mRNA_H-elongata_contig105192.428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105192.428.1
Unique NamemRNA_H-elongata_contig105192.428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 225 bits (573), Expect = 5.010e-63
Identity = 144/426 (33.80%), Postives = 236/426 (55.40%), Query Frame = 1
Query:   16 NKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EF---------PGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPT---LSKADEPWNLE-KTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            ++W+K   +E+  ++ N  ++ V +P  +  +G R  +  K  + G+V +YK RLVA+G+ Q  G+ Y   YSP     S+R +LA    +  E+   D + +F+  +++EEI +++PE   E             V  L +++YGL QA R WN  +   +   GFE A  DPCV+ +  +G+ E +V ++VD++L  ++ +A +    A +  KF++KD+G AR  +G  I  +   R L I Q  Y ES+++K   + A   P  + +     L+KADEP   E K +M++ PYR  VG+LM +   TRPDI+  V  ++R  +NPG    +A IK+++Y   TKD GI+Y G   G   E Y D+D+    D R S+S ++LML    + W S  Q+  A  ++E E++ALS+ VKE +++R
Sbjct:   79 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAK--PCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMR 500          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 226 bits (576), Expect = 6.350e-63
Identity = 147/426 (34.51%), Postives = 240/426 (56.34%), Query Frame = 1
Query:   16 NKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPE------EY*EFPG---AVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPT---LSKADEPWNLE-KTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            ++W+K   +E+  ++ N  ++ V +P  +  +G R  +  K  + G+V +YK RLVA+G+ Q  G+ Y   YSP     SIR +LA    +  E+   D + +F+   ++EEI +++ E      E  E  G    V  L +++YGL QA R WN  +   +  +GFE A +DPCV+ +  +G+ E +V ++VD++L  ++ +A +    A +  KF++KDMG AR  +G  I  +   R L I Q  Y ES+++K   + A   P  + +     L+KADEP   E K +M++ PYR  VG+LM ++  TRPDI+  V  ++R  +NPG    +A IK+++Y   TKD GI+Y G   G  +E Y D+D+    D R S+S ++LML    + W S  Q+  A  ++E E++ALS+ VKE +++R
Sbjct:  144 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAK--PCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMR 565          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435)

HSP 1 Score: 223 bits (567), Expect = 9.180e-63
Identity = 144/423 (34.04%), Postives = 225/423 (53.19%), Query Frame = 1
Query:    4 SPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGA--VRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEK--VDVKKAS*IPATSRVPTLSKADEPWNLEKTE-MRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLRD 1254
            SP+  KW +  ++EM  M EN V+  V  P D+  +  +  +K+K   +G V  YK RLVA+GF QV+G+ Y   +SP     S+R++LA A   D E+   D + +F+   ++EE+ +  PE + +  GA  V +L ++IYGLVQA R WN +  + +   GF Q   + C+++KV    V  ++L +VD+IL    D   +D     L   F +KD+G+A + +G  I R+R  R + + Q  Y++ +++K  +D  K   +P    V  LSK   P   E  E M++ PY  A+G++M  M  TRPD+   +    R   NPG     AV  I++Y   TKD  ++YGG    L +  Y+D+ F    D   S +  V  L  G +SW S  Q V A  T E E++A SEA  E +++++
Sbjct:   17 SPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKVSGSSVAFLIL-YVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVLQGV-KLSKTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTAVKNILKYLKRTKDMFLVYGGDK-ELIVNGYVDASFDTDPDDSKSQTGYVFTLNGGAVSWCSSKQSVVAGSTCEAEYIAASEAANEGVWMKE 436          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 229 bits (585), Expect = 9.700e-63
Identity = 149/426 (34.98%), Postives = 242/426 (56.81%), Query Frame = 1
Query:   16 NKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPE------EY*EFPG---AVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPT---LSKADEPWNLE-KTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            ++W+K   +E+  ++ N  ++ V +P  +  +G R  +  K  + G+V +YK RLVA+G+ Q  G++Y   YSP     SIR +LA    +  E+   D + +F+   ++EEI +++ E      E  E  G    V  L +++YGL QA R WN  +   +  +GFE A +DPCV+ +  +G+ E +V ++VD++L  ++ +A +    A +  KF++KDMG AR  +G  I  N   R L I Q  Y ES+++KV  + A   P  + +     L+KADEP   E K +M++ PYR  VG+LM ++  TRPDI+  V  ++R  +NPG    +A IK+++Y   TKD GI+Y G   G  +E Y D+D+    D R S+S ++LML    + W S  Q+  A  ++E E++ALS+ VKE +++R
