mRNA_H-elongata_contig110065.824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110065.824.1
Unique NamemRNA_H-elongata_contig110065.824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A438CFA8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CFA8_VITVI)

HSP 1 Score: 204 bits (518), Expect = 1.440e-53
Identity = 140/391 (35.81%), Postives = 214/391 (54.73%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQ--VGLLKKAMYGLVHARLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGV--TKTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLG----SPTEGNRGGGTNLSAWV-DADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLR 1140
            +P T  EA    ++  WK A+  EM+     GVW +VE P G   +G + VFK K D  G+ E+YK RLV +G+ Q + + ++E++SP S + S R++++++     E  Q+DV  A+L  D++EE+Y+E P  + +  K+  V  L K++YGL  A    QC       G   + +V+YVDD+L+AS       +    L + F +KDLG ASY LG  I RDR  G     Q  YI+ + +RF +   K++  P V G +   K+  PQ D E EEM+ IPY  +VG+L+      R +I   +G LG    +P   +      + +WV DAD+  C D ++S +G   MMA GA+SW S  Q +TA+++ E+EYVA  E      ++R
Sbjct:  815 DPVTYQEAIHCPQFISWKEAMDDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQA--SRQC-------GSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKSTKAPIVKGDK-FSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLSWVCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYVACYEACCHAMWMR 1195          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 199 bits (505), Expect = 2.590e-52
Identity = 138/422 (32.70%), Postives = 210/422 (49.76%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQ--VGLLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTS--IIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1113
            +P T  +A +  E + W  A+  EM+  +S  VW +V  P G   +G + VFK K D  G  E+YK RLVA+GF Q + + Y E++SP S + S R++++++    +E  Q+DV  A+L   +EEE+Y++ PE +     +  V  L +++YGL  A                    +  QC+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I RDRN G     Q  YI  + ERF +   S  + P V G R    S  PQ D E E M+ IPY   VG+L+      R +I  A+G LG                                R     +  + D+DY  C DTR+S SG   M+ASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct:  432 DPETFSQAMSCKESNLWHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDR-FELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTDNLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 851          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 197 bits (501), Expect = 2.420e-51
Identity = 139/422 (32.94%), Postives = 213/422 (50.47%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAY--RDFRKQVGLLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1113
            +P    +A +  E   W  A+  EM+   S GVW +VE P G   +G + VFK K D  G  E+YK RLVA+GF Q + + Y E++SP S + S+R++L+++     E +Q+DV  A+L  D+EEE+Y++ PE +   D  + V  LKK++YGL  A                    +  QC+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I RDR  G     Q  YI  + ERF +     S+ P V G R    +  P+ D E E+M+ IPY   VG+L+      R +I  A+G LG                                R     +  + D+D+  C D+R+S SG   +MASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct:  685 DPEFFSQAMSCKESELWYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKSTSGYIFLMASGAVSWRSAKQTLTATSTMEAEFVSCFE 1104          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A329SK86_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SK86_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.600e-51
Identity = 139/402 (34.58%), Postives = 214/402 (53.23%), Query Frame = 1
Query:    4 DPEPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVGLLKKAMYGLVHA----------------RLPT----QCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGV--TKTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLIKRYNI-YGALGTLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLR 1140
            D  P T  +A  S+E S+W +A+  E+      G W ++ R      +G R VF +K D+ GR  +YK RLVA+GF+Q   + + E+YSP +   SIR+VLS++VA  +   QLDVD A+L +D++E +Y+E+P   ++    +  L KA+YGL  A                R+P     QCV+ +      V V + YVDD+++A     +  +    L S F +K+LG A + LG  I  +R AG+    Q +Y+  + +RF    +KT + P  +G + L K  SP T+AE ++MR  PYR ++GT  K Y I Y A             G   L A+ DAD+G+  D RRSVSG  V++    + + S+ Q   A +S+E+EY+AL+    E+ + R
Sbjct:  319 DDAPTTYTQAMKSNEASEWVKAMNAELHAHTDYGSWTLIRRNPDARPIGCRWVFAKKRDQHGRVARYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKTYVTEQLDVDTAFLNSDLKERVYMEVPYGIKNAENMMCQLNKAIYGLKQAGRERMVQDDPRGVHEDRVPQLRADQCVYVKGKKDKYVYVCL-YVDDMIIAVKNTTEINEVKTALKSAFKMKELGEAKFILGMKIDHNRTAGSLMIKQTRYVDDVVKRFNQEHSKTVVNPCETGMK-LSKLQSPATNAERDDMRSKPYRSLIGT--KEYGIIYDA-----------NNGKVKLEAFTDADWGSNLDDRRSVSGIMVLIGGAPVVFKSKYQCTVALSSAEAEYMALSLCTQEVLWAR 705          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO)

