mRNA_H-elongata_contig105192.428.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 225 bits (573), Expect = 5.010e-63 Identity = 144/426 (33.80%), Postives = 236/426 (55.40%), Query Frame = 1
Query: 16 NKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EF---------PGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPT---LSKADEPWNLE-KTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
++W+K +E+ ++ N ++ V +P + +G R + K + G+V +YK RLVA+G+ Q G+ Y YSP S+R +LA + E+ D + +F+ +++EEI +++PE E V L +++YGL QA R WN + + GFE A DPCV+ + +G+ E +V ++VD++L ++ +A + A + KF++KD+G AR +G I + R L I Q Y ES+++K + A P + + L+KADEP E K +M++ PYR VG+LM + TRPDI+ V ++R +NPG +A IK+++Y TKD GI+Y G G E Y D+D+ D R S+S ++LML + W S Q+ A ++E E++ALS+ VKE +++R
Sbjct: 79 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAK--PCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMR 500
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 226 bits (576), Expect = 6.350e-63 Identity = 147/426 (34.51%), Postives = 240/426 (56.34%), Query Frame = 1
Query: 16 NKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPE------EY*EFPG---AVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPT---LSKADEPWNLE-KTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
++W+K +E+ ++ N ++ V +P + +G R + K + G+V +YK RLVA+G+ Q G+ Y YSP SIR +LA + E+ D + +F+ ++EEI +++ E E E G V L +++YGL QA R WN + + +GFE A +DPCV+ + +G+ E +V ++VD++L ++ +A + A + KF++KDMG AR +G I + R L I Q Y ES+++K + A P + + L+KADEP E K +M++ PYR VG+LM ++ TRPDI+ V ++R +NPG +A IK+++Y TKD GI+Y G G +E Y D+D+ D R S+S ++LML + W S Q+ A ++E E++ALS+ VKE +++R
Sbjct: 144 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAK--PCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMR 565
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435) HSP 1 Score: 223 bits (567), Expect = 9.180e-63 Identity = 144/423 (34.04%), Postives = 225/423 (53.19%), Query Frame = 1
Query: 4 SPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGA--VRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEK--VDVKKAS*IPATSRVPTLSKADEPWNLEKTE-MRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLRD 1254
SP+ KW + ++EM M EN V+ V P D+ + + +K+K +G V YK RLVA+GF QV+G+ Y +SP S+R++LA A D E+ D + +F+ ++EE+ + PE + + GA V +L ++IYGLVQA R WN + + + GF Q + C+++KV V ++L +VD+IL D +D L F +KD+G+A + +G I R+R R + + Q Y++ +++K +D K +P V LSK P E E M++ PY A+G++M M TRPD+ + R NPG AV I++Y TKD ++YGG L + Y+D+ F D S + V L G +SW S Q V A T E E++A SEA E +++++
Sbjct: 17 SPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKVSGSSVAFLIL-YVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVLQGV-KLSKTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTAVKNILKYLKRTKDMFLVYGGDK-ELIVNGYVDASFDTDPDDSKSQTGYVFTLNGGAVSWCSSKQSVVAGSTCEAEYIAASEAANEGVWMKE 436
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 229 bits (585), Expect = 9.700e-63 Identity = 149/426 (34.98%), Postives = 242/426 (56.81%), Query Frame = 1
Query: 16 NKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPE------EY*EFPG---AVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPT---LSKADEPWNLE-KTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
++W+K +E+ ++ N ++ V +P + +G R + K + G+V +YK RLVA+G+ Q G++Y YSP SIR +LA + E+ D + +F+ ++EEI +++ E E E G V L +++YGL QA R WN + + +GFE A +DPCV+ + +G+ E +V ++VD++L ++ +A + A + KF++KDMG AR +G I N R L I Q Y ES+++KV + A P + + L+KADEP E K +M++ PYR VG+LM ++ TRPDI+ V ++R +NPG +A IK+++Y TKD GI+Y G G +E Y D+D+ D R S+S ++LML + W S Q+ A ++E E++ALS+ VKE +++R
