mRNA_H-elongata_contig10864.703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10864.703.1
Unique NamemRNA_H-elongata_contig10864.703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A6H5KSX3_9PHAE (ATP-grasp domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSX3_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 4.170e-112
Identity = 171/232 (73.71%), Postives = 188/232 (81.03%), Query Frame = 1
Query:    1 AMAIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMV----GNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHHREEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVSAE 684
            A+AIWRYDKRP NGAPFVYFS +LMPSDG   ++V EYAF+ALDALG+ FGPTHTE+MMV    GN               + G GTPTL+EVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFD LPR+P  G   R+GRVVHLVS+VEGTLERI H EEIR +ESFAGIDVY DP  GGSG +KKTIDIRSDAGWVRLVH+ E +VERDYRRVVELMPTMYEVS +
Sbjct:  403 AVAIWRYDKRPANGAPFVYFSVKLMPSDGQAEQKVVEYAFKALDALGIKFGPTHTEIMMVDAHGGNDG-----------TTSSGEGTPTLVEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDALPRVPSTGKDSRYGRVVHLVSYVEGTLERIFHEEEIRNLESFAGIDVYADPKNGGSGHVKKTIDIRSDAGWVRLVHEKEEVVERDYRRVVELMPTMYEVSGD 623          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A835ZA87_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA87_9STRA)

HSP 1 Score: 203 bits (517), Expect = 4.190e-61
Identity = 114/232 (49.14%), Postives = 135/232 (58.19%), Query Frame = 1
Query:    1 AMAIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHHREEIRRMESFAGIDVYPDPAGGGSGV---LKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVSAES 687
            AMA+WRYDKRP NGAPFVY +T+L  + G +   V  YA QALDALGV  G  H EVM+  +G                    P LIE N RWHLTDF  L + CVGYNA++ T+ AYLD   FD LP  P        GRVVHLV H  GT+  + H   IR + SF  +DVY     G  GV   +  TIDIRSDAGWV L H D  +VE DYR +V LMPTM+EV  ++
Sbjct:  114 AMAVWRYDKRPANGAPFVYHATELRAASGREEGAVVAYAMQALDALGVRIGTAHIEVMLTRDG--------------------PRLIEYNGRWHLTDFRELCNDCVGYNAIDATVDAYLDHEAFDALPPAPLKLAAA--GRVVHLVCHTAGTVAAVRHGAAIRALRSFRAMDVY-----GAFGVGQRVSPTIDIRSDAGWVHLSHADAHVVEEDYRALVALMPTMFEVEVDA 318          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S2U7R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7R4_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.410e-49
Identity = 108/257 (42.02%), Postives = 148/257 (57.59%), Query Frame = 1
Query:    7 AIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPG------------RFDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHH--REEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVSAE-----SASFQSDRNDKA 720
            A+WRYDKRP+NGAPFVY +T+++ +D    R V +YA Q+LDALGV +G +H EV+                        +P L+EVN R H TDFAPLT AC+GYNA++  LAAYL               ++D LP LP       +G +VHLV HVEGT+  ++     EI  MES   +D+YP     G+ V  KT+DIR+DAG + +++DDE   +RDY R+VELMP ++ V +E     S   Q + +D A
Sbjct:  619 ALWRYDKRPMNGAPFVYHATEVVDADTTVGRAVCQYAMQSLDALGVHWGTSHVEVIAPDGDES----------------SSPRLVEVNCRQHNTDFAPLTSACMGYNALDMLLAAYLGDATEFPPNTEHMRLKWDTLPDLPVTRG---YGAIVHLVCHVEGTITGVNRDAMNEIEHMESVLNMDIYPQFLKIGNHV-SKTVDIRTDAGAIHIMNDDEEQFQRDYERIVELMPDLFPVDSEKDEATSEDIQGNASDNA 855          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S4RER7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RER7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.140e-46