HSP 1 Score: 196 bits (499), Expect = 5.030e-51
Identity = 144/426 (33.80%), Postives = 217/426 (50.94%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVG-----LLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEGNRG--------------GGTN-------------LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1113
            +P T  +A +S E + W  A+  EMD   S  VW +VE P G   +G R VFK K D +G  E++K RLVA+GF Q + + Y E++SP S + S+R++L+++     E  Q+DV  A+L  D+EEE+Y++ PE    F   VG      L K++YGL  A                    +   C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I R+R+ G     Q  YI  + ERF +     S+ P V G + L  S  P+ D E E M+ IPY   VG+L+      R +I  A+G LG   + N G               GT              +  + D+D+  C D+RRS SG   M+ASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct: 1045 DPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKTKKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEG---FLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDK-LALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGR-YQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDCLEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 1464          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO)

HSP 1 Score: 196 bits (499), Expect = 5.550e-51
Identity = 144/426 (33.80%), Postives = 217/426 (50.94%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVG-----LLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEGNRG--------------GGTN-------------LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1113
            +P T  +A +S E + W  A+  EMD   S  VW +VE P G   +G R VFK K D +G  E++K RLVA+GF Q + + Y E++SP S + S+R++L+++     E  Q+DV  A+L  D+EEE+Y++ PE    F   VG      L K++YGL  A                    +   C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I R+R+ G     Q  YI  + ERF +     S+ P V G + L  S  P+ D E E M+ IPY   VG+L+      R +I  A+G LG   + N G               GT              +  + D+D+  C D+RRS SG   M+ASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct: 1819 DPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKTKKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEG---FLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDK-LALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGR-YQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDCLEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 2238          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A2N9GK36_FAGSY (Uncharacterized protein n=10 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GK36_FAGSY)

HSP 1 Score: 195 bits (495), Expect = 1.530e-50
Identity = 138/422 (32.70%), Postives = 212/422 (50.24%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAY--RDFRKQVGLLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1113
            +P +  +A +  E   W  A+  EM+   S GVW +VE P G   +G + VFK K D  G  E+YK RLVA+GF Q + + Y E++SP S + S+R++L+++     E +Q+DV  A+L  D+EEE+Y++ PE +   D    V  LKK++YGL  A                    +  QC+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I RDR  G     Q  YI  + +RF +     S+ P V G R    +  P+ D E E+M+ IPY   VG+L+      R +I  A+G LG                                R     +  + D+D+  C D+R+S SG   MMASGA+SW S  Q + A ++ E+E+V+  E
Sbjct:  726 DPESFSQAMSCKESELWYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKILKRFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKSTSGYIFMMASGAVSWRSAKQTLIATSTMEAEFVSCFE 1145          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A2N9I7X4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I7X4_FAGSY)