Sbjct:  388 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAK--PCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMR 809          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 228 bits (582), Expect = 2.320e-62
Identity = 141/427 (33.02%), Postives = 236/427 (55.27%), Query Frame = 1
Query:    4 SPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTV-IGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRV-PTLSKADEPWNLEKTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKS--------CGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            +PEW +W++  + E+  + +   Y     P  +  +G R  Y+ K   +G++ +YK RLVAQGF Q  G+ Y   ++P   T S+R+LLA A  ++ EL  FD   +++ AD+DEEI ++ P  Y E    + RL KA+YGL QAG  WN+ +   +T  +GF++   DPCV+ K     + T+V +HVD++ A A     MD   + L   +K+ D+G  R  +G  I+R+R  R L I Q  Y+++++++   K A   P T+ + P +    EP + + +EM+  PY+  +G+LM     TRPDI+  V  +++    PG T   A  ++++Y   T+D+GI+Y GK             +E Y D+D+GA  D R S+S    ++  G+I+W S+ Q   A  + E E++A++ A +  +++R
Sbjct:   24 APEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGL-TIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRF--KMADCNPVTTPLDPNVKLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGKGETRIRAYYDNFRLEGYSDADWGANPDDRRSISGYAYLVGNGIIAWSSKKQTTVALSSMEAEYMAIAYAARHAIWVR 447          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 229 bits (583), Expect = 3.780e-62
Identity = 144/421 (34.20%), Postives = 228/421 (54.16%), Query Frame = 1
Query:    7 PEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*E--FPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVK--KAS*IPATSRVPTLSKADEP-WNLEKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            PE  KW     +EM  M +N V+  V  P     VG++  +KRK   +G V  YK RLVA+GF Q +GV Y   +SP     SIR+LLA A   D E+   D + +F+   + E++ +  PE + +  +P  V +LNK+IYGL QA RCWN +    +   GF + +++PCV+RK   G   + ++++VD+IL    +   ++     LG+ F +KD+G+A + +G  I R+R  R L + Q  Y++ M+ + +++  K   IP T     L+K+  P  ++E   M+  PY  A+G++M  M  TRPD++  +   +R  ++PG     AV  I++Y   TK+  +I+GG    L +  Y D+ F    D   S S  V  L  G +SW S  Q V A  T+E E++A S+A KE  +++
Sbjct:  476 PESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDDILIIGNNIPMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGT-VLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRTKEMFLIFGGVEEELTVRCYTDASFQTDRDDSRSQSGFVFTLNGGAVSWKSSKQSVVADSTTESEYIAASDAAKEAAWIK 894          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D)

HSP 1 Score: 221 bits (563), Expect = 4.180e-62
Identity = 146/422 (34.60%), Postives = 225/422 (53.32%), Query Frame = 1
Query:    7 PEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGA--VRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEK--VDVKKAS*IPATSRVPTLSKADEPWNL-EKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLRD 1254
            P+ NKW +  ++E+  M EN V+     P D+  +  +  +K+K   +G V  YK RLVA+G+ QV+GV Y   +SP     S+R++LA A   D E+   D + +F+   + EE+ +  PE + +   A  V +L ++IYGLVQA R WN +    +   GF Q   + CV++KV    V  ++L +VD+IL    D   +D   A L   F +KD+G+A + +G  I R+R  R + + Q  Y++ +++K  +D  K   +P    V  LS A  P    +K EM   PY  A+G++M  M  TRPD+   V  V R   NPG     AV  I++Y   TKD  ++YGG    L ++ Y+D+ F   LD   S +  V +L  G +SW S  Q V A  T E E++A SEA  E +++++
Sbjct:   26 PDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKVSGSSVAFLIL-YVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGFLPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRPDVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRTKDMFLVYGGDE-ELVVKGYVDASFDTDLDDSKSQTGYVYILNGGAVSWCSCKQSVVAGSTCEAEYMAASEAAHEAIWVKE 444          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU)

HSP 1 Score: 229 bits (584), Expect = 9.500e-62
Identity = 149/423 (35.22%), Postives = 231/423 (54.61%), Query Frame = 1
