACCTGACGGAAAAAATATGGCGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110909:1170..2013-

>mRNA_H-elongata_contig110909.897.1 ID=mRNA_H-elongata_contig110909.897.1|Name=mRNA_H-elongata_contig110909.897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig110909:1170..2013- (Himanthalia elongata Himel1 dioecious)
ATGGTGCCGAATAATGAGGATCCGAAGATGACTGCCTTCACGGTCACCGT
TGATGCCAAGGTTGGCACGTCAACTGGGATCAGCGCAGGGGACCGAGCTA
TCACGCTCCACGCGTTGGCCGACTCCAAGATGGTGCCGAATAATGAGGAT
CCGAAGATGACTGCCTTCACGGTCACCGTTGATGCCAAGGTTGGCACGTC
AACTGGGATCAGCGCAGGGGACCGAGCTATCACGCTCCACGCGTTGGCCG
ACTCCAAGGCAACGGCAGACGACTTTTCCCGGCCGGGTCATGTTTTCCCT
CTACGATACACGGCAACGGCAGACGACTTTTCCCGGCCGGGTCATGTTTT
CCCTCTACGATACACGGCTGGAGGAGTACTGAAGAGGGCAGGCCATACGG
AAGCTGCGGTTGACTTGTCAAAGTTGGCGGGCTTGGCGCCGGTTGGCGTC
CTATGCGAAATTACAACACCTGACGGAAAAAATATGGCGAGGTGAGCTGG
AGGAGTACTGAAGAGGGCAGGCCATACGGAAGCTGCGGTTGACTTGTCAA
AGTTGGCGGGCTTGGCGCCGGTTGGCGTCCTATGCGAAATTACAACACCT
GACGGAAAAAATATGGCGAGGTGA
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