mRNA_H-elongata_contig10564.467.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: D7FSG7_ECTSI (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG7_ECTSI) HSP 1 Score: 306 bits (783), Expect = 1.870e-99 Identity = 160/262 (61.07%), Postives = 185/262 (70.61%), Query Frame = 1
Query: 1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGN-------------------------------PEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 693
ACVK+C+REL KRDPTFA+TLK+KT+AK G +HPDLRAV+PCPVPLV+VGNKYDVFKNQES RKR L QALRF+AH+NGASLLFCSS++KKLKD+ + TLN HLFR+ RK SETNPERPL V G DS+D+ILK+TP GTRREDF+SG +ADGAM WKRA++DVFGA D + GG+ N FPE +VDEHRAQRDEILRRYRKDAERK KLA K
Sbjct: 165 ACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCSSRDKKLKDILRLTLNTHLFRAGSRKSSETNPERPLAVTAGCDSLDSILKNTPPGTRREDFLSGNGIADGAMGVWKRAVEDVFGAPDRA--------------GGSLMSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDNPFPEAAVDEHRAQRDEILRRYRKDAERKAKLAMK 412
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A6H5L1B5_9PHAE (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B5_9PHAE) HSP 1 Score: 266 bits (681), Expect = 2.370e-85 Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 1
Query: 1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATD 516
ACVK+C+REL KRDPTFA+TLK+ T+AK G +HPDLR+V+PCPVPLV+VGNKYDVFKNQES RKR L QALRF+AH+NGASLLFCSS+EKKLKD+ + TLN HLFR+S RK SETNPERPL V G DS+ +ILK+TP GTR EDF+SG +ADGAM WKR ++DVFG D
Sbjct: 165 ACVKVCVRELGKRDPTFAETLKRTTYAKLGRDHPDLRSVRPCPVPLVMVGNKYDVFKNQESARKRILAQALRFVAHVNGASLLFCSSREKKLKDILRLTLNTHLFRASSRKSSETNPERPLVVTAGCDSLGSILKNTPPGTRLEDFLSGNGIADGAMGVWKRTVEDVFGPPD 336
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A835YX97_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX97_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.910e-64 Identity = 114/234 (48.72%), Postives = 150/234 (64.10%), Query Frame = 1
Query: 1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPS------DELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKL 684
A VK +REL K DPTFAD LK++T+AKFG HPDL+ VKPCPVPL+ V NKYDVF++ +S R+R +GQALRF+AH+NGA+LL CS+K+K LKD F+ LN HLF + ++ SET PE+PL V G+D+ ++ILK P TR DF+ + +GA W+R I++ G +PE +VDE RAQRDE+LRRYRK+AER+ KL
Sbjct: 176 ASVKGAVRELAKADPTFADGLKRRTYAKFGREHPDLKIVKPCPVPLIFVANKYDVFRDSDSARRRLVGQALRFLAHVNGATLLCCSAKDKALKDAFRALLNRHLFAAPAKRLSETAPEKPLAVSAGADTFESILKAPPGATRYSDFIGTSGVMEGAAALWQRHIEEACGGASAEALALARGXXXXXXXXKXXXXXXXXXXXXXXYPEPAVDEMRAQRDELLRRYRKEAERRAKL 409
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A7S2FGJ4_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGJ4_9STRA) HSP 1 Score: 153 bits (386), Expect = 2.830e-41 Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 1
Query: 1 ACVKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSE-TNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKL 684
A V C+ L + +P A L++ + +H D R V+P +PL+++ NKYD++K+ ESV+K+T+ QALRF+AH NGA+LL +++K ++ + L LFR+S K E TN ++P+ VP G DS D ILK P GT DFV +++ A TW R ++D+FG D+ + G + F E +VD+ R+QRD L +Y+K+AERK +L
