mRNA_H-elongata_contig10564.467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10564.467.1
Unique NamemRNA_H-elongata_contig10564.467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: D7FSG7_ECTSI (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG7_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 1.870e-99
Identity = 160/262 (61.07%), Postives = 185/262 (70.61%), Query Frame = 1
Query:    1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGN-------------------------------PEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 693
            ACVK+C+REL KRDPTFA+TLK+KT+AK G +HPDLRAV+PCPVPLV+VGNKYDVFKNQES RKR L QALRF+AH+NGASLLFCSS++KKLKD+ + TLN HLFR+  RK SETNPERPL V  G DS+D+ILK+TP GTRREDF+SG  +ADGAM  WKRA++DVFGA D +              GG+                                    N FPE +VDEHRAQRDEILRRYRKDAERK KLA K
Sbjct:  165 ACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCSSRDKKLKDILRLTLNTHLFRAGSRKSSETNPERPLAVTAGCDSLDSILKNTPPGTRREDFLSGNGIADGAMGVWKRAVEDVFGAPDRA--------------GGSLMSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDNPFPEAAVDEHRAQRDEILRRYRKDAERKAKLAMK 412          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A6H5L1B5_9PHAE (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B5_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 2.370e-85
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 1
Query:    1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATD 516
            ACVK+C+REL KRDPTFA+TLK+ T+AK G +HPDLR+V+PCPVPLV+VGNKYDVFKNQES RKR L QALRF+AH+NGASLLFCSS+EKKLKD+ + TLN HLFR+S RK SETNPERPL V  G DS+ +ILK+TP GTR EDF+SG  +ADGAM  WKR ++DVFG  D
Sbjct:  165 ACVKVCVRELGKRDPTFAETLKRTTYAKLGRDHPDLRSVRPCPVPLVMVGNKYDVFKNQESARKRILAQALRFVAHVNGASLLFCSSREKKLKDILRLTLNTHLFRASSRKSSETNPERPLVVTAGCDSLGSILKNTPPGTRLEDFLSGNGIADGAMGVWKRTVEDVFGPPD 336          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A835YX97_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX97_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.910e-64
Identity = 114/234 (48.72%), Postives = 150/234 (64.10%), Query Frame = 1
Query:    1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPS------DELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKL 684
            A VK  +REL K DPTFAD LK++T+AKFG  HPDL+ VKPCPVPL+ V NKYDVF++ +S R+R +GQALRF+AH+NGA+LL CS+K+K LKD F+  LN HLF +  ++ SET PE+PL V  G+D+ ++ILK  P  TR  DF+    + +GA   W+R I++  G                                   +PE +VDE RAQRDE+LRRYRK+AER+ KL
Sbjct:  176 ASVKGAVRELAKADPTFADGLKRRTYAKFGREHPDLKIVKPCPVPLIFVANKYDVFRDSDSARRRLVGQALRFLAHVNGATLLCCSAKDKALKDAFRALLNRHLFAAPAKRLSETAPEKPLAVSAGADTFESILKAPPGATRYSDFIGTSGVMEGAAALWQRHIEEACGGASAEALALARGXXXXXXXXKXXXXXXXXXXXXXXYPEPAVDEMRAQRDELLRRYRKEAERRAKL 409          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A7S2FGJ4_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGJ4_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.830e-41
Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 1
Query:    1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSE-TNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKL 684
            A V  C+  L + +P  A  L++    +   +H D R V+P  +PL+++ NKYD++K+ ESV+K+T+ QALRF+AH NGA+LL   +++K  ++  +  L   LFR+S  K  E TN ++P+ VP G DS D ILK  P GT   DFV  +++   A  TW R ++D+FG     D+ +           G  +     F E +VD+ R+QRD  L +Y+K+AERK +L
