mRNA_H-elongata_contig109502.771.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: D7FS01_ECTSI (Beta-galactosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS01_ECTSI) HSP 1 Score: 268 bits (684), Expect = 1.160e-79 Identity = 135/214 (63.08%), Postives = 153/214 (71.50%), Query Frame = 1
Query: 1 RANVELPVASENVLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGG----------------DTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAW-------VRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKINIESPSENVLSVMVLRWSDASYLEDQ 573
RAN ELP AS NVL+LDG WRFALH PE A+ S FF + F E AA GG + GVRGADG W+DTPVPSCWQ+QGYDVPIYTN +YPFPV PP VPA NPTGCYRL FS+P+AW EQR+++LHFAGVD AFFAWVNG L GFSKDSRLPAEF+VT+++ S ++NVLSVMVLRWSDASYLEDQ
Sbjct: 127 RANPELPEASNNVLSLDGTWRFALHSCPEHALASRFFSRKFRE---AAAGGLLERGGSGVXXXXXXXXSGGVRGADGRWRDTPVPSCWQMQGYDVPIYTNIQYPFPVNPPTVPADNPTGCYRLEFSLPDAWGTSGXXXXXXRTAVEQRRVILHFAGVDSAFFAWVNGHLVGFSKDSRLPAEFEVTERVLYGSSAKNVLSVMVLRWSDASYLEDQ 337
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A6H5KER6_9PHAE (GH2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER6_9PHAE) HSP 1 Score: 240 bits (613), Expect = 4.570e-76 Identity = 127/214 (59.35%), Postives = 146/214 (68.22%), Query Frame = 1
Query: 1 RANVELPVASENVLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKG---------------VRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAW--------VRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKINIESPSENVLSVMVLRWSDASYLEDQ 573
RAN ELP AS+NVL+LDG WRFALH PE A+ S FF + F E A AGG +G VRGADG W+DTP GYDVPIYTN +YPFPV PP VP+ NPTGCYRL FS+P+AW EQR+++LHFAGVD AFFAWVNG L GFSKDSRLPAEF+VT+++ S ++NVLSVMVLRWSDASYLEDQ
Sbjct: 127 RANTELPEASKNVLSLDGTWRFALHSCPEHALASRFFSRNFREAA--AGGLLERGGSGVSXXXXXXXSGDVRGADGRWRDTP--------GYDVPIYTNIQYPFPVNPPTVPSDNPTGCYRLEFSLPDAWGTSGXXXXXXXXTAVEQRRVILHFAGVDSAFFAWVNGHLVGFSKDSRLPAEFEVTERVLYGSSAKNVLSVMVLRWSDASYLEDQ 330
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: S8CWP1_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CWP1_9LAMI) HSP 1 Score: 177 bits (449), Expect = 3.050e-49 Identity = 90/180 (50.00%), Postives = 111/180 (61.67%), Query Frame = 1
Query: 37 VLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
V +L G+W+F L SP+ + S F+ F D SW PVPS WQ+ G+D PIYTN YPFP+ PP VP NPTGCYR FS+P W E R+I LHF GVD AFFAW+NG G+S+DSRLPAEF++T+ + +ES N LSV+V+RWSD SYLEDQ
Sbjct: 87 VKSLSGSWKFFLGSSPDD-VPSKFYEISFD-----------------DSSWHSLPVPSNWQMHGFDKPIYTNVVYPFPLDPPNVPEDNPTGCYRTYFSIPSKW-------EGRRIFLHFEGVDSAFFAWINGHPVGYSQDSRLPAEFEITEFCHALESGQRNCLSVIVMRWSDGSYLEDQ 241
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A0K9PM40_ZOSMR (Glyco_hydro_2_N domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PM40_ZOSMR) HSP 1 Score: 169 bits (429), Expect = 5.490e-49 Identity = 86/180 (47.78%), Postives = 110/180 (61.11%), Query Frame = 1
Query: 37 VLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
