mRNA_H-elongata_contig106788.557.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A6H5KP90_9PHAE (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP90_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.570e-33 Identity = 95/266 (35.71%), Postives = 113/266 (42.48%), Query Frame = 1
Query: 22 GVTYPTNRVKDCYTRALKERGLTEACFSSSSQKVFSLGGMYRRCLDPQVPTAMVRCSPQFAVKNMSSCCRCPRNGFVAMNASFPPRMHDASSRGFYRLIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAG-----------------------------------------------------SGLKLAGSS----------------------------GRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSLN 576
GVTYPTN VK+CYT+AL+ERG+TEACFSSS+QK F LGG YRR L+Q+PKDM WE+K YD+HTLHLINTDIDDLLDI+DA+IA S K G S GR+ LCL FTLPS+SYATMC+RE+T+QDT T + +SLN
Sbjct: 786 GVTYPTNGVKECYTKALEERGVTEACFSSSTQKAFKLGGAYRR------------------------------------------------------LLQVPKDMQWELKRYDDHTLHLINTDIDDLLDIDDARIAKEDAERKXXXXXXXXXXXXADPSSXXXXXXXXXXXXXXXXDPAAAEADVEKQPPSTKKEEGDSKATTPDAMDVDGAAPESKCEASPPGSRGGRFHGLCLHFTLPSSSYATMCLREVTQQDTSTIYHTSLN 997
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A162NNX6_9CRUS (Pseudouridylate synthase 7 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A162NNX6_9CRUS) HSP 1 Score: 72.0 bits (175), Expect = 3.480e-11 Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 301 GFYRLIQM-PKDMTWEMKLYDNHTLHLINTDIDDL----LDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSLNPPGSTQQPSMA 609
G YRL+ P D+ W+ YD+ TL LI +D D L L + D K G Y L L+F+LP++SYATM +REITK D + FQ+SLN GST+ P+ A
Sbjct: 585 GAYRLVMSKPSDVKWKFARYDDPTLSLIPSDWDRLQKTQLPLADVK-----------DGVYLGLILEFSLPASSYATMALREITKMDMSSEFQTSLNEAGSTKHPAPA 681
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A6P8SK60_GEOSA (pseudouridylate synthase 7 homolog isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SK60_GEOSA) HSP 1 Score: 65.5 bits (158), Expect = 5.890e-9 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 277 RMHDASSRGFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSLN 576
++ D S G YR +I P++++WE+ +Y++ + L+ TD+D K+ L + G+Y AL L+F+LP ++YATM IRE+ K DT Q+ LN
Sbjct: 550 KIRDYSLAGAYRKIIIRPQNVSWELVVYEDPKVPLVQTDVD--------KLERKPLPVFAKEGKYQALKLEFSLPPSTYATMAIREVLKMDTSIKNQTRLN 642
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A067R2F7_ZOONE (Pseudouridylate synthase 7-like protein n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067R2F7_ZOONE) HSP 1 Score: 65.5 bits (158), Expect = 6.390e-9 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 304 FYRLIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSLN 576
+ R+I P+++TW+ Y + T LI +D+D+L ++ + K GL Y AL L F LPSA+YATM +REI K DT + Q+SLN
Sbjct: 808 YRRMIVRPENLTWKTMQYSSLTSTLIQSDLDELKNVPEPKDDPEGL--------YKALILDFCLPSATYATMALREILKVDTSSIHQASLN 890
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A067TMS5_GALM3 (TRUD domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067TMS5_GALM3) HSP 1 Score: 63.9 bits (154), Expect = 2.100e-8 Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 265 SFPPRMHDASSRGFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSL 573
+F + D + G YR +I +PKD++W + Y + + L +D D LL + + S G++ AL + TL +A+YATM +REITK DT + FQ+SL
Sbjct: 728 NFVRKQKDYTLGGSYRAMIHLPKDLSWSVLRYTDPDVSLAQSDEDKLLGFDSPAVV--------SDGKFMALQINITLGTAAYATMALREITKTDTSSHFQTSL 823
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: N6TL72_DENPD (TRUD domain-containing protein (Fragment) n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TL72_DENPD) HSP 1 Score: 63.2 bits (152), Expect = 3.730e-8 Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 301 GFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSLN 576