Sbjct:  113 ARVDECVATLKQTNPEAASALEESASLRIPADHADARVVRPMTIPLLIIANKYDIYKDMESVQKKTISQALRFVAHSNGATLLTVGARDKASQNNLRMQLTQLLFRTSSSKKVELTNHDKPMAVPAGVDSFDNILKIPPKGTDVADFVGPRSVNSDANVTWARVMEDMFGPKRSLDDAE-----------GEEKKEDEVFLEPAVDDMRSQRDAALVQYKKEAERKLQL 330          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: UPI0001CB9D22 (cytoplasmic dynein 2 light intermediate chain 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9D22)

HSP 1 Score: 134 bits (337), Expect = 5.630e-34
Identity = 78/229 (34.06%), Postives = 128/229 (55.90%), Query Frame = 1
Query:    7 VKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 693
            ++  M++ + RD T    +K K ++KFG +HPD   ++P PVPLV++G KYDVF++ +S +++ + + LRF+AH +GA+L FCS K + L    +Q ++  +F ++  K    +P +P+ VP G DS+  I    P      D   GK  A   ++ WK+A    F     S  + E+P+ +             ++ E++VD  RAQ+DE L RYR+ +ERK K  A+
Sbjct:  146 IEKVMQDASMRDSTLQPRMKNKAWSKFGEDHPDKDMIEPFPVPLVIIGCKYDVFQDFDSEKRKVICRTLRFVAHSHGATLQFCSLKTESLVTRTRQLISHFVFNTASSKAMAVDPNKPVIVPAGMDSLQQI---GPPPVAEGDI--GKLTARNPLELWKQAYTAFF-PQQISSSVAEDPAKDP------------QYSESAVDNMRAQKDEELERYRRQSERKAKDLAR 356          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: UPI00109BF3C2 (LOW QUALITY PROTEIN: cytoplasmic dynein 2 light intermediate chain 1-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF3C2)

HSP 1 Score: 128 bits (322), Expect = 1.190e-31
Identity = 80/227 (35.24%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    7 VKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLA 687
            VK  + EL K+DP+  D +KK  + +FG +HPD   V+P PVPL ++G KYD++++ +  +++ + +ALRF+AH NGA L F S+K + L    +  +   LF +S  K       +P+ VP G D+++ I    P  +  ED   GK  +    D WK +    F            P  N + N G+      +F E++VD  R Q+DE L RYRK AERK + A
Sbjct:  160 VKKVLDELAKKDPSAVDEMKKNAWKRFGKDHPDKSFVEPFPVPLAIIGGKYDIYQDLDPEKRKMISKALRFVAHSNGAHLQFFSTKSENLTGRARALIGHLLFHTSLSKSVSLEHSKPIIVPAGLDTLNQIGA-PPVSS--EDL--GKLQSRSPYDLWKASYATFF------------PPENVHRNQGDDPSKDPQFYESAVDAMRKQKDEELERYRKMAERKAREA 369          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A485KQ56_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ56_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.590e-31
Identity = 85/226 (37.61%), Postives = 123/226 (54.42%), Query Frame = 1
Query:   19 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR-KDAERKTKLAAK 693
            +R+LT   P   + L     AK+G  HPD R V P  +PL++VG KY+ F+++ES +++TL QA+RFIAH  GA+L+F S K+K L   F+ TL A L+++ G K ++   E+ LFVP GSDS D I    P G R  DF       D  M  W +A+ + +    P  + Q     ++            +FPE  +D  R Q+ E LRRY+ K  ++K K  AK
Sbjct:  250 LRKLTPEGPKDENAL----LAKYGATHPDRRDVSPVALPLLIVGAKYETFRDEESAKRKTLVQAVRFIAHAIGATLMFTSVKDKALATQFRTTLTAMLYKTDGGKSTK-ELEKGLFVPAGSDSFDDI--GLPKGARATDFEDANL--DKRMKLWAKAVAESYPPVTPEVKEQVEDEKDEA---------DEKFPEPVIDALRKQKREELRRYKEKKVDKKPKKDAK 457          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A225X019_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X019_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.450e-31
Identity = 82/231 (35.50%), Postives = 128/231 (55.41%), Query Frame = 1
Query:   19 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGS-ETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVF--GATDPSDEL-QENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR----KDAERKTKLA 687
            M+E    D    D L+++  A++G  HPD   + P P+PL+VVGNKYD F++++ ++++ + QA+RF++H+ GA++LF S K+K L   F+  +    FRS  R  S E +P +PLFVP G+D  + I      G R++ F  G+   +     W +   + +   A    D L Q+  S  D  +G   E + N FPE S+D  R Q+ E LRRYR    K  ERK++ +