Sbjct: 388 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAK--PCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMR 809
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 228 bits (582), Expect = 2.320e-62 Identity = 141/427 (33.02%), Postives = 236/427 (55.27%), Query Frame = 1
Query: 4 SPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTV-IGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRV-PTLSKADEPWNLEKTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKS--------CGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
+PEW +W++ + E+ + + Y P + +G R Y+ K +G++ +YK RLVAQGF Q G+ Y ++P T S+R+LLA A ++ EL FD +++ AD+DEEI ++ P Y E + RL KA+YGL QAG WN+ + +T +GF++ DPCV+ K + T+V +HVD++ A A MD + L +K+ D+G R +G I+R+R R L I Q Y+++++++ K A P T+ + P + EP + + +EM+ PY+ +G+LM TRPDI+ V +++ PG T A ++++Y T+D+GI+Y GK +E Y D+D+GA D R S+S ++ G+I+W S+ Q A + E E++A++ A + +++R
Sbjct: 24 APEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGL-TIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRF--KMADCNPVTTPLDPNVKLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGKGETRIRAYYDNFRLEGYSDADWGANPDDRRSISGYAYLVGNGIIAWSSKKQTTVALSSMEAEYMAIAYAARHAIWVR 447
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 229 bits (583), Expect = 3.780e-62 Identity = 144/421 (34.20%), Postives = 228/421 (54.16%), Query Frame = 1
Query: 7 PEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*E--FPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVK--KAS*IPATSRVPTLSKADEP-WNLEKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
PE KW +EM M +N V+ V P VG++ +KRK +G V YK RLVA+GF Q +GV Y +SP SIR+LLA A D E+ D + +F+ + E++ + PE + + +P V +LNK+IYGL QA RCWN + + GF + +++PCV+RK G + ++++VD+IL + ++ LG+ F +KD+G+A + +G I R+R R L + Q Y++ M+ + +++ K IP T L+K+ P ++E M+ PY A+G++M M TRPD++ + +R ++PG AV I++Y TK+ +I+GG L + Y D+ F D S S V L G +SW S Q V A T+E E++A S+A KE +++
Sbjct: 476 PESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDDILIIGNNIPMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGT-VLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRTKEMFLIFGGVEEELTVRCYTDASFQTDRDDSRSQSGFVFTLNGGAVSWKSSKQSVVADSTTESEYIAASDAAKEAAWIK 894
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D) HSP 1 Score: 221 bits (563), Expect = 4.180e-62 Identity = 146/422 (34.60%), Postives = 225/422 (53.32%), Query Frame = 1
Query: 7 PEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGA--VRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEK--VDVKKAS*IPATSRVPTLSKADEPWNL-EKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLRD 1254
P+ NKW + ++E+ M EN V+ P D+ + + +K+K +G V YK RLVA+G+ QV+GV Y +SP S+R++LA A D E+ D + +F+ + EE+ + PE + + A V +L ++IYGLVQA R WN + + GF Q + CV++KV V ++L +VD+IL D +D A L F +KD+G+A + +G I R+R R + + Q Y++ +++K +D K +P V LS A P +K EM PY A+G++M M TRPD+ V V R NPG AV I++Y TKD ++YGG L ++ Y+D+ F LD S + V +L G +SW S Q V A T E E++A SEA E +++++
Sbjct: 26 PDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKVSGSSVAFLIL-YVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGFLPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRPDVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRTKDMFLVYGGDE-ELVVKGYVDASFDTDLDDSKSQTGYVYILNGGAVSWCSCKQSVVAGSTCEAEYMAASEAAHEAIWVKE 444
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU) HSP 1 Score: 229 bits (584), Expect = 9.500e-62 Identity = 149/423 (35.22%), Postives = 231/423 (54.61%), Query Frame = 1
Query: 1 ESPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGA---VRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*I--PATSRVPTLSKADEPWNLEKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