Identity = 103/247 (41.70%), Postives = 141/247 (57.09%), Query Frame = 1
Query:    7 AIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDLLPR-----------LPPAGPGCRHGRVVHLVSHVEGTLERIHHR--EEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVSAESASFQSDR 708
            A+W+YDKR +NGAPFVY +T+L+ +D    R V EYA +ALDAL V +G +HTE+++                +       P L+EVN R H TDFAPLT A VGYNA++  LAAYL  G  D  P            LP       +G +VHL SHVEGT+E +++   EEI  M S   ++VYP     GS  ++KT+DIRSD GWV +++D+E    +DY R++ LM  M++V  E      +R
Sbjct:  634 ALWKYDKRSINGAPFVYHATELVDADTKVGRAVCEYAMEALDALNVHWGLSHTEIIV--------------EEDNENAEPQPRLVEVNCRQHNTDFAPLTTAAVGYNALDMLLAAYL--GDADDFPPHTEHMRLVWNDLPDLPVTRAYGAIVHLASHVEGTIEEVNYEALEEIEGMPSVMAMEVYPQFLSLGS-EIQKTVDIRSDTGWVHIMNDNEEQFLKDYNRIIWLMEKMFKVEEEEEXXXXER 863          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S4JSX9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JSX9_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.720e-45
Identity = 106/250 (42.40%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    7 AIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDLLP------RLP----PAGPGCR-HGRVVHLVSHVEGTLERIHHR--EEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVSAESASFQSDRNDK 717
            A+W+YDKRPVNGAPFVY +T+L+ +D +  R V  YA  +LDAL V +G +HTE+++                     R  P L+EVN R H TDFAPLT AC+GYNA++  LAAYL  G  D  P      RLP    P  P    +G +VHLVSH EGTL  ++    EE+  M+    ++VYP  +  G  + +KT+DIR+DAGW  L+ DD    +  Y R+VELMP ++ V+ E A  +    +K
Sbjct:  832 ALWKYDKRPVNGAPFVYHATELVDADTEVGRAVCAYAMDSLDALDVHWGMSHTEIIV----------DFEEDPETGETRPRPRLVEVNCRQHNTDFAPLTTACIGYNALDMLLAAYL--GDADEFPPNTEHKRLPWNDLPDLPVTHSYGAIVHLVSHAEGTLRAVNQDALEEVEDMKGVVAMEVYPQCSAVGESI-RKTVDIRTDAGWCHLMGDDATEFKDQYDRIVELMPKLF-VTEEDARKEEAEKEK 1067          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S3UVF3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVF3_HETAK)

HSP 1 Score: 159 bits (402), Expect = 4.730e-44
Identity = 94/242 (38.84%), Postives = 130/242 (53.72%), Query Frame = 1
Query:    4 MAIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVE--------ETLAAYLDPGRFDLLPRLPPAGPGCR-------------HGRVVHLVSHVEGTLERIHHREEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTM 666
            + +W+YDKRP NGAPFVY STQL+P+ G+  +RV +Y  + LDAL + +GP HTEV++   G                    P L+EVN RWHL D APLT ACVG +AV         E   A+ D G   +LP         R             HG +VHLV  VEG LER+ H   +  + +   +D++P+ A  G+ V K T+DI++DAG V L+ D    +ERDY  +++L  +M
Sbjct:   83 VGLWKYDKRPANGAPFVYHSTQLVPAKGEVEQRVLDYVVEVLDALEIQYGPAHTEVIVTDQG--------------------PALVEVNGRWHLADVAPLTRACVGRDAVALSADALLPECREAFHDAGPDGVLPSATAGEEPVRVIAYRGYPMSFQRHGMIVHLVCGVEGELERVDHLGALGALGTALAVDLFPEFAEPGARVTK-TVDIKTDAGAVTLLADSLEELERDYATILDLQKSM 303          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S1TTP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTP0_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.090e-43
Identity = 95/226 (42.04%), Postives = 130/226 (57.52%), Query Frame = 1
