mRNA_H-elongata_contig107138.590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107138.590.1
Unique NamemRNA_H-elongata_contig107138.590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: D7FSE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 8.000e-45
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1
Query:   10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNEVGL 327
            P LFLVIANISKR NI SLI SAVAF AE+L+ VGQPKF++ETHAP+ L  G+   RF+DLPSCRD+VH++GG+LIG+EI  GARNID+EPF GTCAFM GNE  +
Sbjct:   13 PVLFLVIANISKRCNIRSLIASAVAFQAEILI-VGQPKFSIETHAPRGLPPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEASI 117          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A6H5KWR0_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.010e-28
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 1
Query:  106 AVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
            AVGQPKF++ETHAP+ L  G+   RF+DLPSCRD+VH++GG+LIG+EI  GARNID+EPF GTCAFM GNE
Sbjct:   39 AVGQPKFSIETHAPRGLPPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNE 109          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A7S2H1E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1E1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.480e-18
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   19 FLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALAS-------GLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPF 285
            +LVI N++K+ NI +LI+SA AFG +V++ VGQPKF LETHAP  +         G ++ R A+L  C  F++A+  +L GIEIV GA +I+   F
Sbjct:    4 YLVITNVAKKQNIRNLISSAFAFGIDVVLIVGQPKFELETHAPPGIVELMASGSVGFSIVRLANLGDCVHFLNARKATLYGIEIVDGASSIENINF 99          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: G5A0Y2_PHYSP (SpoU_methylase domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G5A0Y2_PHYSP)

HSP 1 Score: 84.0 bits (206), Expect = 2.570e-18
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
            PR FL++ N+ K  NI +++ SA AFG E +  VGQ KF L+   P   +    V R A L  CR     +G  ++G+EI+H A++I  +PF G  AF++GNE
Sbjct:    1 PRHFLILNNVQKNKNIKNMLVSASAFGVEEVFVVGQKKFDLQEQEPFLRSLSCRVTRLATLKDCRAHCTERGIRIVGVEIMHDAKSIADQPFSGDTAFIMGNE 103          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A484EHL7_BRELC (SpoU_methylase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHL7_BRELC)

HSP 1 Score: 82.0 bits (201), Expect = 2.950e-17
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNEVG 324
            PR +L++ N+ K  N+ +++ SA AFG + +  VGQ KF L+  A    +      R A L  CR   + +   +IG+EI+H A++I +EPF G  AF++GNEVG
Sbjct:   15 PRHYLILNNVQKIKNVKNMLMSASAFGVKEVFVVGQKKFDLQEQASFLNSLSCRTTRVATLKDCRALCNERSIQIIGVEIMHDAKSIVEEPFNGDTAFIMGNEVG 119          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A7S1C439_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C439_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.870e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
            P L+++++N+SK+ NI +L+ SA AFGA  ++ VG PKF+L           +  E+ A L      +  +G S++G+EI+ GAR + + PF G+CAFMLGNE
Sbjct:   55 PELYVLLSNVSKKQNIGNLVRSASAFGASGILVVGSPKFSL--FGSHGSGRHINFEKHAKLEDAAASLRERGVSVVGVEIMPGARPVHEHPFTGSCAFMLGNE 155          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: W7UCB5_9STRA (Obp33pep like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCB5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.560e-13
Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLA-------------VERF-ADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPF-----------RGTCAFMLGNE 318
