mRNA_H-elongata_contig107138.590.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: D7FSE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE6_ECTSI) HSP 1 Score: 150 bits (378), Expect = 8.000e-45 Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1
Query: 10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNEVGL 327
P LFLVIANISKR NI SLI SAVAF AE+L+ VGQPKF++ETHAP+ L G+ RF+DLPSCRD+VH++GG+LIG+EI GARNID+EPF GTCAFM GNE +
Sbjct: 13 PVLFLVIANISKRCNIRSLIASAVAFQAEILI-VGQPKFSIETHAPRGLPPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEASI 117
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A6H5KWR0_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR0_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.010e-28 Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 106 AVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
AVGQPKF++ETHAP+ L G+ RF+DLPSCRD+VH++GG+LIG+EI GARNID+EPF GTCAFM GNE
Sbjct: 39 AVGQPKFSIETHAPRGLPPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNE 109
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A7S2H1E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1E1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.480e-18 Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 19 FLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALAS-------GLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPF 285
+LVI N++K+ NI +LI+SA AFG +V++ VGQPKF LETHAP + G ++ R A+L C F++A+ +L GIEIV GA +I+ F
Sbjct: 4 YLVITNVAKKQNIRNLISSAFAFGIDVVLIVGQPKFELETHAPPGIVELMASGSVGFSIVRLANLGDCVHFLNARKATLYGIEIVDGASSIENINF 99
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: G5A0Y2_PHYSP (SpoU_methylase domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G5A0Y2_PHYSP) HSP 1 Score: 84.0 bits (206), Expect = 2.570e-18 Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
PR FL++ N+ K NI +++ SA AFG E + VGQ KF L+ P + V R A L CR +G ++G+EI+H A++I +PF G AF++GNE
Sbjct: 1 PRHFLILNNVQKNKNIKNMLVSASAFGVEEVFVVGQKKFDLQEQEPFLRSLSCRVTRLATLKDCRAHCTERGIRIVGVEIMHDAKSIADQPFSGDTAFIMGNE 103
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A484EHL7_BRELC (SpoU_methylase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHL7_BRELC) HSP 1 Score: 82.0 bits (201), Expect = 2.950e-17 Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNEVG 324
PR +L++ N+ K N+ +++ SA AFG + + VGQ KF L+ A + R A L CR + + +IG+EI+H A++I +EPF G AF++GNEVG
Sbjct: 15 PRHYLILNNVQKIKNVKNMLMSASAFGVKEVFVVGQKKFDLQEQASFLNSLSCRTTRVATLKDCRALCNERSIQIIGVEIMHDAKSIVEEPFNGDTAFIMGNEVG 119
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A7S1C439_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C439_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.870e-17 Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
P L+++++N+SK+ NI +L+ SA AFGA ++ VG PKF+L + E+ A L + +G S++G+EI+ GAR + + PF G+CAFMLGNE
Sbjct: 55 PELYVLLSNVSKKQNIGNLVRSASAFGASGILVVGSPKFSL--FGSHGSGRHINFEKHAKLEDAAASLRERGVSVVGVEIMPGARPVHEHPFTGSCAFMLGNE 155
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: W7UCB5_9STRA (Obp33pep like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCB5_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.560e-13 Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 1
Query: 10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLA-------------VERF-ADLPSCRDFVHAKGGSLIGIEIVHGARNIDQEPF-----------RGTCAFMLGNE 318
PRL L++ +ISKR N+ +L+TSA AFGAEVLV VGQP F +H P+ LA L RF L CRD + + + G+EI A N+++ P+ RG A +LGNE
Sbjct: 34 PRLLLLLHHISKRQNVRTLLTSAAAFGAEVLV-VGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNE 160
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A7S0BWV2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWV2_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.880e-11 Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query: 10 PRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETH---APKALAS-----GLAVERFADLPSCRDFV-HAKGGSLIGIEIVHGARNIDQEPFR------GTCAFMLGNE 318
P+L+L+IANISK SNI L+ S+ AFG + GQ KF + + P++L + L + +F L C V H G + G+EIV A+++ +PF G A M+GNE
Sbjct: 20 PKLYLIIANISKPSNIKKLLLSSFAFGCRTVFVAGQKKFDFDGNNNDLPQSLLNLPPNDRLKIVQFEKLSDCIHHVKHVMGARVCGVEIVEDAQDVQNDPFEINSDGNGDTAIMMGNE 137
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A485L0U4_9STRA (Aste57867_14514 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0U4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.220e-10 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 16 LFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFA------LETHAPKALASGLAVERFADLPSCRDFVHAKGGSLIGIEIVHGARNI-DQEPFRGTCAFMLGNE 318
++L+I NI KR NI ++ SA AFG + VG + +E P + RFA L CRD + A G ++IGIEI+H A+++ D + F G A M+GNE
Sbjct: 33 MYLIINNIQKRKNIRDMLLSASAFGVVEVFVVGHKLLSFDQALNVEDVLPD-FVFPFRITRFATLVECRDHLKALGVTIIGIEILHNAKSVNDPDVFAGPTALMVGNE 139
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Match: A0A8J4FB88_9CHLO (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FB88_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 1.090e-9 Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 4 SHPRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKALASGLAVERFADLPSC-RDFVHAKGGSLIGIEIVHGARNIDQEPFRGTCAFMLGNE 318
S P F++ ++SKR NI +++ SA AFG + + VG +F T + +A++ F L C + +G ++GIEI GA + + PF G AF+LGNE
Sbjct: 19 SSPPCFIITHSVSKRHNIGTILRSATAFGVKEVCLVGSRQF--NTFGSHGSDAHVALKHFHTLQQCVQHLKDVEGCRVLGIEICEGALPVQEHPFTGATAFLLGNE 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107138.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107138.590.1 >prot_H-elongata_contig107138.590.1 ID=prot_H-elongata_contig107138.590.1|Name=mRNA_H-elongata_contig107138.590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MSHPRLFLVIANISKRSNIHSLITSAVAFGAEVLVAVGQPKFALETHAPKback to top mRNA from alignment at H-elongata_contig107138:387..1364- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107138.590.1 ID=mRNA_H-elongata_contig107138.590.1|Name=mRNA_H-elongata_contig107138.590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=978bp|location=Sequence derived from alignment at H-elongata_contig107138:387..1364- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107138:387..1364- >mRNA_H-elongata_contig107138.590.1 ID=mRNA_H-elongata_contig107138.590.1|Name=mRNA_H-elongata_contig107138.590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig107138:387..1364- (Himanthalia elongata Himel1 dioecious)back to top |