mRNA_H-elongata_contig11052.870.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot
Match: A0A6H5JI08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI08_9PHAE) HSP 1 Score: 238 bits (608), Expect = 5.440e-73 Identity = 157/297 (52.86%), Postives = 202/297 (68.01%), Query Frame = 1
Query: 85 VSGFGHLDSLVDDIKKKESDRVKLESQLRQLHLRAESEAADASQAKAELEAAQAERMSLQKRIGLLTRKNEDLAAENAKLLEEKCDFQRSMTNNEAKLKQNEDDLRRAQREFVEDLEKANLAYSRNRAVMNTLLGRKGVGCAEVPSPDEVDKLKQAAAKM-ELEARLQGVEAESLSFKREAAESVQKQESLKKEIISLQEKARNVNVTVTGTGGSVGHSKSQRRGDGGMGLESQRRQHQ------------RLSQLEQEVTHLEETCSRQAEYXXXXXEYTNSVEAANTQLMQQQQA 936
++GFGHL SLVDDI KK+ +R+KLESQLRQ +RA++E A ASQ K ELE A A+R+SLQ+ IGLL+R+NEDL AE AKL E+ DFQRSM NNEAKLK+NE DL++AQR FVE LEK+N +YSR+RAVMNTL+GR G+GCAE+PSP+E++ + AA+ EL+ARL VEAES + K+EAA S +KQ+ L++EI S + RN G GG S R D G G Q+ ++ LE E+ L +TC+RQ EY EY NSVEA N L ++Q+A
Sbjct: 1 MAGFGHLGSLVDDINKKDGERLKLESQLRQQRMRADAEEAKASQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKKAQRGFVESLEKSNASYSRHRAVMNTLVGRNGMGCAEIPSPEELEAFRGLAARAAELQARLHAVEAESQALKQEAATSSRKQQVLRREIDSFK---RN------GAGGKS--SAGSPRVDKGSGKNKQQTXXXXXXXXXXXXXXXHITALENEIARLNDTCNRQMEYMSQLEEYANSVEAINEDLRKEQEA 286
BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot
Match: D8LN29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN29_ECTSI) HSP 1 Score: 209 bits (533), Expect = 1.900e-63 Identity = 122/198 (61.62%), Postives = 157/198 (79.29%), Query Frame = 1
Query: 85 VSGFGHLDSLVDDIKKKESDRVKLESQLRQLHLRAESEAADASQAKAELEAAQAERMSLQKRIGLLTRKNEDLAAENAKLLEEKCDFQRSMTNNEAKLKQNEDDLRRAQREFVEDLEKANLAYSRNRAVMNTLLGRKGVGCAEVPSPDEVDKLKQAAAKM-ELEARLQGVEAESLSFKREAAESVQKQESLKKEIISL 675
++GFGHL SLVDDI K++ +R+KLESQLRQ +RA++E A SQ K ELE A A+R+SLQ+ IGLL+R+NEDL AE AKL E+ DFQRSM NNEAKLK+NE DL+ AQR FV+ LEK+N +YSR+RAVMN L+GR GVGCAE+PSP+E++ + AA+ EL+ARL VEAES + K+EAA S +KQ+ L++EI S
Sbjct: 1 MAGFGHLGSLVDDINKRDGERLKLESQLRQQRMRADAEEAKVSQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKEAQRGFVDSLEKSNASYSRHRAVMNNLVGRNGVGCAEIPSPEELEAFRGLAARAAELQARLHAVEAESQALKQEAAASSRKQKVLQREIDSF 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11052.870.1 >prot_H-elongata_contig11052.870.1 ID=prot_H-elongata_contig11052.870.1|Name=mRNA_H-elongata_contig11052.870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp PITGVSFSGASTSSSLSKHVTIDINMQHVSGFGHLDSLVDDIKKKESDRVback to top mRNA from alignment at H-elongata_contig11052:993..5272+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11052.870.1 ID=mRNA_H-elongata_contig11052.870.1|Name=mRNA_H-elongata_contig11052.870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4280bp|location=Sequence derived from alignment at H-elongata_contig11052:993..5272+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11052:993..5272+ >mRNA_H-elongata_contig11052.870.1 ID=mRNA_H-elongata_contig11052.870.1|Name=mRNA_H-elongata_contig11052.870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1872bp|location=Sequence derived from alignment at H-elongata_contig11052:993..5272+ (Himanthalia elongata Himel1 dioecious)back to top |