mRNA_H-elongata_contig105688.471.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI) HSP 1 Score: 252 bits (643), Expect = 7.490e-81 Identity = 133/187 (71.12%), Postives = 152/187 (81.28%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPS-----TAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF 573
YAENTASSLLYLSLE+AG+RAG+GPG A LGHAAGHVGKA GIC LR+LA P ++G A +CVLP DVMR+ +LRH VLERGP+ E+HALAECVF VASVAKGH+EA+EE LAAAR ETGGKLP GAFAALLPG+R AWYLETLQ C F+AFDE LRP+SP FQ RL +A++TEKF
Sbjct: 137 YAENTASSLLYLSLELAGVRAGAGPGAAALGHAAGHVGKAAGICTLLRSLALPPPPAALSSGSIGFAESCVLPSDVMRRFLLRHAVLERGPQDDKEAHALAECVFAVASVAKGHIEAAEEGLAAAREETGGKLPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAVITEKF 323
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.550e-39 Identity = 91/182 (50.00%), Postives = 114/182 (62.64%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF 573
YAE+TASSLLYLSLE AG+ HAAGH+GKAVGIC LRA+ S VLP ++RK+++ VL G R+ E+ ALA C +DVA VAKGHME +E + +G L AF ALLPG+RAAWYLE L+K F+AFD L PRS + FQ+R+A+A +T KF
Sbjct: 164 YAEHTASSLLYLSLEAAGVA------DERAEHAAGHIGKAVGICTLLRAVQHHSA------QKLSVLPGQLLRKHLVASTVLFNGARTEAEAEALAACFYDVACVAKGHMEQGQE------LASG--LSNDAFRALLPGVRAAWYLEALEKAGFNAFDASLTPRSWIPFQFRVARAAMTHKF 325
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA) HSP 1 Score: 108 bits (270), Expect = 4.060e-25 Identity = 72/173 (41.62%), Postives = 97/173 (56.07%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRL 546
YAENTASSLLYL+LE +R T HAA HVG+A GI LRA + + +P+++ R+ + + RGP SP+ + AL++ F+VA+ A HME + E LA+ + G L R ALLP +R YL+ LQK F+A D+ L PRS L FQ RL
Sbjct: 146 YAENTASSLLYLTLEALHVR------HPTADHAASHVGRATGIATVLRATKFHAA------HQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLSRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRL 306
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A0U9HJ73_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HJ73_KLENI) HSP 1 Score: 82.4 bits (202), Expect = 2.610e-15 Identity = 63/162 (38.89%), Postives = 80/162 (49.38%), Query Frame = 1
Query: 25 SYAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGL 510
SYAE+TAS +LYL+LE AGI+ HAA H+GKA G+ LRA S + LP+DV K HGV+E S AL VF+VA AK H+E ++ G LP A LLP + YL++LQ+ NFD F L
Sbjct: 164 SYAESTASGILYLTLEAAGIK------NTEADHAASHIGKASGLALLLRATPVHS------LKRRTYLPLDVTGK----HGVVEEDIYQRKSSDALNAAVFEVADAAKAHLEKAQSMR--------GSLPAEALPILLPAIPVGTYLDSLQRHNFDVFSPHL 301
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A2R6XSE0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XSE0_MARPO) HSP 1 Score: 81.6 bits (200), Expect = 3.440e-15 Identity = 64/161 (39.75%), Postives = 85/161 (52.80%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGL 510
YAENTAS +LYL+LE AGIR + HAA H+GKA GI LR + G R T +P+D+ K+ L + RG ALA+ V +VAS A H+ SLA+ +P+GA LLP + A L++L+KCNF+ FD L
Sbjct: 131 YAENTASVILYLTLEAAGIR------STAADHAASHIGKAAGIGLLLRG----TPVHGSRRRT--YIPIDIAAKHGLSQEDIYRG----QNREALADAVHEVASFANAHL-VHARSLAST-------VPKGAVTVLLPAVPAGLLLQSLEKCNFNVFDSKL 267
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A8K1C5K0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K0_PYTOL) HSP 1 Score: 81.6 bits (200), Expect = 4.460e-15 Identity = 62/182 (34.07%), Postives = 88/182 (48.35%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPLSFQWRLAKAMLTEKF 573
YA+ TA+SLLYL+LE G+R G+ AAGH G AVG+ LR LP D++ K+ L + E + P E LA VF+VA +A H+ AS E +P+ A ALL + ++ YLE L++ NF+ FD L RSP+ ++ K K+
Sbjct: 154 YADKTAASLLYLTLECLGVRDGAAD------RAAGHAGVAVGLTTLLRGTPY------HLAHNQLYLPEDLLLKHDLTNEHFEAASQDPAEGKKLAPVVFEVACLALEHLRASRELTR--------DVPKEARPALLSVVSSSMYLEQLERVNFNVFDPSLMQRSPMQLHLQVLKNYFLRKY 315