Sbjct:  157 MKEKNPVDKFAVDALRQEAMARYGHGHPDKDEISPLPLPLLVVGNKYDTFRDEDPIKRKGVIQAVRFLSHMYGATVLFTSMKDKNLVTQFRSVMKGFAFRSMARGTSKEVDPAKPLFVPAGADLFEDIGVPKSAGWRQDRF--GRDQHEEKARQWIKVASEYYPPSANAAEDLLTQKEVSEQDDKDG---EESPNHFPEPSIDRARQQKREELRRYRDNRRKAQERKSRAS 382          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: W2JJR5_PHYPR (Cytoplasmic dynein 2 light intermediate chain 1 n=10 Tax=Phytophthora TaxID=4783 RepID=W2JJR5_PHYPR)

HSP 1 Score: 125 bits (315), Expect = 1.210e-30
Identity = 80/224 (35.71%), Postives = 127/224 (56.70%), Query Frame = 1
Query:   40 DPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGS-ETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFG-ATDPSDEL--QENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR----KDAERKTKLA 687
            D    D LK    A++G  HPD   V P P+P++VVGNKYD F++++S++++ + QA+R+++H+ GAS+LF S K+K L   F+  +    FR+  R  S E +P +PLFVP G+D  + I        R++ F  GK   +     W +   + +  + + S++L  Q+  S  D  +G   E + N+FPE ++D  R Q+ E LRRYR    K  ERK++ A
Sbjct:  164 DKFAVDALKHDAMARYGNGHPDRDEVAPLPLPVLVVGNKYDTFRDEDSIKRKGITQAVRYLSHMYGASVLFTSMKDKNLVTQFRSIMKGFAFRAMARGASKEVDPAKPLFVPAGADLFEDIGVPKSAAWRQDRF--GKDQHEEKARQWIKIASEYYPPSANASEDLLTQKELSEQDDKDG---EESSNQFPEPNIDRARQQKQEELRRYRDNRRKAQERKSRGA 382          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A024TDT2_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.930e-30
Identity = 77/205 (37.56%), Postives = 119/205 (58.05%), Query Frame = 1
Query:   79 AKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 693
            AK+G  HPD R V P  +PL++VG KY+ F++++SV+++ L QA+R+IAH  GA+LLF + K+K L   F+  LNA L++S G   S    ++ LFVP GSD+ + I    P G R  DF       D  M  W +AI +++    P +   ++  ++D       +   +++PE S+D  R Q+ E LRRY KD + + K +AK
Sbjct:  153 AKYGEKHPDRRDVSPISIPLLIVGAKYETFRDEDSVKRKGLIQAVRYIAHAIGATLLFTTVKDKALATQFRSALNAALYKSEGGGKSTKEVDKGLFVPPGSDTFEEI--GLPKGARVADFEESNL--DKRMKLWAKAIAELYPPVTPPEAAGKDAVDDDK------DDVDDKYPEPSIDALRKQKREELRRY-KDKKTEKKPSAK 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSG7_ECTSI1.870e-9961.07Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A6H5L1B5_9PHAE2.370e-8572.09Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A835YX97_9STRA1.910e-6448.72Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A7S2FGJ4_9STRA2.830e-4137.99Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
UPI0001CB9D225.630e-3434.06cytoplasmic dynein 2 light intermediate chain 1-li... [more]
UPI00109BF3C21.190e-3135.24LOW QUALITY PROTEIN: cytoplasmic dynein 2 light in... [more]
A0A485KQ56_9STRA2.590e-3137.61Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A225X019_9STRA4.450e-3135.50Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
W2JJR5_PHYPR1.210e-3035.71Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A024TDT2_9STRA1.930e-3037.56Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10564contigH-elongata_contig10564:236..1941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.0
Seed ortholog evalue7.6e-78
Seed eggNOG ortholog2880.D7FSG7
Preferred nameDYNC2LI1
KEGG koko:K10417
KEGG Pathwayko04962,map04962
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0030990,GO:0031344,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033043,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045177,GO:0045504,GO:0046907,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0060491,GO:0065007,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0097546,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1902494,GO:1905515
