mRNA_H-elongata_contig107677.631.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107677.631.1
Unique NamemRNA_H-elongata_contig107677.631.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.080e-26
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 VVKVVYKYK-ESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHERGPY 270
            +VKV+YK+K + K  H+V+VGP GFQLC+CLQ+LR GL CRH +AALVT LKR+ EF+G+ IH RWRSS++ W+I  V L  F+G   G Y
Sbjct:  434 IVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSY 524          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.670e-25
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 VVKVVYKY----KESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHE 258
            VV+V YKY    +  K SHIVVVGP GFQLC+CL+++RCGLPC H  AALVT L RA +F G  IH RWR S+  W++ +V L  F+GHE
Sbjct:  479 VVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE 568          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.750e-25
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 VVKVVYKY----KESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHE 258
            VV+V YKY    +  K SHIVVVGP GFQLC+CL+++RCGLPC H  AALVT L RA +F G  IH RWR S+  W++ +V L  F+GHE
Sbjct:  825 VVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE 914          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.310e-24
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWR-SSLQLWAIDSVGLSIFNGHERGPY 270
            VVKVV  YK  K  H+VV+GP GFQLC+CLQ++R GL CRH +AALVTEL RA EF+GE+IH RWR +S+  W++D V L  F+   R  Y
Sbjct: 1262 VVKVV--YKRRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSY 1350          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.170e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 VKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRS-SLQLWAIDSVGL 237
            VKV YKY+    SH+VV+GP  FQ+C+CLQV+R G  CRH +AALV    R  EF G  IH RWR  S + W+++ V L
Sbjct:   88 VKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRWRPRSAEPWSLERVAL 165          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.530e-14
Identity = 45/101 (44.55%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWRSSLQ----LWAIDSVGLSIFNGHERG 264
            VV V YK+  ++PSH+VV G + F LCSCLQ+LRCGLPCR   A LV  + R  E         F G  +H RWR         W+I SV  S  +GH  G
Sbjct:  535 VVAVRYKWTANRPSHLVVFGHHNFHLCSCLQLLRCGLPCRDYFAVLVNLIGRTGESDEMAFTHTFNGSCVHNRWRRRKDGKDLPWSISSVLSS--SGHGVG 633          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.980e-13
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWR----SSLQLWAIDSV 231
            VV V YK+  ++PSH+VV GP+ F LCSCLQ+LR  LPCRH  A LV  + R  E         F G  +H RWR     +   W I SV
Sbjct:  945 VVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSV 1034          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.560e-13
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWR----SSLQLWAIDSVGLSIFNGHERG 264
            VV V Y    ++PSH+VV GP+ F LCSCLQ+LR GLPCRH  A LV  + R  E         F+G  +H RWR     +   W+I S+  S  +GH  G
Sbjct: 1168 VVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISSLLSS--SGHGVG 1266          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-12
Identity = 44/100 (44.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    4 VKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWRSSLQL----WAIDSVGLSIFNGHERG 264
            V V YK   ++PSH+VV G + F LCSCLQ+LR GLPCRH  A LV  + R  E         F G  +H RWR    +    W+I SV  S  +GH  G
Sbjct:  259 VAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSVLSS--SGHSVG 356          
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.360e-12
Identity = 36/70 (51.43%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   16 YKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRA-------QEFQGEYIHFRWRSS 204
            YK   S+P H+VVVGP GF LCSCL+ LR GLPCRH  A LV  +           EF G  +H RWR S
Sbjct:  295 YKLTPSRPGHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIGGKYGGVLLNHEFDGNSVHTRWRQS 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FLF6_ECTSI1.080e-2658.24Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE2.670e-2557.78SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE2.750e-2557.78SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE1.310e-2458.24SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE1.170e-1651.90SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB76_9PHAE8.530e-1444.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBY4_9PHAE2.980e-1345.56SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE5.560e-1343.56SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE1.340e-1244.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2H3_9PHAE1.360e-1251.43SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107677contigH-elongata_contig107677:1960..2232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue5.3e-22
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.5560567-CDS-H-elongata_contig107677:1959..22321622929606.5560567-CDS-H-elongata_contig107677:1959..2232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107677 1960..2232 +
1691679089.013119-CDS-H-elongata_contig107677:1959..22321691679089.013119-CDS-H-elongata_contig107677:1959..2232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107677 1960..2232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107677.631.1prot_H-elongata_contig107677.631.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107677 1960..2232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107677.631.1

>prot_H-elongata_contig107677.631.1 ID=prot_H-elongata_contig107677.631.1|Name=mRNA_H-elongata_contig107677.631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTEL
KRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHERGPYS
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mRNA from alignment at H-elongata_contig107677:1960..2232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107677.631.1 ID=mRNA_H-elongata_contig107677.631.1|Name=mRNA_H-elongata_contig107677.631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig107677:1960..2232+ (Himanthalia elongata Himel1 dioecious)
GTGGTTAAAGTCGTGTACAAGTACAAAGAGTCGAAACCCAGCCATATTGT TGTCGTCGGGCCTTATGGTTTCCAATTGTGTAGCTGCTTGCAGGTTTTGA GGTGCGGGCTACCGTGCAGGCATACAGTAGCAGCACTCGTAACCGAGCTC AAGCGCGCTCAAGAATTTCAAGGGGAATATATCCACTTCCGGTGGCGATC TTCGCTTCAACTATGGGCTATAGACTCTGTTGGGCTCAGTATCTTTAACG GTCACGAGCGTGGGCCATACTCG
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Coding sequence (CDS) from alignment at H-elongata_contig107677:1960..2232+

>mRNA_H-elongata_contig107677.631.1 ID=mRNA_H-elongata_contig107677.631.1|Name=mRNA_H-elongata_contig107677.631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig107677:1960..2232+ (Himanthalia elongata Himel1 dioecious)
GTGGTTAAAGTCGTGTACAAGTACAAAGAGTCGAAACCCAGCCATATTGT
TGTCGTCGGGCCTTATGGTTTCCAATTGTGTAGCTGCTTGCAGGTTTTGA
GGTGCGGGCTACCGTGCAGGCATACAGTAGCAGCACTCGTAACCGAGCTC
AAGCGCGCTCAAGAATTTCAAGGGGAATATATCCACTTCCGGTGGCGATC
TTCGCTTCAACTATGGGCTATAGACTCTGTTGGGCTCAGTATCTTTAACG
GTCACGAGCGTGGGCCATACTCGGTGGTTAAAGTCGTGTACAAGTACAAA
GAGTCGAAACCCAGCCATATTGTTGTCGTCGGGCCTTATGGTTTCCAATT
GTGTAGCTGCTTGCAGGTTTTGAGGTGCGGGCTACCGTGCAGGCATACAG
TAGCAGCACTCGTAACCGAGCTCAAGCGCGCTCAAGAATTTCAAGGGGAA
TATATCCACTTCCGGTGGCGATCTTCGCTTCAACTATGGGCTATAGACTC
TGTTGGGCTCAGTATCTTTAACGGTCACGAGCGTGGGCCATACTCG
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