mRNA_H-elongata_contig105688.471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105688.471.1
Unique NamemRNA_H-elongata_contig105688.471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 7.490e-81
Identity = 133/187 (71.12%), Postives = 152/187 (81.28%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPS-----TAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF 573
            YAENTASSLLYLSLE+AG+RAG+GPG A LGHAAGHVGKA GIC  LR+LA P      ++G    A +CVLP DVMR+ +LRH VLERGP+   E+HALAECVF VASVAKGH+EA+EE LAAAR ETGGKLP GAFAALLPG+R AWYLETLQ C F+AFDE LRP+SP  FQ RL +A++TEKF
Sbjct:  137 YAENTASSLLYLSLELAGVRAGAGPGAAALGHAAGHVGKAAGICTLLRSLALPPPPAALSSGSIGFAESCVLPSDVMRRFLLRHAVLERGPQDDKEAHALAECVFAVASVAKGHIEAAEEGLAAAREETGGKLPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAVITEKF 323          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.550e-39
Identity = 91/182 (50.00%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF 573
            YAE+TASSLLYLSLE AG+            HAAGH+GKAVGIC  LRA+   S           VLP  ++RK+++   VL  G R+  E+ ALA C +DVA VAKGHME  +E      + +G  L   AF ALLPG+RAAWYLE L+K  F+AFD  L PRS + FQ+R+A+A +T KF
Sbjct:  164 YAEHTASSLLYLSLEAAGVA------DERAEHAAGHIGKAVGICTLLRAVQHHSA------QKLSVLPGQLLRKHLVASTVLFNGARTEAEAEALAACFYDVACVAKGHMEQGQE------LASG--LSNDAFRALLPGVRAAWYLEALEKAGFNAFDASLTPRSWIPFQFRVARAAMTHKF 325          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.060e-25
Identity = 72/173 (41.62%), Postives = 97/173 (56.07%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRL 546
            YAENTASSLLYL+LE   +R        T  HAA HVG+A GI   LRA    +         +  +P+++ R+  +    + RGP SP+ + AL++  F+VA+ A  HME + E LA+    + G L R    ALLP +R   YL+ LQK  F+A D+ L PRS L FQ RL
Sbjct:  146 YAENTASSLLYLTLEALHVR------HPTADHAASHVGRATGIATVLRATKFHAA------HQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLSRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRL 306          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A0U9HJ73_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HJ73_KLENI)

HSP 1 Score: 82.4 bits (202), Expect = 2.610e-15
Identity = 63/162 (38.89%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   25 SYAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGL 510
            SYAE+TAS +LYL+LE AGI+           HAA H+GKA G+   LRA    S      +     LP+DV  K    HGV+E        S AL   VF+VA  AK H+E ++           G LP  A   LLP +    YL++LQ+ NFD F   L
Sbjct:  164 SYAESTASGILYLTLEAAGIK------NTEADHAASHIGKASGLALLLRATPVHS------LKRRTYLPLDVTGK----HGVVEEDIYQRKSSDALNAAVFEVADAAKAHLEKAQSMR--------GSLPAEALPILLPAIPVGTYLDSLQRHNFDVFSPHL 301          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A2R6XSE0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XSE0_MARPO)

HSP 1 Score: 81.6 bits (200), Expect = 3.440e-15
Identity = 64/161 (39.75%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGL 510
            YAENTAS +LYL+LE AGIR      +    HAA H+GKA GI   LR     +   G R  T   +P+D+  K+ L    + RG        ALA+ V +VAS A  H+     SLA+        +P+GA   LLP + A   L++L+KCNF+ FD  L
Sbjct:  131 YAENTASVILYLTLEAAGIR------STAADHAASHIGKAAGIGLLLRG----TPVHGSRRRT--YIPIDIAAKHGLSQEDIYRG----QNREALADAVHEVASFANAHL-VHARSLAST-------VPKGAVTVLLPAVPAGLLLQSLEKCNFNVFDSKL 267          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A8K1C5K0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K0_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 4.460e-15
Identity = 62/182 (34.07%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF 573
            YA+ TA+SLLYL+LE  G+R G+         AAGH G AVG+   LR                  LP D++ K+ L +   E   + P E   LA  VF+VA +A  H+ AS E            +P+ A  ALL  + ++ YLE L++ NF+ FD  L  RSP+    ++ K     K+
Sbjct:  154 YADKTAASLLYLTLECLGVRDGAAD------RAAGHAGVAVGLTTLLRGTPY------HLAHNQLYLPEDLLLKHDLTNEHFEAASQDPAEGKKLAPVVFEVACLALEHLRASRELTR--------DVPKEARPALLSVVSSSMYLEQLERVNFNVFDPSLMQRSPMQLHLQVLKNYFLRKY 315          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: C3ZBT5_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZBT5_BRAFL)

