mRNA_H-elongata_contig108167.664.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.490e-49 Identity = 113/336 (33.63%), Postives = 179/336 (53.27%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVEPMTTS-------SVPT-----LSNADEPRNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYG-GQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
S+R++ A A ++ L HFD ++AF++ D+DE++ + + EG G + +LNK++YGL Q R + + +GF Q D C+F + +G + VVHVDDI + E+ D+F +L +K++ D R+Y GC R+ A LKI+ Y E + +P LS D+ EE+ +P+ E + LMW AT TR IA+ +RAV ++C +P H + + I+ Y++ D I + G L ME + + S R SVSG ++M G ISW+SR + T+++EYV+L++ +KEVLFLRQV
Sbjct: 20 SVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQD-----EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 349
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 180 bits (456), Expect = 3.270e-48 Identity = 113/336 (33.63%), Postives = 179/336 (53.27%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVEPMTTS-------SVPT-----LSNADEPRNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYG-GQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
S+R++ A A ++ L HFD ++AF++ D+DE++ + + EG G + +LNK++YGL Q R + + +GF Q D C+F + +G + VVHVDDI + E+ D+F +L +K++ D R+Y GC R+ A LKI+ Y E + +P LS D+ EE+ +P+ E + LMW AT TR IA+ +RAV ++C +P H + + I+ Y++ D I + G L ME + + S R SVSG ++M G ISW+SR + T+++EYV+L++ +KEVLFLRQV
Sbjct: 194 SVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQD-----EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 523
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 180 bits (456), Expect = 5.080e-47 Identity = 113/336 (33.63%), Postives = 179/336 (53.27%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVEPMTTS-------SVPT-----LSNADEPRNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYG-GQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
S+R++ A A ++ L HFD ++AF++ D+DE++ + + EG G + +LNK++YGL Q R + + +GF Q D C+F + +G + VVHVDDI + E+ D+F +L +K++ D R+Y GC R+ A LKI+ Y E + +P LS D+ EE+ +P+ E + LMW AT TR IA+ +RAV ++C +P H + + I+ Y++ D I + G L ME + + S R SVSG ++M G ISW+SR + T+++EYV+L++ +KEVLFLRQV
Sbjct: 715 SVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQD-----EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 1044
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE) HSP 1 Score: 176 bits (446), Expect = 1.150e-45 Identity = 115/338 (34.02%), Postives = 190/338 (56.21%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGV-VHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVE------------PMTTSSVPT--LSNADEPRNLD-KEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYGG-QSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLR 963
SIR +LA AA +D +++ DA AFL+ D+ EE+ + EGY+ G V RL K++YGL Q R K + TIG +QS DPC++ K + +MV V V VDD+L + +K ++L + FK+ D+ +A++ +G I+R+R+ +++ ++ Y++ P T P LS +P + D ++++ PY EAV L++ + + R IA + V +F NPGPAH V +I++Y+ DW ++Y G +S+E+ Y F S +D R SV+G V ++ G++SW ++ TA T+++EY+ LS A +E L+LR
Sbjct: 932 SIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQ-ESGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYK--SSQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKSSEI--TGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLR 1264
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 165 bits (418), Expect = 5.670e-42 Identity = 104/333 (31.23%), Postives = 172/333 (51.65%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*F-PGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLY---------VEPMTTSSVPTLSNADEPRNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYGGQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
++R +L A +D EL+ D + AFL +++EE+ ++ +GYE P V RL KTIYGL Q R K ++ I F+ S D +F V+DGE V VV VDDIL + + + + A L +KF ++D+ A Y++G +TR+R+AR +K+ +E S P S R D + K+PY E V L++ + TR IA + A+ ++ P H + + + +YL + + +GG + L Y + +D+R S +G V ++ GA SW SR+ A+ T ++EY++ + A KE L+L+++
Sbjct: 653 TLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGERVWV-VVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGLEAAKARSTPLSSGEKLQREGDPLDTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMAGPTEEHWRAALGVARYLSGTAELGVTFGGSAEPL--VGYADADYAGDVDSRRSTTGYVFLVYGGAASWSSRLQPTVAASTVEAEYMSAASAAKEALWLKKL 982
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI) HSP 1 Score: 163 bits (413), Expect = 2.800e-41 Identity = 104/333 (31.23%), Postives = 172/333 (51.65%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*F-PGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINP---------HLYVEPMTTSSVPTLSNADEPRNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYGGQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
++R +L A +D EL+ D + AFL +++EE+ ++ +GYE P V RL KTIYGL Q R + ++ I F+ S D +F VVDGE V VV VDDIL + + + A L +KF ++D+ A Y++G +TR+R+AR +K+ +E S P S + D + K+PY E V L++ + TR IA + A+ ++ P H + + +++YL + + +GG + L Y + +D+R S +G V ++ GA SW SR+ A+ T ++EY++ + A KE L+LR++