Query:    4 MAIWRYDKRPVNGAPFVYFSTQLMPSDG-DDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHHREEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVS 678
            +A+W Y K   NG  FVY +T+L P+   DDA  V  Y    +DALGV+ GPTHTE+ M  +G                    P LIEVN RWH TDF+ + +ACVGYNA + TL AYL P R   LP++P       HGR+VHLV + EGT+  + H  E + +ES     V+ +  G G  V   T+DIR+DAG+  L H+D  +VERDY++++E    M++V+
Sbjct:  302 VAVWEYHKIAANGGAFVYSATKLKPTATLDDAGGVYSYVADVMDALGVSHGPTHTELRMTKSG--------------------PVLIEVNCRWHDTDFSGICNACVGYNAHDLTLDAYLRPERVRDLPKMPLDLQA--HGRIVHLVCYAEGTVREVRHEAEAQALESCRAFKVHEE-FGVGEAVTP-TVDIRTDAGFAILWHEDPEVVERDYQQILEWQKDMFDVT 503          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S1YRH0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRH0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.000e-41
Identity = 92/241 (38.17%), Postives = 135/241 (56.02%), Query Frame = 1
Query:    7 AIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYL-------------DPGR--FDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHHR--EEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVS 678
            A+W YDKRP NGA FVY++T+L   DG++   +  Y  + LDAL + +G TH E+++  +G                    P L+EVN R H  DF PLT  C+GYN  +  L AYL             +P R  +D+LP  PP      +G +VHLV++  GTL R++     EI+RM S   ++VYP     G+  +  TIDIR+DAGWV++V+ +    ++DY R++ELMPT++E +
Sbjct:  138 AVWIYDKRPANGASFVYYATKLY--DGENMDELCNYVRKTLDALDIKWGITHNEIILTADG--------------------PRLVEVNCRQHNMDFIPLTMECIGYNIFDMLLGAYLGGEDDPFVYPMETEPERLNWDILPSNPPKR---MNGAMVHLVNYANGTLTRLNEDALREIQRMPSVMNMEVYPPFLQMGN-TISPTIDIRTDAGWVQMVNPNPNEFQKDYDRIIELMPTLFEAN 352          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A1Z5JBC6_FISSO (ATP-grasp domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBC6_FISSO)

HSP 1 Score: 157 bits (398), Expect = 1.160e-41
Identity = 91/234 (38.89%), Postives = 133/234 (56.84%), Query Frame = 1
Query:    7 AIWRYDKRPVNGAPFVYFSTQLMPSDGDD-ARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLD-PGRFDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHHREEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVSAESASFQS 702
            AIWRYDKRP NGA F YF T+L+ +  D+    V +Y    L+ LGV +G +H EV++  +                     PTL+EVN R H  DFAPLT AC+ YNA +  L AY      +D  P LP       HG +VHLV++  G+L ++HH E++  + S   ++VY +     S  L+ TIDIR+DAGWV+L+++D   ++ DY ++V  MP M+ VSA+ +  ++
Sbjct:  282 AIWRYDKRPANGAAFCYFQTKLVDAAADEHVTAVCDYVISTLNTLGVQWGLSHNEVIVRSDTLQ------------------PTLVEVNCRQHNMDFAPLTMACIRYNAFQMLLDAYFGGDDEWDRYPELPTLQA---HGCMVHLVNYARGSLVQVHHLEDMAALPSVLDLEVYAEFQ-TPSTWLEPTIDIRTDAGWVQLINEDPEALQHDYEQIVAWMPKMFSVSADDSKVKN 493          
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Match: A0A7S4T2U0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T2U0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.940e-40
Identity = 92/241 (38.17%), Postives = 135/241 (56.02%), Query Frame = 1
Query:    7 AIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFGPTHTEVMMVGNGXXXXXXXXXXXLNRAGGRGTPTLIEVNTRWHLTDFAPLTDACVGYNAVEETLAAYL-------------DPGR--FDLLPRLPPAGPGCRHGRVVHLVSHVEGTLERIHHR--EEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLVHDDERIVERDYRRVVELMPTMYEVS 678