Sbjct: 113 ARVDECVATLKQTNPEAASALEESASLRIPADHADARVVRPMTIPLLIIANKYDIYKDMESVQKKTISQALRFVAHSNGATLLTVGARDKASQNNLRMQLTQLLFRTSSSKKVELTNHDKPMAVPAGVDSFDNILKIPPKGTDVADFVGPRSVNSDANVTWARVMEDMFGPKRSLDDAE-----------GEEKKEDEVFLEPAVDDMRSQRDAALVQYKKEAERKLQL 330
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: UPI0001CB9D22 (cytoplasmic dynein 2 light intermediate chain 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9D22) HSP 1 Score: 134 bits (337), Expect = 5.630e-34 Identity = 78/229 (34.06%), Postives = 128/229 (55.90%), Query Frame = 1
Query: 7 VKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 693
++ M++ + RD T +K K ++KFG +HPD ++P PVPLV++G KYDVF++ +S +++ + + LRF+AH +GA+L FCS K + L +Q ++ +F ++ K +P +P+ VP G DS+ I P D GK A ++ WK+A F S + E+P+ + ++ E++VD RAQ+DE L RYR+ +ERK K A+
Sbjct: 146 IEKVMQDASMRDSTLQPRMKNKAWSKFGEDHPDKDMIEPFPVPLVIIGCKYDVFQDFDSEKRKVICRTLRFVAHSHGATLQFCSLKTESLVTRTRQLISHFVFNTASSKAMAVDPNKPVIVPAGMDSLQQI---GPPPVAEGDI--GKLTARNPLELWKQAYTAFF-PQQISSSVAEDPAKDP------------QYSESAVDNMRAQKDEELERYRRQSERKAKDLAR 356
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: UPI00109BF3C2 (LOW QUALITY PROTEIN: cytoplasmic dynein 2 light intermediate chain 1-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF3C2) HSP 1 Score: 128 bits (322), Expect = 1.190e-31 Identity = 80/227 (35.24%), Postives = 121/227 (53.30%), Query Frame = 1
Query: 7 VKMCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLA 687
VK + EL K+DP+ D +KK + +FG +HPD V+P PVPL ++G KYD++++ + +++ + +ALRF+AH NGA L F S+K + L + + LF +S K +P+ VP G D+++ I P + ED GK + D WK + F P N + N G+ +F E++VD R Q+DE L RYRK AERK + A
Sbjct: 160 VKKVLDELAKKDPSAVDEMKKNAWKRFGKDHPDKSFVEPFPVPLAIIGGKYDIYQDLDPEKRKMISKALRFVAHSNGAHLQFFSTKSENLTGRARALIGHLLFHTSLSKSVSLEHSKPIIVPAGLDTLNQIGA-PPVSS--EDL--GKLQSRSPYDLWKASYATFF------------PPENVHRNQGDDPSKDPQFYESAVDAMRKQKDEELERYRKMAERKAREA 369
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A485KQ56_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ56_9STRA) HSP 1 Score: 129 bits (323), Expect = 2.590e-31 Identity = 85/226 (37.61%), Postives = 123/226 (54.42%), Query Frame = 1
Query: 19 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR-KDAERKTKLAAK 693
+R+LT P + L AK+G HPD R V P +PL++VG KY+ F+++ES +++TL QA+RFIAH GA+L+F S K+K L F+ TL A L+++ G K ++ E+ LFVP GSDS D I P G R DF D M W +A+ + + P + Q ++ +FPE +D R Q+ E LRRY+ K ++K K AK
Sbjct: 250 LRKLTPEGPKDENAL----LAKYGATHPDRRDVSPVALPLLIVGAKYETFRDEESAKRKTLVQAVRFIAHAIGATLMFTSVKDKALATQFRTTLTAMLYKTDGGKSTK-ELEKGLFVPAGSDSFDDI--GLPKGARATDFEDANL--DKRMKLWAKAVAESYPPVTPEVKEQVEDEKDEA---------DEKFPEPVIDALRKQKREELRRYKEKKVDKKPKKDAK 457
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A225X019_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X019_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.450e-31 Identity = 82/231 (35.50%), Postives = 128/231 (55.41%), Query Frame = 1