ES E KW + EM + +N + V PKDK + R Y+ K N +YK RLV +GF Q +G+ + +SP +SIR++L+ A T D E+ D + +F+ D++EEI +K P+ + G V RL K++YGL QA R W K + M G+++ D CVF K D ++L++VD+IL KD + ++R +L F +KDMG A+ +G I R+R ++L + Q YV+ ++++ ++ A + P + +K + EK++M+ PY AVG+LM M TRPDIA V TV+R NPG AV I++Y T + +GG L Y DSD G +D+R S S V+ A G ++W SR+Q+ A T+E E +A++EA KE+L+++
Sbjct: 763 ESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGF-LVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLV--GYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVK 1182
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A151S6Y9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S6Y9_CAJCA) HSP 1 Score: 218 bits (556), Expect = 1.110e-61 Identity = 151/428 (35.28%), Postives = 225/428 (52.57%), Query Frame = 1
Query: 1 ESPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIP--------EEY*EFPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVK--KAS*IPATSRVPTLSKADEPWNLEKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
ES E KW + EM + +N Y V PK K + R +K K N YK RLV +GF Q +GV + +SP +SIR +L+ A T D E+ D + F+ D++EEI +K P E+Y V RL K++YGL QA R W K + M +++ D CVF + D ++L++VD++L KD +K+DR +LG F +KDMG A+ +G I R+R ++L + Q Y+++++++ ++ KA P + K +EK M PY AVG+LM M TRPDIA V TV+R NPG AV I++Y T + +GG L Y DSD +D+R S S ++ A GV++W SR+Q+ A T+E E +AL+EA KE+L+++
Sbjct: 16 ESEEKQKWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFKVKQESNSTSPIYKARLVVKGFRQRKGVDFNEIFSPVVRMSSIRTMLSLATTLDLEVEKMDVKTIFLHGDLEEEIYMKQPDGFLIEGKEDY------VCRLRKSLYGLKQAPRQWYKKFESVMCEQDYKKTTSDHCVFVRKFSDDDFIILLLYVDDMLIVGKDVSKIDRLKKQLGESFSMKDMGAAKKILGISIIRDRKDKKLWLSQEHYIQNVLQRFHMENVKAVSTPLAAHFKLSVKQCPSNEVEKINMSRVPYAYAVGSLMYAMVCTRPDIAHAVGTVSRFLSNPGREHWNAVKWILRYLRGTSGLKLYFGGDKPTLV--GYSDSDMAGDIDSRKSTSGYLVKFAGGVVAWQSRLQKCVALSTTEAEFIALTEACKELLWVK 435
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 228 bits (581), Expect = 1.940e-61 Identity = 139/388 (35.82%), Postives = 220/388 (56.70%), Query Frame = 1
Query: 91 PKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPTLSKADEPWNLEKTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
P+ + V ++ + K + GK+ +K RLVA+GF Q+ V Y SP P++ASI+++LA A K L H+D +Q++ A +DEE+ +K+P + + + +AIYGL Q+GR W + + GFEQ K DPCVFRK+VD V +++++VD+IL D+ + A L KF K++G+ + GC I R+ L+I Q Y++SMVE+ DVK +TSR+P AD E E +P REA+G++M ++T +RPD++ V V R P +A+ KI+ Y T+D GI Y + GL + VY+D+ + A + R S+S + + V+S S+ Q + + ++E E++A E VKE LF+R
Sbjct: 776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK------STSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVR 1154 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105192.428.1 >prot_H-elongata_contig105192.428.1 ID=prot_H-elongata_contig105192.428.1|Name=mRNA_H-elongata_contig105192.428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp MRNFPYREAVGALMRMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQback to top mRNA from alignment at H-elongata_contig105192:186..1693+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105192.428.1 ID=mRNA_H-elongata_contig105192.428.1|Name=mRNA_H-elongata_contig105192.428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1508bp|location=Sequence derived from alignment at H-elongata_contig105192:186..1693+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105192:186..1693+ >mRNA_H-elongata_contig105192.428.1 ID=mRNA_H-elongata_contig105192.428.1|Name=mRNA_H-elongata_contig105192.428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig105192:186..1693+ (Himanthalia elongata Himel1 dioecious)back to top |