            PRL L++ +ISKR N+ +L+TSA AFGAEVLV VGQP F   +H P+ LA  L                RF   L  CRD +  +   + G+EI   A N+++ P+           RG  A +LGNE
Sbjct:   34 PRLLLLLHHISKRQNVRTLLTSAAAFGAEVLV-VGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNE 160          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A7S0BWV2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWV2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.880e-11
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETH---APKALAS-----GLAVERFADLPSCRDFV-HAKGGSLIGIEIVHGARNIDQEPFR------GTCAFMLGNE 318
            P+L+L+IANISK SNI  L+ S+ AFG   +   GQ KF  + +    P++L +      L + +F  L  C   V H  G  + G+EIV  A+++  +PF       G  A M+GNE
Sbjct:   20 PKLYLIIANISKPSNIKKLLLSSFAFGCRTVFVAGQKKFDFDGNNNDLPQSLLNLPPNDRLKIVQFEKLSDCIHHVKHVMGARVCGVEIVEDAQDVQNDPFEINSDGNGDTAIMMGNE 137          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A485L0U4_9STRA (Aste57867_14514 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0U4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.220e-10
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   16 LFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFA------LETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNI-DQEPFRGTCAFMLGNE 318
            ++L+I NI KR NI  ++ SA AFG   +  VG    +      +E   P        + RFA L  CRD + A G ++IGIEI+H A+++ D + F G  A M+GNE
Sbjct:   33 MYLIINNIQKRKNIRDMLLSASAFGVVEVFVVGHKLLSFDQALNVEDVLPD-FVFPFRITRFATLVECRDHLKALGVTIIGIEILHNAKSVNDPDVFAGPTALMVGNE 139          
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A8J4FB88_9CHLO (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FB88_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.090e-9
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    4 SHPRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSC-RDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
            S P  F++  ++SKR NI +++ SA AFG + +  VG  +F   T       + +A++ F  L  C +     +G  ++GIEI  GA  + + PF G  AF+LGNE
Sbjct:   19 SSPPCFIITHSVSKRHNIGTILRSATAFGVKEVCLVGSRQF--NTFGSHGSDAHVALKHFHTLQQCVQHLKDVEGCRVLGIEICEGALPVQEHPFTGATAFLLGNE 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FSE6_ECTSI8.000e-4569.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWR0_9PHAE1.010e-2870.42SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A7S2H1E1_9STRA2.480e-1845.83Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
G5A0Y2_PHYSP2.570e-1840.78SpoU_methylase domain-containing protein (Fragment... [more]
A0A484EHL7_BRELC2.950e-1739.05SpoU_methylase domain-containing protein n=1 Tax=B... [more]
A0A7S1C439_9STRA6.870e-1740.78Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W7UCB5_9STRA2.560e-1339.06Obp33pep like protein n=1 Tax=Nannochloropsis gadi... [more]
A0A7S0BWV2_9STRA3.880e-1136.44Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A485L0U4_9STRA1.220e-1037.96Aste57867_14514 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J4FB88_9CHLO1.090e-934.91SpoU_methylase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107138contigH-elongata_contig107138:387..1364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.5e-34
Seed eggNOG ortholog2880.D7FSE6
EggNOG free text desc.rRNA methyltransferase
EggNOG OGsCOG0566@1,KOG0838@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA (guanine-N1-)-methyltransferase, N-terminal
Ec32 orthologEc-25_000890.1
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.895582-CDS-H-elongata_contig107138:386..6071622929601.895582-CDS-H-elongata_contig107138:386..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107138 387..607 -