            A+W YDKRP NGA FVY++T+L   DG++   +  Y  + LDAL + +G TH E+++  +G                    P L+EVN R H  DF PLT  C+GYN  +  L AYL             +P R  +D+LP  PP      +G +VHLV++  GTL R++     EI+RM S   ++VYP     G+  +  TIDIR+DAGWV++V+ +    ++DY R++ELMPT++E +
Sbjct:  299 AVWIYDKRPANGASFVYYATKLY--DGENMDELCNYVRKTLDALDIKWGITHNEIILTADG--------------------PRLVEVNCRQHNMDFIPLTMECIGYNIFDMLLGAYLGGEDDPFVYPMETEPERLNWDILPSNPPKR---MNGAMVHLVNYANGTLTRLNEDALREIQRMPSVMNMEVYPPFLQMGN-TISPTIDIRTDAGWVQMVNPNPNEFQKDYDRIIELMPTLFEAN 513          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10864.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSX3_9PHAE4.170e-11273.71ATP-grasp domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZA87_9STRA4.190e-6149.14ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2U7R4_9STRA3.410e-4942.02Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4RER7_9STRA4.140e-4641.70Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4JSX9_9STRA1.720e-4542.40Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3UVF3_HETAK4.730e-4438.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TTP0_9STRA1.090e-4342.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1YRH0_9STRA1.000e-4138.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JBC6_FISSO1.160e-4138.89ATP-grasp domain-containing protein n=1 Tax=Fistul... [more]
A0A7S4T2U0_9STRA1.940e-4038.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10864contigH-elongata_contig10864:4774..7425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.5
Seed ortholog evalue6.2e-94
Seed eggNOG ortholog2880.D7FY34
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2S0EE@2759,COG0439@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size723
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10864.703.1prot_H-elongata_contig10864.703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10864 4777..7425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.4717271-UTR-H-elongata_contig10864:4773..47761622929614.4717271-UTR-H-elongata_contig10864:4773..4776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10864 4774..4776 +
1691679091.8324625-UTR-H-elongata_contig10864:4773..47761691679091.8324625-UTR-H-elongata_contig10864:4773..4776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10864 4774..4776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.4862695-CDS-H-elongata_contig10864:4776..48471622929614.4862695-CDS-H-elongata_contig10864:4776..4847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 4777..4847 +
1691679091.8495936-CDS-H-elongata_contig10864:4776..48471691679091.8495936-CDS-H-elongata_contig10864:4776..4847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 4777..4847 +
1622929614.5074477-CDS-H-elongata_contig10864:5507..55991622929614.5074477-CDS-H-elongata_contig10864:5507..5599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 5508..5599 +
1691679091.8606682-CDS-H-elongata_contig10864:5507..55991691679091.8606682-CDS-H-elongata_contig10864:5507..5599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 5508..5599 +