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: C3ZBT5_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZBT5_BRAFL) HSP 1 Score: 79.3 bits (194), Expect = 1.450e-14 Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPL 528
Y+E T SS+LYL+LE+ GI+ HAA H+GKA+GIC +LRA P A RV LPMDVM ++ GV + + + + ++++AS++ H+E + +PR A +A LP + YL+ +QK +F+ FD L R L
Sbjct: 97 YSEQTVSSVLYLTLEILGIK------DVHADHAASHIGKAIGICTALRAA--PYLANRRRV----FLPMDVM----MQFGVSQEDIVRGKQDQKVKDVMYEIASLSHSHLEKARSLKK--------DVPRKAMSAFLPALSCDSYLKKIQKADFNVFDSSLHQRDTL 239
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: D8QXA7_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QXA7_SELML) HSP 1 Score: 78.6 bits (192), Expect = 4.710e-14 Identity = 64/162 (39.51%), Postives = 87/162 (53.70%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLR 513
YAE+TAS+LLYL+LE AG+R + HAA H GKA GI L A A S +RV C +P++V K+ + L RG R + +A VF+VASVA H+E ++ A A+ +PR A +LP + +L TL + FD FD LR
Sbjct: 131 YAESTASALLYLTLEAAGVR------STKADHAASHTGKAAGISLLLEATAHHSA---KRV---CYIPVEVAVKHGVSQEDLYRGVRGDE---GVARAVFEVASVAHAHLE---KARALAK-----DVPREASPVMLPAVATDEFLATLMRSGFDPFDPRLR 269
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: A0A6P4YWM6_BRABE (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YWM6_BRABE) HSP 1 Score: 77.0 bits (188), Expect = 1.270e-13 Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVLERGPRSPDESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFDEGLRPRSPL 528
Y+E T SS+LYL+LE+ GI+ HAA H+GKA+GIC +LRA P A RV LPMDVM ++ GV + + + + ++++AS++ H+E + +P+ + +A LP + +YL+ +QK +F+ FD L+ R L
Sbjct: 111 YSEQTVSSVLYLTLEILGIK------DVHADHAASHIGKAIGICTALRAA--PYLANRRRV----FLPMDVM----IQCGVSQEDIVRGRQDQKVKDVMYEIASLSHSHLEKARSLKK--------DVPKKSMSAFLPALSCDFYLKRIQKVDFNIFDSSLQQRDTL 253
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Match: B9N3P4_POPTR (Uncharacterized protein n=9 Tax=Saliceae TaxID=238069 RepID=B9N3P4_POPTR) HSP 1 Score: 76.6 bits (187), Expect = 2.590e-13 Identity = 68/181 (37.57%), Postives = 96/181 (53.04%), Query Frame = 1
Query: 28 YAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVGICASLRALAQPSTAGGERVATTCVLPMDVMRKNVLRHGVL-ERGPRSP---DESHALAECVFDVASVAKGHMEASEESLAAARIETGGKLPRGAFAALLPGMRAAWYLETLQKCNFDAFD----EGLRPRSPLSFQWRL 546
YAE+T S+LLY++L+ GIR + HAA H GKA G+ LR+L P A R C +P +V K HG+L + G R D +L VFD+ASVA H++ + SLA G +P A + LLP + A +L+TL + +FD FD G+ SP+S+Q +L
Sbjct: 134 YAEDTISTLLYMTLQAGGIR------STAADHAASHAGKASGLLLLLRSL--PYHASRNR--HFCYIPTEVAAK----HGLLVKEGGRFEIRLDSRESLCNAVFDMASVANVHLQKAR-SLA-------GTVPTEARSVLLPAVPAQVFLDTLSRVHFDVFDPRLARGVLGISPVSYQLKL 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105688.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105688.471.1 >prot_H-elongata_contig105688.471.1 ID=prot_H-elongata_contig105688.471.1|Name=mRNA_H-elongata_contig105688.471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp TCPTIPSTSYAENTASSLLYLSLEVAGIRAGSGPGTATLGHAAGHVGKAVback to top mRNA from alignment at H-elongata_contig105688:733..1308- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105688.471.1 ID=mRNA_H-elongata_contig105688.471.1|Name=mRNA_H-elongata_contig105688.471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig105688:733..1308- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105688:733..1308- >mRNA_H-elongata_contig105688.471.1 ID=mRNA_H-elongata_contig105688.471.1|Name=mRNA_H-elongata_contig105688.471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig105688:733..1308- (Himanthalia elongata Himel1 dioecious)back to top |