HSP 1 Score: 193 bits (490), Expect = 3.690e-50
Identity = 137/422 (32.46%), Postives = 212/422 (50.24%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAY--RDFRKQVGLLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1113
            +P++  +A +  E   W  A+  EM+   S GVW +VE P G   +G + VFK K D  G  E+YK  LVA+GF Q + + Y E++SP S + S+R++L+++     E +Q+DV  A+L  D+EEE+Y++ PE +   D    V  LKK++YGL  A                    +  QC+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I RDR  G     Q  YI  + +RF +     S+ P V G R    +  P+ D E E+M+ IPY   VG+L+      R +I  A+G LG                                R     +  + D+D+  C D+R+S SG   MMASGA+SW S  Q + A ++ E+E+V+  E
Sbjct:  390 DPKSFSQAMSCKESELWYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKAILVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKILKRFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTNNLEVIGYSDSDFAGCIDSRKSTSGYIFMMASGAVSWRSAKQTLIATSTMEAEFVSCFE 809          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 187 bits (475), Expect = 6.460e-50
Identity = 133/433 (30.72%), Postives = 218/433 (50.35%), Query Frame = 1
Query:    1 LDPEPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYR--DFRKQVGLLKKAMYGLVHA-------------------RLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTSIIPS-VSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLR 1140
            L+ +P ++ + + SS   +W +A+  EM      GVW +VE PKG   +G + +FK K D  G   +YK RLVA+GF Q + + Y+E++SP S++ S R++++++     E  Q+DV  A+L  +++E IY+  PE +   D ++ V  LK+++YGL  A                       QC++ +   G   +++V+YVDD+L+AS+      + +R L S F +KDLG AS+ LG  I RDR+ G     Q  YI  +  RFG++  +   + V+ G        P+ + E ++M + PY   VG+L+      R +I   +G LG                                R     + A+ D+D+  C D+RRS SG   M+A GA+SW S  Q + A+++ E+E++A  E  N   +LR
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRRSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLR 434          
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 193 bits (490), Expect = 7.580e-50
Identity = 149/447 (33.33%), Postives = 219/447 (48.99%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQV--KCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQ--VGLLKKAMYGLVHARLP--------------TQCV------FRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTSIIP-SVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLIKRYNIYGALGTLGSPT----------------------------EGNRG----GGTN---LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQV-KDFMIPQ 1167
            +PRT+ EA+ S +W QW+RAI  E D      V+ +VE P    ++G+++VF+ K D +G    +K RLVAQGF QV  +  H +E+++P S   SIR +LS+     WE RQ+DV  AYL   +EE +Y+ LP  +    +   V  LKK +YGL  A                 T+CV      ++R   G   +++   VDDL +   +   +  AV D+   F + DLG   + LG  + RDR A T    Q  YI T+  RF + + + +   +  G  L    SP T  + E+MR +PYRE VG+L     +Y A+GT    T                            +G+R      GTN   L  + DAD+G+  + R S+SG    +  GAISW S+ Q V A +S+E+EY+AL     E  +LR V  D + P+
Sbjct: 1027 DPRTLEEARQSPDWPQWQRAIDAEYDNLRRHDVFDLVEPPPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKR--EGESAIIVAASVDDLTITGTSDLVDAFAV-DIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSL-----MYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYGTNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHATKEAIWLRYVLSDILHPE 1465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110065.824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438CFA8_VITVI1.440e-5335.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3LA50_TRIPR2.590e-5232.70Putative retrotransposon Ty1-copia subclass protei... [more]
A0A2N9EM55_FAGSY2.420e-5132.94Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A329SK86_9STRA3.600e-5134.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A445FBE9_GLYSO5.030e-5133.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FAJ6_GLYSO5.550e-5133.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GK36_FAGSY1.530e-5032.70Uncharacterized protein n=10 Tax=Fagus sylvatica T... [more]
A0A2N9I7X4_FAGSY3.690e-5032.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A438HUL4_VITVI6.460e-5030.72Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8RWY5_9APHY7.580e-5033.33Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110065contigH-elongata_contig110065:575..2109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score126.7
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog15368.BRADI5G07075.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1378
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110065.824.1prot_H-elongata_contig110065.824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110065 596..1270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.7818313-UTR-H-elongata_contig110065:574..5951622929627.7818313-UTR-H-elongata_contig110065:574..595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 575..595 +
1691679097.1564748-UTR-H-elongata_contig110065:574..5951691679097.1564748-UTR-H-elongata_contig110065:574..595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 575..595 +
1622929627.8247-UTR-H-elongata_contig110065:1270..15031622929627.8247-UTR-H-elongata_contig110065:1270..1503Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 1271..1503 +
1691679097.1904235-UTR-H-elongata_contig110065:1270..15031691679097.1904235-UTR-H-elongata_contig110065:1270..1503Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 1271..1503 +
1622929627.8390553-UTR-H-elongata_contig110065:1603..21091622929627.8390553-UTR-H-elongata_contig110065:1603..2109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 1604..2109 +
1691679097.2007535-UTR-H-elongata_contig110065:1603..21091691679097.2007535-UTR-H-elongata_contig110065:1603..2109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 1604..2109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.79695-CDS-H-elongata_contig110065:595..10541622929627.79695-CDS-H-elongata_contig110065:595..1054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 596..1054 +
1691679097.172884-CDS-H-elongata_contig110065:595..10541691679097.172884-CDS-H-elongata_contig110065:595..1054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 596..1054 +
1622929627.8088732-CDS-H-elongata_contig110065:1111..12701622929627.8088732-CDS-H-elongata_contig110065:1111..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 1112..1270 +
1691679097.1813128-CDS-H-elongata_contig110065:1111..12701691679097.1813128-CDS-H-elongata_contig110065:1111..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 1112..1270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110065.824.1