1691679087.0749645-CDS-H-elongata_contig107138:386..6071691679087.0749645-CDS-H-elongata_contig107138:386..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107138 387..607 -
1622929601.909988-CDS-H-elongata_contig107138:1258..13641622929601.909988-CDS-H-elongata_contig107138:1258..1364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107138 1259..1364 -
1691679087.0904114-CDS-H-elongata_contig107138:1258..13641691679087.0904114-CDS-H-elongata_contig107138:1258..1364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107138 1259..1364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107138.590.1prot_H-elongata_contig107138.590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107138 387..1364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107138.590.1

>prot_H-elongata_contig107138.590.1 ID=prot_H-elongata_contig107138.590.1|Name=mRNA_H-elongata_contig107138.590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MSHPRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPK
ALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCA
FMLGNEVGL
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mRNA from alignment at H-elongata_contig107138:387..1364-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107138.590.1 ID=mRNA_H-elongata_contig107138.590.1|Name=mRNA_H-elongata_contig107138.590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=978bp|location=Sequence derived from alignment at H-elongata_contig107138:387..1364- (Himanthalia elongata Himel1 dioecious)
ATGAGCCACCCCCGACTGTTCTTGGTAATCGCCAACATCTCGAAGCGCTC CAACATCCACTCGCTCATAACGTCGGCTGTCGCGTTCGGGGCAGAGGTCC TGGTGGGTGAGACGAACCAACGAGTGACAACGATTCAATATATATATATA TATATATATATATATATATATATATATATAAACACGCACACATACACACA CACACGAAAAACTGCTGCACTGAGTGCCTATACGTATTTATGGCTCCCTA CCAACAACTCCCATTGCCCCGCCGTTTGATCGTCTTGCCGTATTGTCTTG CCGTATTGTCTTGCCGTATCGTTTACGCCAACTATTAATAATATAACCAC CGTGGTGCTGTAGTACTGTAACTCCATAGGGCGGACGGAAGAGCTTATTT CCTCGATTCCAACCAAATATTTCGAATTTTCCTAGTTGCTAAACAACTAA TATGCTCCAAACATGATTGGACATCGCTGCTTGCTACGCACACCAACCGT CCCAGACGCGCATCATATCTATCGAAACCCCTCCGCGAAGTCGTGGTGGG AGTTCCACTCTAGCCGGACACAAGTTAACAGGTTGACAGTGCGTCAAGGC GTCTTTTTGAAAATATACTATTTTTAGTATGGGGACGTGTCCTTGACGCG TCTGTCAAGGAGTTCAACTCTCGTCAACCGACAACTTTACTGTACATCAA TTGTTTTGAAATACTTGGTAACCGACGCTGGCCTACGCCTTTTTCGCCCT CACGAAGCAGTCGGACAGCCGAAGTTCGCCCTCGAGACTCACGCACCCAA AGCCCTGGCCTCGGGCCTCGCGGTGGAACGATTTGCCGACCTTCCATCGT GTCGGGATTTCGTCCACGCAAAGGGAGGAAGCTTGATCGGCATTGAGATC GTGCACGGCGCGAGGAACATCGACCAAGAGCCCTTCCGTGGAACGTGCGC CTTCATGCTCGGGAACGAAGTAGGTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig107138:387..1364-

>mRNA_H-elongata_contig107138.590.1 ID=mRNA_H-elongata_contig107138.590.1|Name=mRNA_H-elongata_contig107138.590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig107138:387..1364- (Himanthalia elongata Himel1 dioecious)
ATGAGCCACCCCCGACTGTTCTTGGTAATCGCCAACATCTCGAAGCGCTC
CAACATCCACTCGCTCATAACGTCGGCTGTCGCGTTCGGGGCAGAGGTCC
TGGTGGATGAGCCACCCCCGACTGTTCTTGGTAATCGCCAACATCTCGAA
GCGCTCCAACATCCACTCGCTCATAACGTCGGCTGTCGCGTTCGGGGCAG
AGGTCCTGGTGGCAGTCGGACAGCCGAAGTTCGCCCTCGAGACTCACGCA
CCCAAAGCCCTGGCCTCGGGCCTCGCGGTGGAACGATTTGCCGACCTTCC
ATCGTGTCGGGATTTCGTCCACGCAAAGGGAGGAAGCTTGATCGGCATTG
AGATCGTGCACGGCGCGAGGAACATCGACCAAGAGCCCTTCCGTGGAACG
TGCGCCTTCATGCTCGGGAACGAAGTAGGTCTACAGTCGGACAGCCGAAG
TTCGCCCTCGAGACTCACGCACCCAAAGCCCTGGCCTCGGGCCTCGCGGT
GGAACGATTTGCCGACCTTCCATCGTGTCGGGATTTCGTCCACGCAAAGG
GAGGAAGCTTGATCGGCATTGAGATCGTGCACGGCGCGAGGAACATCGAC
CAAGAGCCCTTCCGTGGAACGTGCGCCTTCATGCTCGGGAACGAAGTAGG
TCTA
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