1622929614.5394201-CDS-H-elongata_contig10864:6438..67521622929614.5394201-CDS-H-elongata_contig10864:6438..6752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 6439..6752 +
1691679091.8693166-CDS-H-elongata_contig10864:6438..67521691679091.8693166-CDS-H-elongata_contig10864:6438..6752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 6439..6752 +
1622929614.552138-CDS-H-elongata_contig10864:7182..74251622929614.552138-CDS-H-elongata_contig10864:7182..7425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 7183..7425 +
1691679091.8816307-CDS-H-elongata_contig10864:7182..74251691679091.8816307-CDS-H-elongata_contig10864:7182..7425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 7183..7425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10864.703.1

>prot_H-elongata_contig10864.703.1 ID=prot_H-elongata_contig10864.703.1|Name=mRNA_H-elongata_contig10864.703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp
MAIWRYDKRPVNGAPFVYFSTQLMPSDGDDARRVAEYAFQALDALGVTFG
PTHTEVMMVGNGGGGEDSSDDCCLNRAGGRGTPTLIEVNTRWHLTDFAPL
TDACVGYNAVEETLAAYLDPGRFDLLPRLPPAGPGCRHGRVVHLVSHVEG
TLERIHHREEIRRMESFAGIDVYPDPAGGGSGVLKKTIDIRSDAGWVRLV
HDDERIVERDYRRVVELMPTMYEVSAESASFQSDRNDKA*
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mRNA from alignment at H-elongata_contig10864:4774..7425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10864.703.1 ID=mRNA_H-elongata_contig10864.703.1|Name=mRNA_H-elongata_contig10864.703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2652bp|location=Sequence derived from alignment at H-elongata_contig10864:4774..7425+ (Himanthalia elongata Himel1 dioecious)
GCGATGGCAATTTGGCGGTACGACAAGCGACCGGTAAACGGGGCCCCCTT CGTCTACTTTTCCACCCAACTGATGTGAGGGAAACATAAATAGAAGCCAT TCTCTTATTCGCCCTGCTTTCTCTGTGATAAAAAGAAGGGAACGCCCATA GGGAACGCCCCCCCCCCACTTCCGATGAAAATGTGAAAATTTTGAAACAA GAGGTAAAATTAAAATCAAAATCAAGATCAAGGGGCAAGAGAGGGCAGGG GTAACTTTTGTCACGGAATGTTCCGAAACGAAACAGTCTCAACCGCCCCA ACAACTATTCGATTCTAGCTATAGCGTGGTTCTGTGGAGAAAGAGACTAT TACTAGTATATTATAGTGTGGAGGAGAGGGAGGGGGGTTACCTTGAGGAG GCGGCGTTCTCAAAAAGGCCTGTACCTTGCATCATGGTTACGTTTTATAA ATATATTTATATATACATATATATATATTTTTCTTTTTGCAATGCGGTGG GTTTGCGCGCCGCGGCATAACATGAGCTTTACAAGGATAATGGCCATATC GGTACCCAGAAATACTCTTACCTAGCGCGCCACGTCCTGGAAGGTATTTG CCTATCAGTATGACTAGGTCTGGGAAGGTTCTAGACGACCCCCCCCCCCC CCCCCCCCCCCCCCCCCGCCCCCATGTCCCCCCGAAGCGGTAACATCCCT AACGCGTTTGTTTATCACGATACGGTGAAAGCAGGCCGTCAGATGGAGAC GACGCGCGGAGGGTGGCGGAGTACGCCTTCCAGGCTCTGGACGCCCTCGG CGTAACGTTCGGCCCGACGCACACCGGTGACGGAGCGCAAGCCAACGAGC AACGGTCGTTTCTCGGGGGGAACGGGGGGCAGAACTCTAGCGAGGTTTAT TTGATCCGTGGGCGTTGGTATTGGACGGAAGTTGTTTTTGGCGTTGTGGT TTGAGTTTTGAAAAATAATAATAATAATAATATAGTTGTTAATAATAATA ATATTAGAGTGGTTAATAATAATAATAATAACGTGGAAGGTCGGGGTTCG ATCCACAAGAAGCTAATTTCGCATCTCTTGGCAAGCCATTTATACTTTAC TTTTAAGAGTATTTAACGTGTGATAAGGGTCTGATATCCCCCCCCTCTTC TCCACTGGGCCTCCTCGCCATCTTAACATCTCGGGGACCCGATCTTCGTG NNNNNNNNNNCTGACACCCTGCCTTTCTTCTCCTTTGGCCCTTTTCTTTT TCTTTTGTTCACGGGCTCCTGTTCTTCGTGTCTTTTTTTTTTTATCATAT TCAACGAAGAGCTGGGTGCGTATGTTTGAGGCTTGCTTGTCATCCTCAAG TTCAGGGAGGGGACAGTGTCAAAAAGCCCCTTCCGGGGATGAAGCTACTC ATCCCCCCTACCTGTGGTAATGGGTTACATGTCCCGAACACAATTTCATT