mRNA_H-elongata_contig107543.621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107543.621.1
Unique NamemRNA_H-elongata_contig107543.621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.510e-27
Identity = 68/164 (41.46%), Postives = 82/164 (50.00%), Query Frame = 1
Query:    1 MSEGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVS---------------------------------------KEGC-----------------------ETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHA 306
            M++ I LAL+FLPLDAAP+AL+VTDG++DYP PTEYDGLSMRLCR DV+                                         G                        ETDR    + PH  +YA ARK R+PDL+GLAHL  V+GG+ FDLETL A
Sbjct:  490 MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDVAVSCLLMDRMGERADVGVXXXXXXXXXATTASSVAVLPSGNRGATAVGRWLPAAAAAGGVGGAMGRYETDRVDISFAPHGEAYAAARKHRVPDLSGLAHLVGVTGGWLFDLETLEA 653          
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.630e-27
Identity = 68/165 (41.21%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 MSEGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVS----------------------------------------KEGC-----------------------ETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHA 306
            M++ I LAL+FLPLDAAP+AL+VTDG++DYP PTEYDGLSMRLCR DV+                                          G                        ETDR    + PH  +YA ARK R+PDL+GLAHL  V+GG+ FDLETL A
Sbjct:  482 MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDVAVSCLLMDRMGERADVGVGGGVXXXXXXXXXXSSVAVLPSGNRGATAVGRWLPAAAAAGGVGGAIGRYETDRVDISFAPHGEAYAAARKHRVPDLSGLAHLVGVTGGWLFDLETLEA 646          
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.720e-11
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKD-----VSKEGC-ETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETL-HAMT 312
            +    AL+FLP DAAP+A+++TDGV + P    YD L M+LCR D     +    C       +   P      +   F +PD+ GLAH+   +GG + DLE L HA+T
Sbjct:  300 QAAAFALKFLPFDAAPLAVVLTDGVGERPSSCAYDSLLMQLCRHDTPVHCIQVGACFAATAPASPADPQSVMPCLPFGF-VPDVEGLAHMCFTTGGEYLDLEALEHALT 407          
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: T0QNR9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNR9_SAPDV)

HSP 1 Score: 62.4 bits (150), Expect = 5.200e-9
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKEGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHAM 309
            +    AL  LP DAAP+ ++VTDGV+D P    YD + M+L R  ++   C   + G  + PH  S+       +PD + L ++ + +GG FFD+ETL ++
Sbjct:  236 QNATFALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHC-SFGY-----VPDTDLLRYVTAATGGAFFDMETLSSL 327          
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A1V9YH17_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH17_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.680e-9
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKEGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHAM 309
            +    AL  LP DAAP+ ++VTDGV+D P    YD + M+L R  ++   C   + G  + PH  S+       +PD + L ++ + +GG FFD+ TL A+
Sbjct:  237 QNATFALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHC-SFGY-----VPDTDLLRYVTAATGGAFFDMHTLSAL 328          
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Match: A0A067D4Z2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D4Z2_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 1.320e-8
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    7 EGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSKEGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETLHAM 309
            +    AL  LP DAAP+ ++VTDGV+D P    YD + M+L R  ++   C   + G  + PH  S+       +PD + L ++ + +GG FFD++TL ++
Sbjct:  234 QNATFALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHC-SFGY-----VPDTDLLRYVTAATGGAFFDMQTLSSL 325          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107543.621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHK8_ECTSI5.510e-2741.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE7.630e-2741.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7M7_9STRA6.720e-1137.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
T0QNR9_SAPDV5.200e-935.64Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9YH17_9STRA9.680e-935.64Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067D4Z2_SAPPC1.320e-834.65Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107543contigH-elongata_contig107543:443..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog112098.XP_008607036.1
EggNOG free text desc.regulation of superoxide dismutase activity
EggNOG OGs2BY2G@1,2QPW4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.213312-CDS-H-elongata_contig107543:442..6251622929605.213312-CDS-H-elongata_contig107543:442..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107543 443..625 -
1691679088.476923-CDS-H-elongata_contig107543:442..6251691679088.476923-CDS-H-elongata_contig107543:442..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107543 443..625 -
1622929605.277667-CDS-H-elongata_contig107543:697..8441622929605.277667-CDS-H-elongata_contig107543:697..844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107543 698..844 -
1691679088.488231-CDS-H-elongata_contig107543:697..8441691679088.488231-CDS-H-elongata_contig107543:697..844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107543 698..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107543.621.1prot_H-elongata_contig107543.621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107543 443..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107543.621.1