HSP 1 Score: 79.3 bits (194), Expect = 1.450e-14
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPL 528
            Y+E T SS+LYL+LE+ GI+           HAA H+GKA+GIC +LRA   P  A   RV     LPMDVM    ++ GV +       +   + + ++++AS++  H+E +              +PR A +A LP +    YL+ +QK +F+ FD  L  R  L
Sbjct:   97 YSEQTVSSVLYLTLEILGIK------DVHADHAASHIGKAIGICTALRAA--PYLANRRRV----FLPMDVM----MQFGVSQEDIVRGKQDQKVKDVMYEIASLSHSHLEKARSLKK--------DVPRKAMSAFLPALSCDSYLKKIQKADFNVFDSSLHQRDTL 239          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: D8QXA7_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QXA7_SELML)

HSP 1 Score: 78.6 bits (192), Expect = 4.710e-14
Identity = 64/162 (39.51%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLR 513
            YAE+TAS+LLYL+LE AG+R      +    HAA H GKA GI   L A A  S    +RV   C +P++V  K+ +    L RG R  +    +A  VF+VASVA  H+E   ++ A A+      +PR A   +LP +    +L TL +  FD FD  LR
Sbjct:  131 YAESTASALLYLTLEAAGVR------STKADHAASHTGKAAGISLLLEATAHHSA---KRV---CYIPVEVAVKHGVSQEDLYRGVRGDE---GVARAVFEVASVAHAHLE---KARALAK-----DVPREASPVMLPAVATDEFLATLMRSGFDPFDPRLR 269          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A6P4YWM6_BRABE (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YWM6_BRABE)

HSP 1 Score: 77.0 bits (188), Expect = 1.270e-13
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPL 528
            Y+E T SS+LYL+LE+ GI+           HAA H+GKA+GIC +LRA   P  A   RV     LPMDVM    ++ GV +       +   + + ++++AS++  H+E +              +P+ + +A LP +   +YL+ +QK +F+ FD  L+ R  L
Sbjct:  111 YSEQTVSSVLYLTLEILGIK------DVHADHAASHIGKAIGICTALRAA--PYLANRRRV----FLPMDVM----IQCGVSQEDIVRGRQDQKVKDVMYEIASLSHSHLEKARSLKK--------DVPKKSMSAFLPALSCDFYLKRIQKVDFNIFDSSLQQRDTL 253          
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: B9N3P4_POPTR (Uncharacterized protein n=9 Tax=Saliceae TaxID=238069 RepID=B9N3P4_POPTR)

HSP 1 Score: 76.6 bits (187), Expect = 2.590e-13
Identity = 68/181 (37.57%), Postives = 96/181 (53.04%), Query Frame = 1
Query:   28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVL-ERGPRSP---DESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFD----EGLRPRSPLSFQWRL 546
            YAE+T S+LLY++L+  GIR      +    HAA H GKA G+   LR+L  P  A   R    C +P +V  K    HG+L + G R     D   +L   VFD+ASVA  H++ +  SLA       G +P  A + LLP + A  +L+TL + +FD FD     G+   SP+S+Q +L
Sbjct:  134 YAEDTISTLLYMTLQAGGIR------STAADHAASHAGKASGLLLLLRSL--PYHASRNR--HFCYIPTEVAAK----HGLLVKEGGRFEIRLDSRESLCNAVFDMASVANVHLQKAR-SLA-------GTVPTEARSVLLPAVPAQVFLDTLSRVHFDVFDPRLARGVLGISPVSYQLKL 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI4_ECTSI7.490e-8171.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPK2_9STRA2.550e-3950.00Squalene/phytoene synthase-domain-containing prote... [more]
A0A4D9CW87_9STRA4.060e-2541.62Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0U9HJ73_KLENI2.610e-1538.89Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2R6XSE0_MARPO3.440e-1539.75Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A8K1C5K0_PYTOL4.460e-1534.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
C3ZBT5_BRAFL1.450e-1434.13Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
D8QXA7_SELML4.710e-1439.51Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A6P4YWM6_BRABE1.270e-1332.93NADH dehydrogenase (Ubiquinone) complex I, assembl... [more]
B9N3P4_POPTR2.590e-1337.57Uncharacterized protein n=9 Tax=Saliceae TaxID=238... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105688contigH-elongata_contig105688:733..1308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue1.9e-66
Seed eggNOG ortholog2880.D7FSI4
KEGG koko:K18163
KEGG Pathwayko04714,map04714
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsCOG1562@1,KOG4411@2759
Ec32 ortholog descriptionIsoprenoid synthase domain
Ec32 orthologEc-11_003830.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.2789686-CDS-H-elongata_contig105688:732..13081622929590.2789686-CDS-H-elongata_contig105688:732..1308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105688 733..1308 -
1691679081.987887-CDS-H-elongata_contig105688:732..13081691679081.987887-CDS-H-elongata_contig105688:732..1308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105688 733..1308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105688.471.1prot_H-elongata_contig105688.471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105688 733..1308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105688.471.1

