prot_H-elongata_contig11052.870.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig11052.870.1
Unique Name	prot_H-elongata_contig11052.870.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	312

Homology

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BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot
Match: A0A6H5JI08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI08_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 5.440e-73
Identity = 157/297 (52.86%), Postives = 202/297 (68.01%), Query Frame = 0

Query:   29 VSGFGHLDSLVDDIKKKESDRVKLESQLRQLHLRAESEAADASQAKAELEAAQAERMSLQKRIGLLTRKNEDLAAENAKLLEEKCDFQRSMTNNEAKLKQNEDDLRRAQREFVEDLEKANLAYSRNRAVMNTLLGRKGVGCAEVPSPDEVDKLKQAAAKM-ELEARLQGVEAESLSFKREAAESVQKQESLKKEIISLQEKARNVNVTVTGTGGSVGHSKSQRRGDGGMGLESQRRQHQ------------RLSQLEQEVTHLEETCSRQAEYXXXXXEYTNSVEAANTQLMQQQQA 312
            ++GFGHL SLVDDI KK+ +R+KLESQLRQ  +RA++E A ASQ K ELE A A+R+SLQ+ IGLL+R+NEDL AE AKL E+  DFQRSM NNEAKLK+NE DL++AQR FVE LEK+N +YSR+RAVMNTL+GR G+GCAE+PSP+E++  +  AA+  EL+ARL  VEAES + K+EAA S +KQ+ L++EI S +   RN      G GG    S    R D G G   Q+                 ++ LE E+  L +TC+RQ EY     EY NSVEA N  L ++Q+A
Sbjct:    1 MAGFGHLGSLVDDINKKDGERLKLESQLRQQRMRADAEEAKASQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKKAQRGFVESLEKSNASYSRHRAVMNTLVGRNGMGCAEIPSPEELEAFRGLAARAAELQARLHAVEAESQALKQEAATSSRKQQVLRREIDSFK---RN------GAGGKS--SAGSPRVDKGSGKNKQQTXXXXXXXXXXXXXXXHITALENEIARLNDTCNRQMEYMSQLEEYANSVEAINEDLRKEQEA 286

[Close]

BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot
Match: D8LN29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN29_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.900e-63
Identity = 122/198 (61.62%), Postives = 157/198 (79.29%), Query Frame = 0

Query:   29 VSGFGHLDSLVDDIKKKESDRVKLESQLRQLHLRAESEAADASQAKAELEAAQAERMSLQKRIGLLTRKNEDLAAENAKLLEEKCDFQRSMTNNEAKLKQNEDDLRRAQREFVEDLEKANLAYSRNRAVMNTLLGRKGVGCAEVPSPDEVDKLKQAAAKM-ELEARLQGVEAESLSFKREAAESVQKQESLKKEIISL 225
            ++GFGHL SLVDDI K++ +R+KLESQLRQ  +RA++E A  SQ K ELE A A+R+SLQ+ IGLL+R+NEDL AE AKL E+  DFQRSM NNEAKLK+NE DL+ AQR FV+ LEK+N +YSR+RAVMN L+GR GVGCAE+PSP+E++  +  AA+  EL+ARL  VEAES + K+EAA S +KQ+ L++EI S 
Sbjct:    1 MAGFGHLGSLVDDINKRDGERLKLESQLRQQRMRADAEEAKVSQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKEAQRGFVDSLEKSNASYSRHRAVMNNLVGRNGVGCAEIPSPEELEAFRGLAARAAELQARLHAVEAESQALKQEAAASSRKQKVLQREIDSF 198

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot

BLAST of mRNA_H-elongata_contig11052.870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JI08_9PHAE	5.440e-73	52.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LN29_ECTSI	1.900e-63	61.62	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 187..228
None	No IPR available	COILS	Coil	Coil	coord: 285..312
None	No IPR available	COILS	Coil	Coil	coord: 35..111
None	No IPR available	COILS	Coil	Coil	coord: 119..146
None	No IPR available	COILS	Coil	Coil	coord: 261..281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig11052	contig	H-elongata_contig11052:993..5272 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig11052.870.1	mRNA_H-elongata_contig11052.870.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig11052 993..5272 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig11052.870.1 ID=prot_H-elongata_contig11052.870.1|Name=mRNA_H-elongata_contig11052.870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
PITGVSFSGASTSSSLSKHVTIDINMQHVSGFGHLDSLVDDIKKKESDRV
KLESQLRQLHLRAESEAADASQAKAELEAAQAERMSLQKRIGLLTRKNED
LAAENAKLLEEKCDFQRSMTNNEAKLKQNEDDLRRAQREFVEDLEKANLA
YSRNRAVMNTLLGRKGVGCAEVPSPDEVDKLKQAAAKMELEARLQGVEAE
SLSFKREAAESVQKQESLKKEIISLQEKARNVNVTVTGTGGSVGHSKSQR
RGDGGMGLESQRRQHQRLSQLEQEVTHLEETCSRQAEYISQLEEYTNSVE
AANTQLMQQQQA