Query:    1 ESPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGA---VRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*I--PATSRVPTLSKADEPWNLEKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            ES E  KW    + EM  + +N  +  V  PKDK  +  R  Y+ K   N    +YK RLV +GF Q +G+ +   +SP    +SIR++L+ A T D E+   D + +F+  D++EEI +K P+ +    G    V RL K++YGL QA R W  K  + M   G+++   D CVF K    D   ++L++VD+IL   KD + ++R   +L   F +KDMG A+  +G  I R+R  ++L + Q  YV+ ++++  ++ A  +  P  +     +K    +  EK++M+  PY  AVG+LM  M  TRPDIA  V TV+R   NPG     AV  I++Y   T    + +GG    L    Y DSD G  +D+R S S  V+  A G ++W SR+Q+  A  T+E E +A++EA KE+L+++
Sbjct:  763 ESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGF-LVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLV--GYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVK 1182          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A151S6Y9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S6Y9_CAJCA)

HSP 1 Score: 218 bits (556), Expect = 1.110e-61
Identity = 151/428 (35.28%), Postives = 225/428 (52.57%), Query Frame = 1
Query:    1 ESPEWNKWRKEEEAEMYGMVENCVYRQVARPKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIP--------EEY*EFPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVK--KAS*IPATSRVPTLSKADEPWNLEKTEMRNFPYREAVGALM-RMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            ES E  KW    + EM  + +N  Y  V  PK K  +  R  +K K   N     YK RLV +GF Q +GV +   +SP    +SIR +L+ A T D E+   D +  F+  D++EEI +K P        E+Y      V RL K++YGL QA R W  K  + M    +++   D CVF +    D   ++L++VD++L   KD +K+DR   +LG  F +KDMG A+  +G  I R+R  ++L + Q  Y+++++++  ++  KA   P  +      K      +EK  M   PY  AVG+LM  M  TRPDIA  V TV+R   NPG     AV  I++Y   T    + +GG    L    Y DSD    +D+R S S  ++  A GV++W SR+Q+  A  T+E E +AL+EA KE+L+++
Sbjct:   16 ESEEKQKWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFKVKQESNSTSPIYKARLVVKGFRQRKGVDFNEIFSPVVRMSSIRTMLSLATTLDLEVEKMDVKTIFLHGDLEEEIYMKQPDGFLIEGKEDY------VCRLRKSLYGLKQAPRQWYKKFESVMCEQDYKKTTSDHCVFVRKFSDDDFIILLLYVDDMLIVGKDVSKIDRLKKQLGESFSMKDMGAAKKILGISIIRDRKDKKLWLSQEHYIQNVLQRFHMENVKAVSTPLAAHFKLSVKQCPSNEVEKINMSRVPYAYAVGSLMYAMVCTRPDIAHAVGTVSRFLSNPGREHWNAVKWILRYLRGTSGLKLYFGGDKPTLV--GYSDSDMAGDIDSRKSTSGYLVKFAGGVVAWQSRLQKCVALSTTEAEFIALTEACKELLWVK 435          
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 1.940e-61
Identity = 139/388 (35.82%), Postives = 220/388 (56.70%), Query Frame = 1
Query:   91 PKDKLVVGTRMFYKRKVRQNGKV*KYKCRLVAQGF*QVEGVHYAAKYSPTPATASIRVLLATAVTKDGELRHFDAEQSFVKADIDEEI*IKIPEEY*EFPGAVRRLNKAIYGLVQAGRCWNNKVCNDMTVIGFEQAKEDPCVFRKVVDGDVETVVLVHVDNILAHAKDQAKMDRFAAELGHKFKLKDMGDARHHMGCYITRNRMMRELKIDQHLYVESMVEKVDVKKAS*IPATSRVPTLSKADEPWNLEKTEMRNFPYREAVGALMRMTT-TRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQYPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGVISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLR 1251
            P+ +  V ++  +  K  + GK+  +K RLVA+GF Q+  V Y    SP P++ASI+++LA A  K   L H+D +Q++  A +DEE+ +K+P    +    + +  +AIYGL Q+GR W     + +   GFEQ K DPCVFRK+VD  V  +++++VD+IL    D+   +   A L  KF  K++G+ +   GC I R+     L+I Q  Y++SMVE+ DVK      +TSR+P    AD     E  E   +P REA+G++M ++T +RPD++  V  V R    P     +A+ KI+ Y   T+D GI Y  +  GL + VY+D+ + A  + R S+S +   +   V+S  S+ Q + +  ++E E++A  E VKE LF+R
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK------STSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVR 1154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105192.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q908_9STRA5.010e-6333.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA6.350e-6334.51Retrovirus-related Pol polyprotein from transposon... [more]
UPI00202464359.180e-6334.04hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
A0A6G0QQ26_9STRA9.700e-6334.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V3W8_TRAPU2.320e-6233.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LW24_9ASTR3.780e-6234.20Integrase catalytic domain-containing protein n=2 ... [more]
UPI002025A47D4.180e-6234.60hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
G8DCY4_PHAVU9.500e-6235.22Putative gag/pol polyprotein n=1 Tax=Phaseolus vul... [more]