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3929@1,KOG3929@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size693
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10564.467.1prot_H-elongata_contig10564.467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10564 248..1941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929589.3290763-UTR-H-elongata_contig10564:235..2471622929589.3290763-UTR-H-elongata_contig10564:235..247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10564 236..247 +
1691679081.8655732-UTR-H-elongata_contig10564:235..2471691679081.8655732-UTR-H-elongata_contig10564:235..247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10564 236..247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929589.379386-CDS-H-elongata_contig10564:247..4061622929589.379386-CDS-H-elongata_contig10564:247..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 248..406 +
1691679081.8849015-CDS-H-elongata_contig10564:247..4061691679081.8849015-CDS-H-elongata_contig10564:247..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 248..406 +
1622929589.3917537-CDS-H-elongata_contig10564:577..7121622929589.3917537-CDS-H-elongata_contig10564:577..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 578..712 +
1691679081.8959515-CDS-H-elongata_contig10564:577..7121691679081.8959515-CDS-H-elongata_contig10564:577..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 578..712 +
1622929589.4069982-CDS-H-elongata_contig10564:908..11251622929589.4069982-CDS-H-elongata_contig10564:908..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 909..1125 +
1691679081.9055963-CDS-H-elongata_contig10564:908..11251691679081.9055963-CDS-H-elongata_contig10564:908..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 909..1125 +
1622929589.4198508-CDS-H-elongata_contig10564:1384..14961622929589.4198508-CDS-H-elongata_contig10564:1384..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 1385..1496 +
1691679081.9247775-CDS-H-elongata_contig10564:1384..14961691679081.9247775-CDS-H-elongata_contig10564:1384..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 1385..1496 +
1622929589.430625-CDS-H-elongata_contig10564:1883..19411622929589.430625-CDS-H-elongata_contig10564:1883..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 1884..1941 +
1691679081.9390876-CDS-H-elongata_contig10564:1883..19411691679081.9390876-CDS-H-elongata_contig10564:1883..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10564 1884..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10564.467.1

>prot_H-elongata_contig10564.467.1 ID=prot_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYD
VFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHL
FRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLAD
GAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSV
DEHRAQRDEILRRYRKDAERKTKLAAK
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mRNA from alignment at H-elongata_contig10564:236..1941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10564.467.1 ID=mRNA_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1706bp|location=Sequence derived from alignment at H-elongata_contig10564:236..1941+ (Himanthalia elongata Himel1 dioecious)