G YR ++Q KD+ W++ Y++ T +LI +D+++L +++ + + G+Y A+ L F+LPSA YATM +REI K +T TS Q+ LN
Sbjct: 559 GTYRKIVQHVKDLEWKILCYNDPTDNLIRSDLEELSGVKEPETI--------AEGQYKAIVLSFSLPSACYATMVLREILKCNTSTSSQAGLN 643
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A0D2LPZ5_HYPSF (TRUD domain-containing protein n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2LPZ5_HYPSF) HSP 1 Score: 62.4 bits (150), Expect = 7.060e-8 Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 265 SFPPRMHDASSRGFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSL 573
+F + D + G YR ++ PK+M+W + Y + + L +D D LLD + + G++ AL + TL +A+YATM +REITK DT + FQ+SL
Sbjct: 720 NFVRKQKDYTLNGSYRAMLHHPKEMSWSVLRYTDPDVSLAQSDEDKLLDFDPPAVV--------EDGKFMALQIHLTLGTAAYATMALREITKTDTSSHFQTSL 815
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: W4KF10_HETIT (TRUD domain-containing protein n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4KF10_HETIT) HSP 1 Score: 62.0 bits (149), Expect = 9.630e-8 Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1
Query: 265 SFPPRMHDASSRGFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSLNPPGSTQQ 597
+F R D S G YR ++ +P++++W++ Y + + L +D D LL + I GR+ AL ++ TL +A+YATM +RE+TK +T + FQSSL QQ
Sbjct: 764 NFNRRQKDYSLSGSYRNIMHLPRELSWDVLRYTDPDVPLAQSDEDKLLGYDAPAIV--------PDGRFLALQIRLTLGTAAYATMALREVTKTETSSHFQSSLTQASQDQQ 867
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: B4LFS9_DROVI (TRUD domain-containing protein n=2 Tax=virilis group TaxID=32335 RepID=B4LFS9_DROVI) HSP 1 Score: 61.2 bits (147), Expect = 1.670e-7 Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 301 GFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSL 573
G YR L+ D+ W + Y H LI +D + L +IE + A S G YTAL L+FTLP+A YATM +RE+ KQDT T+ Q L
Sbjct: 576 GAYRKLLIQTDDLKWSFRRYSTHEDTLIASDWEQLKNIEVTP------EPAESEGEYTALLLEFTLPTAVYATMFLRELFKQDTSTASQMQL 661
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Match: A0A166VPZ6_9AGAM (tRNA pseudouridine synthase D n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166VPZ6_9AGAM) HSP 1 Score: 61.2 bits (147), Expect = 1.750e-7 Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 265 SFPPRMHDASSRGFYR-LIQMPKDMTWEMKLYDNHTLHLINTDIDDLLDIEDAKIAGSGLKLAGSSGRYTALCLKFTLPSASYATMCIREITKQDTGTSFQSSL 573
+F + + + G YR ++Q+PKD++W + Y + + L D D LL + +A G++ AL ++ TL +A+YATM +RE+TK DT + FQS+L
Sbjct: 744 NFVRKQKEYTLGGSYRKIMQLPKDLSWSVLRYTDPDVPLAQADEDKLLGFDAPVLA--------EDGKFMALQIRLTLNTAAYATMALREVTKTDTSSHFQSNL 839 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106788.557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106788.557.1 >prot_H-elongata_contig106788.557.1 ID=prot_H-elongata_contig106788.557.1|Name=mRNA_H-elongata_contig106788.557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp LCVLSRFGVTYPTNRVKDCYTRALKERGLTEACFSSSSQKVFSLGGMYRRback to top mRNA from alignment at H-elongata_contig106788:219..1091+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106788.557.1 ID=mRNA_H-elongata_contig106788.557.1|Name=mRNA_H-elongata_contig106788.557.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig106788:219..1091+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106788:219..1091+ >mRNA_H-elongata_contig106788.557.1 ID=mRNA_H-elongata_contig106788.557.1|Name=mRNA_H-elongata_contig106788.557.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig106788:219..1091+ (Himanthalia elongata Himel1 dioecious)back to top |