>prot_H-elongata_contig110065.824.1 ID=prot_H-elongata_contig110065.824.1|Name=mRNA_H-elongata_contig110065.824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQ
KLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVA
LGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVGLLKKAMYGLVH
ARLPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFL
IKDLG*
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mRNA from alignment at H-elongata_contig110065:575..2109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110065.824.1 ID=mRNA_H-elongata_contig110065.824.1|Name=mRNA_H-elongata_contig110065.824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1535bp|location=Sequence derived from alignment at H-elongata_contig110065:575..2109+ (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGAGAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTG GTCGCAATGGAAAAGGGCGATCGCGCGAGAGATGGATGGGCAAATTTCTC GAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGCTTGGC ACGAGAGTAGTTTTCAAGCAAAAACTCGACAAGGATGGAAGGACCGAGAA GTATAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAATGCATGC ACTACGAGGAATCCTACTCTCCGACTTCTGCGCAGGCCAGCATTAGGATG GTACTCAGCATGATCGTGGCTCTCGGCTGGGAGGCGCGGCAGCTGGATGT CGACATGGCCTACCTGGAGACCGATGTGGAGGAGGAGATCTACATTGAGC TCCCGGAGGCATACCGTGACTTCAGGAAGCAAGTCGGCCTACTAAAGAAG GCAATGTACGGACTCGTCCACGCCAGGCTGGTGTGGTAAAAAAGTTCGGG ATCGAGCTCGAGGAGAAGGGTTTTCAGATATGTCAAGCCGACCCAATGCG TGTTCCGGCGGATTCTCCACGGGATAGTGGTAGTCGTCATTGTGGTCTAT GTCGATGACCTGCTGGTTGCTAGTGCGACGAAACATGACGAGGAGCAAGC GGTGAGGGACCTGTGCTCCTGTTTCCTCATCAAGGATCTGGGGTAGGCTT CGTATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACAG ACCTTCGACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGT GACGAAGACCAGCATCATCCCGTCCGTGTCAGGAGGAAGAGCCCTTCCGA AATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATT CCCTACCGAGAAATCGTTGGGACCCTAATGTAGCCAGCGACGATGACCAG GACCGACATTTTATTTGCTGCGCACCAACTGGCGAAATTCAACGACAACC CCGGACCGATACACTGGAGGGTAGCCCAGAAAGCGCTACAATATTTATGG CGCACTCGGGACCTTGGGATCACCTACGGAGGGGAACCGGGGGGGGGGGA CCAATTTATCAGCGTGGGTCGACGCAGACTATGGCACCTGCCCGGACACG CGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGCTAGCGGGGCCATTAG TTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATCGG AATACGTCGCTCTGGCTGAGATGGTAAATGAGTTGCGTTTTCTACGACAG GTCAAAGACTTCATGATCCCCCAATCGACGTCGCCATCAAGATACACGAG GACAACGAAGACGCAATCAAGATGGCGAAATACCGCCTCAGCAGTCGACG AACGAGGCACGTGGACATCAAGCATCACATTGTCCGCAACGCGATCGAGG GGGGGGTGGTCCACGTGGAATACGTTCGGTCGGGGAACAGCACGCCGGCA TTCTCACGAAGTCCTTAGACGTCAAGACATTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig110065:575..2109+

>mRNA_H-elongata_contig110065.824.1 ID=mRNA_H-elongata_contig110065.824.1|Name=mRNA_H-elongata_contig110065.824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig110065:575..2109+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGTCGCAATGGAAAAGGGCGAT
CGCGCGAGAGATGGATGGGCAAATTTCTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAAGACGGTGCTTGGCACGAGAGTAGTTTTCAAGCAA
AAACTCGACAAGGATGGAAGGACCGAGAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTCAGGCAGGTCAAATGCATGCACTACGAGGAATCCTACTCTC
CGACTTCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGTGGCT
CTCGGCTGGGAGGCGCGGCAGCTGGATGTCGACATGGCCTACCTGGAGAC
CGATGTGGAGGAGGAGATCTACATTGAGCTCCCGGAGGCATACCGTGACT
TCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGACTCGTCCAC
GCCAGGCTGATGGGCGAGGCGCAAGCGTCGTCGGAGTGGTCGCAATGGAA
AAGGGCGATCGCGCGAGAGATGGATGGGCAAATTTCTCGAGGCGTGTGGC
AGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGCTTGGCACGAGAGTAGTT
TTCAAGCAAAAACTCGACAAGGATGGAAGGACCGAGAAGTATAAATGTCG
TCTCGTGGCGCAGGGTTTCAGGCAGGTCAAATGCATGCACTACGAGGAAT
CCTACTCTCCGACTTCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATG
ATCGTGGCTCTCGGCTGGGAGGCGCGGCAGCTGGATGTCGACATGGCCTA
CCTGGAGACCGATGTGGAGGAGGAGATCTACATTGAGCTCCCGGAGGCAT
ACCGTGACTTCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGA
CTCGTCCACGCCAGGCTGCCGACCCAATGCGTGTTCCGGCGGATTCTCCA
CGGGATAGTGGTAGTCGTCATTGTGGTCTATGTCGATGACCTGCTGGTTG
CTAGTGCGACGAAACATGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCC
TGTTTCCTCATCAAGGATCTGGGGTAGCCGACCCAATGCGTGTTCCGGCG
GATTCTCCACGGGATAGTGGTAGTCGTCATTGTGGTCTATGTCGATGACC
TGCTGGTTGCTAGTGCGACGAAACATGACGAGGAGCAAGCGGTGAGGGAC
CTGTGCTCCTGTTTCCTCATCAAGGATCTGGGGTAG
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