Sbjct: 928 TLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGERVWV-VVWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQKKLTKELLGRYELEAAKARSTPLSSGEKLQKEGDPLDTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMSGPTQEHWRAALGVVRYLSGTAELGVTFGGSAEPL--VGYADADYAGDVDSRRSTTGYVFLVYGGAASWSSRLQPTVAASTVEAEYMSAASAAKEALWLRKL 1257
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU) HSP 1 Score: 159 bits (402), Expect = 8.350e-40 Identity = 107/340 (31.47%), Postives = 181/340 (53.24%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGY--E*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYV---------EPMTTSSVPT-----LSNADEPR-NLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYGGQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
SIR++L+ AAT D E+ D + AFL D++EE+ ++ +G+ E V RL K++YGL Q R KF + G+K++ D C+F+K + ++ +++VDDIL ++ + ++R +L + F +KDM A+ +G I R+R+ ++L ++ YV E S P LS P +K ++++ PY AV LM+ TR IA V+ V +F NPG H V I++YL + +GG L YT +D+R S SG V+ A GA++W SR+ + A T+++E++ ++EA KE+L+++++
Sbjct: 847 SIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTL--VGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKL 1184
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.420e-39 Identity = 104/331 (31.42%), Postives = 169/331 (51.06%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVEPMTTS-------SVPT-----LSNADEPRNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYG-GQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVL 954
S+R++ A A ++ L HFD ++AF++ D+DE++ + + EG G + +LNK++YGL Q R + + +GF Q D C+F + +G + VVHVD I + E+ D+F +L +K++ D R+Y GC R+ A LKI+ Y E + +P LS D+ EE+ +P+ + LMW AT TR IA+ +RAV ++C +P H + + I+ Y++ D I + G L ME + R SVSG ++M G ISW+SR + T+++EY +L++ +KEVL
Sbjct: 745 SVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDFIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQD-----EEVVSWPFRGLIGSLMWLATQTRPDIANAVRAVERYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVARLSMEVFADADCARKAADRRSVSGGLVMCVGGCISWFSRTQKCVTLSTTEAEYASLADVMKEVL 1069
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI) HSP 1 Score: 158 bits (400), Expect = 1.470e-39 Identity = 108/338 (31.95%), Postives = 176/338 (52.07%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGAVGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVEPMTT--------------SSVPTLSNADEPRNLDKE-EIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYGGQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLRQV 969
SIR I A AA D ++ DA AFL+ D+ EE+ + GY V RL K+IYGL Q R K + IG QS D C++ K DG +V V VDD L + K + L + FK+ DM A++ +G ITR+R ++++ I+ Y+E + SS LS+ EP++ ++ ++ K PY EAV L++ + ++R IA + +V +F NPGPAH V +I++Y+ D+ +++ G + + M Y + + +D R S++G + + ISW ++ A T+++EY++LS A +E L+LR +
Sbjct: 482 SIRFIFALAAQLDLDIDQMDAVSAFLQGDLTEEIYMTQPIGYRDNTNRVCRLKKSIYGLKQASRAWNLKLDACLKEIGLLQSKFDTCVYYKRSDGGLLIVAV-WVDDFLIFSDNKKLKKQLKTHLTKTFKMTDMGAAKFVLGFQITRDRNSKKIWISQQAYLEQVLKRFNMENSNPSRIPMSSNEKLSHQQEPKSEEERMKMNKIPYQEAVGSLLFASQVSRPDIAQAVNSVSRFNGNPGPAHWIAVKRILRYVRGTTDYKLQFDGNKSSV-MHGYCDADWAADIDERRSLTGYIFVKCDAPISWCTKRQPTVALSTTEAEYMSLSAATQEALWLRGI 817
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Match: A0A438IDT7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IDT7_VITVI) HSP 1 Score: 157 bits (397), Expect = 2.540e-39 Identity = 106/338 (31.36%), Postives = 174/338 (51.48%), Query Frame = 1
Query: 1 SIRMILATAATKDGELYHFDAEKAFLKVDIDEELDIEILEGYE*FPGA--VGRLNKTIYGLVQVDRCCANKFYDDVTTIGFKQSNEDPCMFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDARYYMGCHITRNRKARELKINPHLYVEPMTTS-SVPTLSNADEP--------------RNLDKEEIRKFPYWEAVEVLMWTATMTRQYIASVIRAVVKFCENPGPAHNKTVMKIMQYLLYKKDWAIKYGGQSNELWMEAYTTRIFLSYLDTRLSVSGAVLMLAKGAISWYSRMHEVTASRTSDSEYVTLSEAVKEVLFLR 963
S R+I+A A D EL+ D + AFL +IDE + + E +E V RL ++IYGL Q R KF +T+ GFK++ D C++LK G ++ V++VDDIL + + + L KF +KD+ +A + +G I R+R L ++ Y++ + + + + D P L+K+++++FPY AV LM+ R IA ++ + ++ NPG H K ++M+YL KD+ + Y +S+ L + Y+ F LD+R S SG + MLA GA+SW S + AS T ++E++ EA ++LR
Sbjct: 453 SFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNCAPGDTPVAKGDKFSLHQCPKNELEKKDMKRFPYASAVGSLMYAQVCMRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLR 788 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108167.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108167.664.1 >prot_H-elongata_contig108167.664.1 ID=prot_H-elongata_contig108167.664.1|Name=mRNA_H-elongata_contig108167.664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp MFLKVVDGEAEMVGVVHVDDILTRNREKATMDRFAAELGQKFKLKDMVDAback to top mRNA from alignment at H-elongata_contig108167:77..1084+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108167.664.1 ID=mRNA_H-elongata_contig108167.664.1|Name=mRNA_H-elongata_contig108167.664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig108167:77..1084+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108167:77..1084+ >mRNA_H-elongata_contig108167.664.1 ID=mRNA_H-elongata_contig108167.664.1|Name=mRNA_H-elongata_contig108167.664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig108167:77..1084+ (Himanthalia elongata Himel1 dioecious)back to top |