>prot_H-elongata_contig105688.471.1 ID=prot_H-elongata_contig105688.471.1|Name=mRNA_H-elongata_contig105688.471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
TCPTIPSTSYAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAV
GICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDE
SHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMR
AAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF*
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mRNA from alignment at H-elongata_contig105688:733..1308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105688.471.1 ID=mRNA_H-elongata_contig105688.471.1|Name=mRNA_H-elongata_contig105688.471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig105688:733..1308- (Himanthalia elongata Himel1 dioecious)
ACTTGTCCCACCATCCCATCTACCAGCTACGCAGAGAACACGGCCTCCTC GCTCTTGTACCTGTCGCTCGAAGTGGCCGGGATACGTGCCGGTTCAGGGC CGGGCACGGCGACCTTGGGACACGCCGCGGGCCACGTGGGGAAGGCGGTA GGAATCTGCGCTTCGCTTAGGGCGCTAGCTCAACCGTCGACCGCCGGGGG GGAAAGGGTCGCAACCACCTGCGTCCTCCCCATGGACGTGATGCGGAAGA ACGTGCTACGCCACGGTGTGCTTGAGCGGGGTCCACGGAGCCCCGACGAA TCGCACGCGCTCGCGGAGTGCGTGTTTGACGTGGCCTCCGTGGCGAAAGG GCACATGGAAGCCTCGGAGGAGTCGCTAGCAGCAGCGCGAATAGAAACGG GTGGAAAACTGCCGAGGGGTGCTTTCGCGGCGCTGCTGCCGGGGATGCGA GCCGCATGGTACCTGGAGACGCTGCAGAAGTGCAACTTCGACGCATTCGA CGAAGGGCTGCGACCACGAAGCCCATTGTCGTTTCAATGGCGACTGGCCA AGGCCATGTTGACCGAGAAGTTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig105688:733..1308-

>mRNA_H-elongata_contig105688.471.1 ID=mRNA_H-elongata_contig105688.471.1|Name=mRNA_H-elongata_contig105688.471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig105688:733..1308- (Himanthalia elongata Himel1 dioecious)
ACTTGTCCCACCATCCCATCTACCAGCTACGCAGAGAACACGGCCTCCTC
GCTCTTGTACCTGTCGCTCGAAGTGGCCGGGATACGTGCCGGTTCAGGGC
CGGGCACGGCGACCTTGGGACACGCCGCGGGCCACGTGGGGAAGGCGGTA
GGAATCTGCGCTTCGCTTAGGGCGCTAGCTCAACCGTCGACCGCCGGGGG
GGAAAGGGTCGCAACCACCTGCGTCCTCCCCATGGACGTGATGCGGAAGA
ACGTGCTACGCCACGGTGTGCTTGAGCGGGGTCCACGGAGCCCCGACGAA
TCGCACGCGCTCGCGGAGTGCGTGTTTGACGTGGCCTCCGTGGCGAAAGG
GCACATGGAAGCCTCGGAGGAGTCGCTAGCAGCAGCGCGAATAGAAACGG
GTGGAAAACTGCCGAGGGGTGCTTTCGCGGCGCTGCTGCCGGGGATGCGA
GCCGCATGGTACCTGGAGACGCTGCAGAAGTGCAACTTCGACGCATTCGA
CGAAGGGCTGCGACCACGAAGCCCATTGTCGTTTCAATGGCGACTGGCCA
AGGCCATGTTGACCGAGAAGTTTTAGACTTGTCCCACCATCCCATCTACC
AGCTACGCAGAGAACACGGCCTCCTCGCTCTTGTACCTGTCGCTCGAAGT
GGCCGGGATACGTGCCGGTTCAGGGCCGGGCACGGCGACCTTGGGACACG
CCGCGGGCCACGTGGGGAAGGCGGTAGGAATCTGCGCTTCGCTTAGGGCG
CTAGCTCAACCGTCGACCGCCGGGGGGGAAAGGGTCGCAACCACCTGCGT
CCTCCCCATGGACGTGATGCGGAAGAACGTGCTACGCCACGGTGTGCTTG
AGCGGGGTCCACGGAGCCCCGACGAATCGCACGCGCTCGCGGAGTGCGTG
TTTGACGTGGCCTCCGTGGCGAAAGGGCACATGGAAGCCTCGGAGGAGTC
GCTAGCAGCAGCGCGAATAGAAACGGGTGGAAAACTGCCGAGGGGTGCTT
TCGCGGCGCTGCTGCCGGGGATGCGAGCCGCATGGTACCTGGAGACGCTG
CAGAAGTGCAACTTCGACGCATTCGACGAAGGGCTGCGACCACGAAGCCC
ATTGTCGTTTCAATGGCGACTGGCCAAGGCCATGTTGACCGAGAAGTTTT
AG
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