>prot_H-elongata_contig107543.621.1 ID=prot_H-elongata_contig107543.621.1|Name=mRNA_H-elongata_contig107543.621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MSEGIELALEFLPLDAAPMALIVTDGVMDYPPPTEYDGLSMRLCRKDVSK
EGCETDRRGTDYRPHDGSYAMARKFRIPDLNGLAHLASVSGGYFFDLETL
HAMTVTDDGP
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mRNA from alignment at H-elongata_contig107543:443..844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107543.621.1 ID=mRNA_H-elongata_contig107543.621.1|Name=mRNA_H-elongata_contig107543.621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig107543:443..844- (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGGGCATCGAGCTGGCGCTGGAGTTTCTGCCCCTGGACGCGGC GCCGATGGCCCTGATCGTCACCGACGGGGTCATGGACTACCCGCCCCCGA CGGAGTACGACGGCCTCTCAATGCGACTCTGCCGTAAGGACGTGTCGGTA TCATGCGTGGTGGTTGACCGGGTCGGGGCGAGCACGCTGGGAAAGATCGG GGTGTCCGCCTCGGGGAAGAAAGAAGGCTGCGAGACGGATCGCCGTGGCA CGGACTATCGACCCCACGACGGTAGCTACGCCATGGCGCGTAAATTCCGC ATCCCGGACCTGAACGGCCTCGCCCACCTGGCGAGCGTCAGCGGAGGGTA TTTTTTCGATCTGGAAACCCTTCACGCGATGACCGTCACGGATGATGGCC CA
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Coding sequence (CDS) from alignment at H-elongata_contig107543:443..844-

>mRNA_H-elongata_contig107543.621.1 ID=mRNA_H-elongata_contig107543.621.1|Name=mRNA_H-elongata_contig107543.621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig107543:443..844- (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGGGCATCGAGCTGGCGCTGGAGTTTCTGCCCCTGGACGCGGC
GCCGATGGCCCTGATCGTCACCGACGGGGTCATGGACTACCCGCCCCCGA
CGGAGTACGACGGCCTCTCAATGCGACTCTGCCGTAAGGACGTGTCGATG
TCGGAGGGCATCGAGCTGGCGCTGGAGTTTCTGCCCCTGGACGCGGCGCC
GATGGCCCTGATCGTCACCGACGGGGTCATGGACTACCCGCCCCCGACGG
AGTACGACGGCCTCTCAATGCGACTCTGCCGTAAGGACGTGTCGAAAGAA
GGCTGCGAGACGGATCGCCGTGGCACGGACTATCGACCCCACGACGGTAG
CTACGCCATGGCGCGTAAATTCCGCATCCCGGACCTGAACGGCCTCGCCC
ACCTGGCGAGCGTCAGCGGAGGGTATTTTTTCGATCTGGAAACCCTTCAC
GCGATGACCGTCACGGATGATGGCCCAAAAGAAGGCTGCGAGACGGATCG
CCGTGGCACGGACTATCGACCCCACGACGGTAGCTACGCCATGGCGCGTA
AATTCCGCATCCCGGACCTGAACGGCCTCGCCCACCTGGCGAGCGTCAGC
GGAGGGTATTTTTTCGATCTGGAAACCCTTCACGCGATGACCGTCACGGA
TGATGGCCCA
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