V +L G W+F L +P+ FH F D SW PVPS WQ+ G+D PIYTN YPFP+ PP VP+ NPTGCYR F +P+ W + R+I+LHF GVD AFFAW+NG L G+S+DSRLPAEF++T + +S EN+L+V V+RWS+ SYLEDQ
Sbjct: 85 VKSLSGYWKFHLASNPDAVPHE------FHGTCFD------------DSSWDALPVPSNWQMHGFDTPIYTNIVYPFPLNPPYVPSENPTGCYRKNFHIPKEW-------KDRRILLHFEGVDSAFFAWLNGILVGYSEDSRLPAEFEITKWCHPFDSNMENILAVQVMRWSNGSYLEDQ 239
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A6P6FZK7_ZIZJJ (LOW QUALITY PROTEIN: uncharacterized protein LOC107412906 n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6FZK7_ZIZJJ) HSP 1 Score: 179 bits (454), Expect = 6.280e-49 Identity = 92/180 (51.11%), Postives = 112/180 (62.22%), Query Frame = 1
Query: 37 VLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
V +L G WRF L SP K ++ FH+ AF D WK PVPS WQ+ G+D PIYTNF YPFP PP VP NPTGCYR F +PE W + R+I+LHF VD AFFAW+NG G+S+DSRLPAEF++TD + I S ++NVL+V V +WSD SYLEDQ
Sbjct: 89 VKSLSGYWRFFLASSPSKVPEN------FHDSAFH------------DSEWKTLPVPSNWQMHGFDHPIYTNFTYPFPFDPPFVPKENPTGCYRTYFKIPEEW-------KGRRILLHFQAVDSAFFAWINGVPVGYSQDSRLPAEFEITDYCHPIGSGNKNVLAVQVFKWSDGSYLEDQ 243
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A835ZBT9_9STRA (Beta-galactosidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT9_9STRA) HSP 1 Score: 180 bits (456), Expect = 6.340e-49 Identity = 94/192 (48.96%), Postives = 115/192 (59.90%), Query Frame = 1
Query: 7 NVELPVASENVLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQ---GYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKINIESPSENVLSVMVLRWSDASYLEDQ 573
+V P AS +LDG W F L SPE+A+ + F+R+ H A W+ VP CWQLQ G D PIYTN +YP PVTPP VP NPTGCY V + W R+IVLHF GVD AF+ WVNG+L GFSKDSRLPAEFDVT+ +N + N ++VMV+RWSD ++LEDQ
Sbjct: 44 HVGAPEASPYTQSLDGDWNFKLFGSPEEALTTQFWRQSDHSPAE---------------QWRPLAVPGCWQLQLEPGADPPIYTNIQYPIPVTPPRVPERNPTGCYVRTVEVAQGWAG-------RRIVLHFGGVDSAFYVWVNGQLQGFSKDSRLPAEFDVTEALN--TTGANTVAVMVVRWSDGAFLEDQ 211
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: UPI001E8A8329 (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E8A8329) HSP 1 Score: 178 bits (452), Expect = 7.410e-49 Identity = 91/178 (51.12%), Postives = 111/178 (62.36%), Query Frame = 1
Query: 43 NLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
+L G WRF L SP K ++ FH+ AF D WK PVPS WQ+ G+D PIYTNF YPFP PP VP NPTGCYR F +PE W + R+I+LHF VD AFFAW+NG G+S+DSRLPAEF++TD + I S ++NVL+V V +WSD SYLEDQ
Sbjct: 20 SLSGYWRFFLASSPSKVPEN------FHDSAFH------------DSEWKTLPVPSNWQMHGFDHPIYTNFTYPFPFDPPFVPKENPTGCYRTYFQIPEEW-------KGRRILLHFQAVDSAFFAWINGVPVGYSQDSRLPAEFEITDYCHPIGSGNKNVLAVQVFKWSDGSYLEDQ 172
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A453GP06_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GP06_AEGTS) HSP 1 Score: 171 bits (434), Expect = 1.020e-48 Identity = 87/178 (48.88%), Postives = 110/178 (61.80%), Query Frame = 1
Query: 43 NLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