GCTTGCGTCAAGATGTGTATGCGCGAGCTCACCAAGAGAGACCCGACGTT CGCGGATACACTGAAGAAGAAAACGTTCGCTAAGTTTGGGCCAAACCACC CAGACTTGCGCGCTGTCAAGCCCTGCCCGGTACCATTGGTCGTCGTCGGA AACAAGTATGACGTCTTCAAGGTATGCTCACATAATATCTTGGGTGATTT GTCGCTTTCCTGACGGAAGTAGATTTGACAGAAAAGTGAGAATGTAGCAC TTTGAACTGGGGGGGAAGGGGTTAGAAGAGAGGTTTAAGTGACTCGTTGC TCACGTTCACCGCACGCCATTGGGTGCGATTTCCTCGACCAGAATCAGGA GAGCGTGAGAAAGCGAACACTCGGGCAGGCGCTCAGATTCATTGCACACC TGAACGGCGCGTCTCTGCTGTTCTGCTCCTCCAAAGAGAAGAAGCTCAAA GACGTTTTCCAGCAAACACTCAACGCGGTGAGGTTCTCATCACTATATAA TCGTTTGATCGTCACTCGTGAGGGGGGGAAGAGTTTTGCGTGCACCGACC TGGTTACGCCAGCCGTTGTGGGCGCGAAAGTATACCGGACAGTTTTTCCC GTGGTACAACTCAACACCCGCTCTTGCCTTCTCTGTGTCTCTCCGTGTTC TCCTCGGTAACTTTGGAGAACAGCATCTGTTTCGATCCAGCGGTCGTAAA GGCAGCGAGACCAATCCGGAAAGGCCACTTTTTGTCCCGCTAGGGAGCGA CTCGATGGACGCGATTCTCAAGCACACTCCCACGGGCACAAGACGCGAAG ACTTCGTGTCTGGCAAAACACTAGCAGACGGGGCCATGGATACGTGGAAG CGAGCCATTCAAGATGTTTTCGGCGCGACCGACCCCAGCGGTGAGTGGCA TTGGATGGCGTGGCAACGAAATAACCTCCAAAGAACCTAATTTTATTCCC GAATACCCTGATGCGCGCAGGGATTCATTTTCCTTTCATGCCGCCACTTC AGAGAGGGGATTACAATAGCCTGTCAGATAAGGGCGCAAATAACCCCATC GCCGGAATGGACTGTTTCGATACCGTACCCCTAAACTCTGTAGCATATGT GTAACATCCCTACCTTCCCCTACCTCCTCTCTTTCGTTGAATGACTCAGA CGAGCTACAGGAAAATCCTAGCAATAACGATTACGGGAATGGGGGGAACC CTGAAGGCAATCAAAACGAATTCCCAGAAACATCGGTCGACGAGCACCGG GCTCAGCGAGAGTGAGAATTACTACCTCCTAACCAGGCGGGAATGACTTG AACATATGAGAGTCTTTTTGGTGTATATTGTTAAGAACAGAGCTAGAAAA TGTCCCGACCCTAGACTTAACGCTTATTACCCTTCGACGTCCGCGCTTGA CCGAGCAAGTCGTGGCGTCAGGCCATGCAGCCCTCCGGTCCTTTCTACTT TGTCATTTTGTTTGAGCGCTTCCTGGCACCTATCTATCAACCACAAAAAG CTGCTGCTGTACGCCTTTGGAGTGCACAGGCGTTCTTAACATATATGTTA GGGGGATGTCGACATCTTGGTTAACCTCATTTGACTTTCCCTTTTGACGA TTCATATTATATGTGCGGGCGCTTGATCCACCCTGGGGATGTTGTAAGTG AGATCTTGCGTAGGTACCGGAAAGACGCGGAGCGCAAGACAAAGCTGGCA GCAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig10564:236..1941+

>mRNA_H-elongata_contig10564.467.1 ID=mRNA_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig10564:236..1941+ (Himanthalia elongata Himel1 dioecious)
ATGTGTATGCGCGAGCTCACCAAGAGAGACCCGACGTTCGCGGATACACT
GAAGAAGAAAACGTTCGCTAAGTTTGGGCCAAACCACCCAGACTTGCGCG
CTGTCAAGCCCTGCCCGGTACCATTGGTCGTCGTCGGAAACAAGTATGAC
GTCTTCAAGATGTGTATGCGCGAGCTCACCAAGAGAGACCCGACGTTCGC
GGATACACTGAAGAAGAAAACGTTCGCTAAGTTTGGGCCAAACCACCCAG
ACTTGCGCGCTGTCAAGCCCTGCCCGGTACCATTGGTCGTCGTCGGAAAC
AAGTATGACGTCTTCAAGAATCAGGAGAGCGTGAGAAAGCGAACACTCGG
GCAGGCGCTCAGATTCATTGCACACCTGAACGGCGCGTCTCTGCTGTTCT
GCTCCTCCAAAGAGAAGAAGCTCAAAGACGTTTTCCAGCAAACACTCAAC
GCGAATCAGGAGAGCGTGAGAAAGCGAACACTCGGGCAGGCGCTCAGATT
CATTGCACACCTGAACGGCGCGTCTCTGCTGTTCTGCTCCTCCAAAGAGA
AGAAGCTCAAAGACGTTTTCCAGCAAACACTCAACGCGCATCTGTTTCGA
TCCAGCGGTCGTAAAGGCAGCGAGACCAATCCGGAAAGGCCACTTTTTGT
CCCGCTAGGGAGCGACTCGATGGACGCGATTCTCAAGCACACTCCCACGG
GCACAAGACGCGAAGACTTCGTGTCTGGCAAAACACTAGCAGACGGGGCC
ATGGATACGTGGAAGCGAGCCATTCAAGATGTTTTCGGCGCGACCGACCC
CAGCGCATCTGTTTCGATCCAGCGGTCGTAAAGGCAGCGAGACCAATCCG
GAAAGGCCACTTTTTGTCCCGCTAGGGAGCGACTCGATGGACGCGATTCT
CAAGCACACTCCCACGGGCACAAGACGCGAAGACTTCGTGTCTGGCAAAA
CACTAGCAGACGGGGCCATGGATACGTGGAAGCGAGCCATTCAAGATGTT
TTCGGCGCGACCGACCCCAGCGACGAGCTACAGGAAAATCCTAGCAATAA
CGATTACGGGAATGGGGGGAACCCTGAAGGCAATCAAAACGAATTCCCAG
AAACATCGGTCGACGAGCACCGGGCTCAGCGAGAACGAGCTACAGGAAAA
TCCTAGCAATAACGATTACGGGAATGGGGGGAACCCTGAAGGCAATCAAA
ACGAATTCCCAGAAACATCGGTCGACGAGCACCGGGCTCAGCGAGATGAG
ATCTTGCGTAGGTACCGGAAAGACGCGGAGCGCAAGACAAAGCTGGCAGC
AAAATGAGATCTTGCGTAGGTACCGGAAAGACGCGGAGCGCAAGACAAAG
CTGGCAGCAAAA
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