CCGCTTTAGTAGGGGATTTCCCAAATCTGTCCCCGGCAGGGAAAGAGGAG TGGGGGGGGGATATTACCACCCCCTTTAAAGTTGGTAATATATTCTTTCG GTGTAAAATATACCCGCTTTCTTCTTCCGCGTTGAACAACTTAAGCTGTA TTTCTTCTGCCCCAACACTGTGCTGTACTGCATGATCCTCACCCCGCGCT TTGTGCCACGTCCAGAGGTGATGATGGTCGGTAACGGCGGCGGCGGGGAG GATTCCAGCGATGACTGTTGCCTTAACCGTGCGGGGGGGAGGGGAACACC GACCCTAATAGAGGTGAACACTCGGTGGCACCTGACGGATTTCGCGCCAC TGACCGATGCCTGCGTCGGGTACAACGCGGTGGAGGAAACCCTGGCGGCG TATCTTGATCCGGGGAGGTTTGATTTGCTCCCCCGGTTACCTCCAGCCGG ACCGGGCTGCCGACACGGCCGGGTGGTGCATCTGGTGTCTCACGTGGAGG GCACTCTCGAACGTATACATCACCGAGAGGTGAGGTGGGCGCCAGCTAGG TTAACTGCTTGTAATTTTTATGAAAGTGAAGGCTTCAGAATGATCTCGCG ATCCATTCCCATTCTTCCAGCAAGAGGAAAGAGAATGGGGCTGCGCAGGC CCCATAATGCACTATTTAGGCATTCATGCCATGACGGGCAATCGGAGGCA ATGGCTACGTGCGCAACTACGCGGCGGCCGTCCAGCATTTGAAAGCCCTA GTACTAGAATTGAGGGAGATTCGTGTGTAGAGATCCGAGAGCTCGGTGTA ATCTTATCATATCTGCGGCCCAAAGCATTTTGAGAAAAATGTAGTTACCT CCCTTCTCAATTCTCAGAATCTCCCCGCAGAAACGTGTTGTCGCAACCCC CCGCGTCATTGTCCTCAAGCGTGCGCGCGGCGTCTTGCTTTTGTGTGCGT GTGATCCAGGAGATCCGAAGGATGGAGAGCTTTGCGGGGATAGACGTGTA TCCGGACCCGGCCGGGGGAGGGTCGGGCGTTTTGAAAAAGACGATCGACA TTCGCAGCGACGCGGGATGGGTGAGGCTCGTCCACGACGACGAACGAATC GTTGAGAGGGATTACCGACGGGTGGTGGAGCTCATGCCCACCATGTACGA GGTCTCAGCAGAGTCGGCGTCTTTTCAAAGCGACAGAAACGATAAGGCGT GA
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Coding sequence (CDS) from alignment at H-elongata_contig10864:4774..7425+

>mRNA_H-elongata_contig10864.703.1 ID=mRNA_H-elongata_contig10864.703.1|Name=mRNA_H-elongata_contig10864.703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at H-elongata_contig10864:4774..7425+ (Himanthalia elongata Himel1 dioecious)
ATGGCAATTTGGCGGTACGACAAGCGACCGGTAAACGGGGCCCCCTTCGT
CTACTTTTCCACCCAACTGATATGGCAATTTGGCGGTACGACAAGCGACC
GGTAAACGGGGCCCCCTTCGTCTACTTTTCCACCCAACTGATGCCGTCAG
ATGGAGACGACGCGCGGAGGGTGGCGGAGTACGCCTTCCAGGCTCTGGAC
GCCCTCGGCGTAACGTTCGGCCCGACGCACACCGGCCGTCAGATGGAGAC
GACGCGCGGAGGGTGGCGGAGTACGCCTTCCAGGCTCTGGACGCCCTCGG
CGTAACGTTCGGCCCGACGCACACCGAGGTGATGATGGTCGGTAACGGCG
GCGGCGGGGAGGATTCCAGCGATGACTGTTGCCTTAACCGTGCGGGGGGG
AGGGGAACACCGACCCTAATAGAGGTGAACACTCGGTGGCACCTGACGGA
TTTCGCGCCACTGACCGATGCCTGCGTCGGGTACAACGCGGTGGAGGAAA
CCCTGGCGGCGTATCTTGATCCGGGGAGGTTTGATTTGCTCCCCCGGTTA
CCTCCAGCCGGACCGGGCTGCCGACACGGCCGGGTGGTGCATCTGGTGTC
TCACGTGGAGGGCACTCTCGAACGTATACATCACCGAGAGAGGTGATGAT
GGTCGGTAACGGCGGCGGCGGGGAGGATTCCAGCGATGACTGTTGCCTTA
ACCGTGCGGGGGGGAGGGGAACACCGACCCTAATAGAGGTGAACACTCGG
TGGCACCTGACGGATTTCGCGCCACTGACCGATGCCTGCGTCGGGTACAA
CGCGGTGGAGGAAACCCTGGCGGCGTATCTTGATCCGGGGAGGTTTGATT
TGCTCCCCCGGTTACCTCCAGCCGGACCGGGCTGCCGACACGGCCGGGTG
GTGCATCTGGTGTCTCACGTGGAGGGCACTCTCGAACGTATACATCACCG
AGAGGAGATCCGAAGGATGGAGAGCTTTGCGGGGATAGACGTGTATCCGG
ACCCGGCCGGGGGAGGGTCGGGCGTTTTGAAAAAGACGATCGACATTCGC
AGCGACGCGGGATGGGTGAGGCTCGTCCACGACGACGAACGAATCGTTGA
GAGGGATTACCGACGGGTGGTGGAGCTCATGCCCACCATGTACGAGGTCT
CAGCAGAGTCGGCGTCTTTTCAAAGCGACAGAAACGATAAGGCGTGAGAG
ATCCGAAGGATGGAGAGCTTTGCGGGGATAGACGTGTATCCGGACCCGGC
CGGGGGAGGGTCGGGCGTTTTGAAAAAGACGATCGACATTCGCAGCGACG
CGGGATGGGTGAGGCTCGTCCACGACGACGAACGAATCGTTGAGAGGGAT
TACCGACGGGTGGTGGAGCTCATGCCCACCATGTACGAGGTCTCAGCAGA
GTCGGCGTCTTTTCAAAGCGACAGAAACGATAAGGCGTGA
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