mRNA_H-elongata_contig107677.631.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.080e-26 Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 1 VVKVVYKYK-ESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHERGPY 270
+VKV+YK+K + K H+V+VGP GFQLC+CLQ+LR GL CRH +AALVT LKR+ EF+G+ IH RWRSS++ W+I V L F+G G Y
Sbjct: 434 IVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSY 524
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.670e-25 Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 1 VVKVVYKY----KESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHE 258
VV+V YKY + K SHIVVVGP GFQLC+CL+++RCGLPC H AALVT L RA +F G IH RWR S+ W++ +V L F+GHE
Sbjct: 479 VVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE 568
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.750e-25 Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 1 VVKVVYKY----KESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRSSLQLWAIDSVGLSIFNGHE 258
VV+V YKY + K SHIVVVGP GFQLC+CL+++RCGLPC H AALVT L RA +F G IH RWR S+ W++ +V L F+GHE
Sbjct: 825 VVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE 914
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.310e-24 Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWR-SSLQLWAIDSVGLSIFNGHERGPY 270
VVKVV YK K H+VV+GP GFQLC+CLQ++R GL CRH +AALVTEL RA EF+GE+IH RWR +S+ W++D V L F+ R Y
Sbjct: 1262 VVKVV--YKRRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSY 1350
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.170e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 VKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQEFQGEYIHFRWRS-SLQLWAIDSVGL 237
VKV YKY+ SH+VV+GP FQ+C+CLQV+R G CRH +AALV R EF G IH RWR S + W+++ V L
Sbjct: 88 VKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRWRPRSAEPWSLERVAL 165
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 8.530e-14 Identity = 45/101 (44.55%), Postives = 55/101 (54.46%), Query Frame = 1
Query: 1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWRSSLQ----LWAIDSVGLSIFNGHERG 264
VV V YK+ ++PSH+VV G + F LCSCLQ+LRCGLPCR A LV + R E F G +H RWR W+I SV S +GH G
Sbjct: 535 VVAVRYKWTANRPSHLVVFGHHNFHLCSCLQLLRCGLPCRDYFAVLVNLIGRTGESDEMAFTHTFNGSCVHNRWRRRKDGKDLPWSISSVLSS--SGHGVG 633
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.980e-13 Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWR----SSLQLWAIDSV 231
VV V YK+ ++PSH+VV GP+ F LCSCLQ+LR LPCRH A LV + R E F G +H RWR + W I SV
Sbjct: 945 VVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSV 1034
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 5.560e-13 Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 1 VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWR----SSLQLWAIDSVGLSIFNGHERG 264
VV V Y ++PSH+VV GP+ F LCSCLQ+LR GLPCRH A LV + R E F+G +H RWR + W+I S+ S +GH G
Sbjct: 1168 VVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISSLLSS--SGHGVG 1266
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.340e-12 Identity = 44/100 (44.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 4 VKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRAQE---------FQGEYIHFRWRSSLQL----WAIDSVGLSIFNGHERG 264
V V YK ++PSH+VV G + F LCSCLQ+LR GLPCRH A LV + R E F G +H RWR + W+I SV S +GH G
Sbjct: 259 VAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSVLSS--SGHSVG 356
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.360e-12 Identity = 36/70 (51.43%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 16 YKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELKRA-------QEFQGEYIHFRWRSS 204
YK S+P H+VVVGP GF LCSCL+ LR GLPCRH A LV + EF G +H RWR S
Sbjct: 295 YKLTPSRPGHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIGGKYGGVLLNHEFDGNSVHTRWRQS 364 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107677.631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107677.631.1 >prot_H-elongata_contig107677.631.1 ID=prot_H-elongata_contig107677.631.1|Name=mRNA_H-elongata_contig107677.631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp VVKVVYKYKESKPSHIVVVGPYGFQLCSCLQVLRCGLPCRHTVAALVTELback to top mRNA from alignment at H-elongata_contig107677:1960..2232+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107677.631.1 ID=mRNA_H-elongata_contig107677.631.1|Name=mRNA_H-elongata_contig107677.631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig107677:1960..2232+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107677:1960..2232+ >mRNA_H-elongata_contig107677.631.1 ID=mRNA_H-elongata_contig107677.631.1|Name=mRNA_H-elongata_contig107677.631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig107677:1960..2232+ (Himanthalia elongata Himel1 dioecious)back to top |