mRNA_H-elongata_contig107543.621.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI) HSP 1 Score: 113 bits (283), Expect = 5.510e-27 Identity = 68/164 (41.46%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 1 MSEGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVS---------------------------------------KEGC-----------------------ETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHA 306
M++ I LAL+FLPLDAAP+AL+VTDG++DYP PTEYDGLSMRLCR DV+ G ETDR + PH +YA ARK R+PDL+GLAHL V+GG+ FDLETL A
Sbjct: 490 MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDVAVSCLLMDRMGERADVGVXXXXXXXXXATTASSVAVLPSGNRGATAVGRWLPAAAAAGGVGGAMGRYETDRVDISFAPHGEAYAAARKHRVPDLSGLAHLVGVTGGWLFDLETLEA 653
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE) HSP 1 Score: 113 bits (282), Expect = 7.630e-27 Identity = 68/165 (41.21%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 1 MSEGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVS----------------------------------------KEGC-----------------------ETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHA 306
M++ I LAL+FLPLDAAP+AL+VTDG++DYP PTEYDGLSMRLCR DV+ G ETDR + PH +YA ARK R+PDL+GLAHL V+GG+ FDLETL A
Sbjct: 482 MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDVAVSCLLMDRMGERADVGVGGGVXXXXXXXXXXSSVAVLPSGNRGATAVGRWLPAAAAAGGVGGAIGRYETDRVDISFAPHGEAYAAARKHRVPDLSGLAHLVGVTGGWLFDLETLEA 646
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 6.720e-11 Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKD-----VSKEGC-ETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETL-HAMT 312
+ AL+FLP DAAP+A+++TDGV + P YD L M+LCR D + C + P + F +PD+ GLAH+ +GG + DLE L HA+T
Sbjct: 300 QAAAFALKFLPFDAAPLAVVLTDGVGERPSSCAYDSLLMQLCRHDTPVHCIQVGACFAATAPASPADPQSVMPCLPFGF-VPDVEGLAHMCFTTGGEYLDLEALEHALT 407
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: T0QNR9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNR9_SAPDV) HSP 1 Score: 62.4 bits (150), Expect = 5.200e-9 Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKEGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHAM 309
+ AL LP DAAP+ ++VTDGV+D P YD + M+L R ++ C + G + PH S+ +PD + L ++ + +GG FFD+ETL ++
Sbjct: 236 QNATFALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHC-SFGY-----VPDTDLLRYVTAATGGAFFDMETLSSL 327
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A1V9YH17_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH17_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 9.680e-9 Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKEGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHAM 309
+ AL LP DAAP+ ++VTDGV+D P YD + M+L R ++ C + G + PH S+ +PD + L ++ + +GG FFD+ TL A+
Sbjct: 237 QNATFALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHC-SFGY-----VPDTDLLRYVTAATGGAFFDMHTLSAL 328
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A067D4Z2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D4Z2_SAPPC) HSP 1 Score: 61.2 bits (147), Expect = 1.320e-8 Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKEGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHAM 309
+ AL LP DAAP+ ++VTDGV+D P YD + M+L R ++ C + G + PH S+ +PD + L ++ + +GG FFD++TL ++
Sbjct: 234 QNATFALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHC-SFGY-----VPDTDLLRYVTAATGGAFFDMQTLSSL 325 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107543.621.1 >prot_H-elongata_contig107543.621.1 ID=prot_H-elongata_contig107543.621.1|Name=mRNA_H-elongata_contig107543.621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp MSEGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKback to top mRNA from alignment at H-elongata_contig107543:443..844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107543.621.1 ID=mRNA_H-elongata_contig107543.621.1|Name=mRNA_H-elongata_contig107543.621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig107543:443..844- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107543:443..844- >mRNA_H-elongata_contig107543.621.1 ID=mRNA_H-elongata_contig107543.621.1|Name=mRNA_H-elongata_contig107543.621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig107543:443..844- (Himanthalia elongata Himel1 dioecious)back to top |