+L G W+F L SPE D F++ F D W+ PVPS WQ+ G+D PIYTN YPFP+ PP VP+ NPTGCYR+ F +P+ W + R+I+LHF VD AF AWVNG G+S+DSRLPAEF++TD + +S ENVL+V V+RWSD SYLEDQ
Sbjct: 94 SLSGHWKFRLAQSPETVPDK------FYDAQFN------------DSDWEALPVPSNWQMHGFDRPIYTNVTYPFPMNPPFVPSENPTGCYRMVFHIPKEW-------KGRRILLHFEAVDSAFLAWVNGVPIGYSQDSRLPAEFEITDCCHHCDSDKENVLAVQVMRWSDGSYLEDQ 246
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A1D6N0Y0_MAIZE (Glycoside hydrolase family 2 protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6N0Y0_MAIZE) HSP 1 Score: 176 bits (447), Expect = 2.720e-48 Identity = 90/178 (50.56%), Postives = 111/178 (62.36%), Query Frame = 1
Query: 43 NLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
+L G W+F L PS E +I F+ F D +W PVPS WQ+ G+D PIYTN YPFP+ PP VPA NPTGCYR F +P+ W + R+I+LHF VD AFFAWVNG L G+S+DSRLPAEF++TD + +S ENVL+V V+RWSD SYLEDQ
Sbjct: 90 SLSGYWKFLLSPSAE-SIPERFYYAHFD-----------------DSNWSGLPVPSNWQMHGFDRPIYTNVTYPFPLNPPFVPADNPTGCYRTVFHIPKEW-------KGRRILLHFEAVDSAFFAWVNGVLVGYSQDSRLPAEFEITDCCHPCDSDKENVLAVQVMRWSDGSYLEDQ 242
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Match: A0A6P3ZLS4_ZIZJJ (uncharacterized protein LOC107412905 n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZLS4_ZIZJJ) HSP 1 Score: 173 bits (438), Expect = 5.970e-48 Identity = 90/180 (50.00%), Postives = 110/180 (61.11%), Query Frame = 1
Query: 37 VLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGGDTKGVRGADGSWKDTPVPSCWQLQGYDVPIYTNFRYPFPVTPPEVPATNPTGCYRLAFSVPEAWVRPDAISEQRKIVLHFAGVDGAFFAWVNGRLAGFSKDSRLPAEFDVTDKIN-IESPSENVLSVMVLRWSDASYLEDQ 573
V +L G WRF L SP K ++ FH+ AF D WK PVPS WQ+ G+D PIYTN YPFP PP V NPTGCYR F +PE W + R+I+LHF VD AFFAW+NG G+S+DSRLPAEF++TD + I S ++NVL+V V +WSD SYLEDQ
Sbjct: 121 VKSLSGYWRFFLASSPSKVPEN------FHDSAFH------------DSEWKTLPVPSNWQMHGFDHPIYTNTTYPFPFDPPFVSKENPTGCYRTYFQIPEEW-------KGRRILLHFQAVDSAFFAWINGVPVGYSQDSRLPAEFEITDYCHPIGSGTKNVLAVQVFKWSDGSYLEDQ 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109502.771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109502.771.1 >prot_H-elongata_contig109502.771.1 ID=prot_H-elongata_contig109502.771.1|Name=mRNA_H-elongata_contig109502.771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp RANVELPVASENVLNLDGAWRFALHPSPEKAIDSAFFRKGFHEEAFAAGGback to top mRNA from alignment at H-elongata_contig109502:510..2082+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109502.771.1 ID=mRNA_H-elongata_contig109502.771.1|Name=mRNA_H-elongata_contig109502.771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1573bp|location=Sequence derived from alignment at H-elongata_contig109502:510..2082+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109502:510..2082+ >mRNA_H-elongata_contig109502.771.1 ID=mRNA_H-elongata_contig109502.771.1|Name=mRNA_H-elongata_contig109502.771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig109502:510..2082+ (Himanthalia elongata Himel1 dioecious)back to top |