Query: 19 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGS-ETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVF--GATDPSDEL-QENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR----KDAERKTKLA 687
M+E D D L+++ A++G HPD + P P+PL+VVGNKYD F++++ ++++ + QA+RF++H+ GA++LF S K+K L F+ + FRS R S E +P +PLFVP G+D + I G R++ F G+ + W + + + A D L Q+ S D +G E + N FPE S+D R Q+ E LRRYR K ERK++ +
Sbjct: 157 MKEKNPVDKFAVDALRQEAMARYGHGHPDKDEISPLPLPLLVVGNKYDTFRDEDPIKRKGVIQAVRFLSHMYGATVLFTSMKDKNLVTQFRSVMKGFAFRSMARGTSKEVDPAKPLFVPAGADLFEDIGVPKSAGWRQDRF--GRDQHEEKARQWIKVASEYYPPSANAAEDLLTQKEVSEQDDKDG---EESPNHFPEPSIDRARQQKREELRRYRDNRRKAQERKSRAS 382
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: W2JJR5_PHYPR (Cytoplasmic dynein 2 light intermediate chain 1 n=10 Tax=Phytophthora TaxID=4783 RepID=W2JJR5_PHYPR) HSP 1 Score: 125 bits (315), Expect = 1.210e-30 Identity = 80/224 (35.71%), Postives = 127/224 (56.70%), Query Frame = 1
Query: 40 DPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGS-ETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFG-ATDPSDEL--QENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR----KDAERKTKLA 687
D D LK A++G HPD V P P+P++VVGNKYD F++++S++++ + QA+R+++H+ GAS+LF S K+K L F+ + FR+ R S E +P +PLFVP G+D + I R++ F GK + W + + + + + S++L Q+ S D +G E + N+FPE ++D R Q+ E LRRYR K ERK++ A
Sbjct: 164 DKFAVDALKHDAMARYGNGHPDRDEVAPLPLPVLVVGNKYDTFRDEDSIKRKGITQAVRYLSHMYGASVLFTSMKDKNLVTQFRSIMKGFAFRAMARGASKEVDPAKPLFVPAGADLFEDIGVPKSAAWRQDRF--GKDQHEEKARQWIKIASEYYPPSANASEDLLTQKELSEQDDKDG---EESSNQFPEPNIDRARQQKQEELRRYRDNRRKAQERKSRGA 382
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A024TDT2_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT2_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.930e-30 Identity = 77/205 (37.56%), Postives = 119/205 (58.05%), Query Frame = 1
Query: 79 AKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 693
AK+G HPD R V P +PL++VG KY+ F++++SV+++ L QA+R+IAH GA+LLF + K+K L F+ LNA L++S G S ++ LFVP GSD+ + I P G R DF D M W +AI +++ P + ++ ++D + +++PE S+D R Q+ E LRRY KD + + K +AK
Sbjct: 153 AKYGEKHPDRRDVSPISIPLLIVGAKYETFRDEDSVKRKGLIQAVRYIAHAIGATLLFTTVKDKALATQFRSALNAALYKSEGGGKSTKEVDKGLFVPPGSDTFEEI--GLPKGARVADFEESNL--DKRMKLWAKAIAELYPPVTPPEAAGKDAVDDDK------DDVDDKYPEPSIDALRKQKREELRRY-KDKKTEKKPSAK 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10564.467.1 >prot_H-elongata_contig10564.467.1 ID=prot_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp MCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDback to top mRNA from alignment at H-elongata_contig10564:236..1941+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10564.467.1 ID=mRNA_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1706bp|location=Sequence derived from alignment at H-elongata_contig10564:236..1941+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10564:236..1941+ >mRNA_H-elongata_contig10564.467.1 ID=mRNA_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig10564:236..1941+ (Himanthalia elongata Himel1 dioecious)back to top |