A0A151S6Y9_CAJCA1.110e-6135.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KSG8_9PHAE1.940e-6135.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105192contigH-elongata_contig105192:186..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1508
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105192.428.1prot_H-elongata_contig105192.428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105192 1035..1469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.2231693-UTR-H-elongata_contig105192:185..10341622929584.2231693-UTR-H-elongata_contig105192:185..1034Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105192 186..1034 +
1691679080.0055747-UTR-H-elongata_contig105192:185..10341691679080.0055747-UTR-H-elongata_contig105192:185..1034Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105192 186..1034 +
1622929584.257845-UTR-H-elongata_contig105192:1469..16931622929584.257845-UTR-H-elongata_contig105192:1469..1693Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105192 1470..1693 +
1691679080.0222042-UTR-H-elongata_contig105192:1469..16931691679080.0222042-UTR-H-elongata_contig105192:1469..1693Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105192 1470..1693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.240378-CDS-H-elongata_contig105192:1034..14691622929584.240378-CDS-H-elongata_contig105192:1034..1469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105192 1035..1469 +
1691679080.0148354-CDS-H-elongata_contig105192:1034..14691691679080.0148354-CDS-H-elongata_contig105192:1034..1469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105192 1035..1469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105192.428.1

>prot_H-elongata_contig105192.428.1 ID=prot_H-elongata_contig105192.428.1|Name=mRNA_H-elongata_contig105192.428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MRNFPYREAVGALMRMTTTRPDIASTVCTVTRLCKNPGTTDTEAVIKIMQ
YPPHTKDWGIIYGGKSCGLCIEVYMDSDFGACLDTRSSMSSVVLMLAKGV
ISWYSRMQEVTASGTSEEEHVALSEAVKEVLFLRDRFRSSWNRR*
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mRNA from alignment at H-elongata_contig105192:186..1693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105192.428.1 ID=mRNA_H-elongata_contig105192.428.1|Name=mRNA_H-elongata_contig105192.428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1508bp|location=Sequence derived from alignment at H-elongata_contig105192:186..1693+ (Himanthalia elongata Himel1 dioecious)
GAATCACCAGAATGGAATAAATGGCGAAAGGAAGAAGAAGCAGAGATGTA TGGTATGGTCGAGAACTGCGTTTATAGGCAGGTGGCTCGGCCGAAAGATA AGCTCGTGGTAGGCACAAGAATGTTCTACAAGCGAAAGGTCAGACAGAAC GGCAAGGTGTAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTCTGACA GGTGGAAGGTGTGCACTACGCGGCAAAGTACTCACCCACACCCGCGACCG CGTCAATCCGGGTGCTTTTGGCAACGGCAGTGACCAAGGACGGAGAGCTG CGCCATTTCGACGCGGAGCAGTCATTCGTGAAGGCAGACATCGACGAAGA AATATAGATCAAGATACCCGAGGAGTACTAGGAGTTTCCGGGGGCAGTGA GACGGCTGAATAAGGCTATATACGGACTCGTACAGGCGGGAAGGTGCTGG AACAACAAGGTCTGCAACGACATGACGGTGATTGGATTCGAGCAGGCAAA GGAGGATCCATGCGTGTTCCGTAAGGTCGTTGACGGCGATGTGGAGACTG TGGTGCTCGTGCACGTGGATAATATTCTTGCCCACGCCAAAGACCAAGCG AAAATGGATAGATTCGCAGCTGAGCTTGGACATAAGTTCAAATTGAAGGA CATGGGCGACGCCAGGCACCACATGGGCTGTTACATCACTAGAAACCGCA TGATGCGCGAGTTGAAGATCGATCAACACTTGTACGTGGAGTCGATGGTG GAAAAGGTCGACGTCAAGAAGGCAAGCTAAATACCGGCTACGTCAAGGGT GCCAACACTTTCAAAGGCGGACGAACCGTGGAACCTGGAGAAAACTGAAA TGAGGAATTTTCCATACAGGGAGGCAGTGGGGGCGCTTATGAGGATGACG ACGACACGACCGGACATTGCGAGCACAGTATGCACTGTGACCAGGTTATG CAAAAACCCTGGGACGACGGATACGGAGGCAGTGATTAAAATCATGCAGT ACCCCCCTCATACAAAGGATTGGGGAATTATATACGGTGGAAAGAGCTGT GGACTCTGCATAGAGGTATACATGGACTCGGATTTCGGTGCCTGTCTGGA TACGAGGTCATCCATGTCGAGTGTGGTGTTGATGCTGGCGAAGGGAGTGA TCAGCTGGTACTCAAGGATGCAAGAGGTGACAGCATCGGGTACCTCGGAG GAAGAGCATGTTGCTTTATCGGAAGCGGTAAAGGAGGTTCTATTTTTGAG AGACAGGTTCAGGAGTTCATGGAACCGTCGATGAAGGTCAGCGAAGTGAA TATGTTCGAGGACAAAGAGGGGGCCATCAAGCTGGCCACCAACAAGCATG TTAGTCGTAGGACAAATCACATTGATGTGAAACATCATATGGTGAGGGAC GCGTCTGACGCGCAAAAGGTTAGAGTAGCGTATGTGAGGTTGGAAGATCA GCACGCGGACTTGCTCACCAAGCCACTAAACACGCAAAGGTTTAACAAGC ACGCTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig105192:186..1693+

>mRNA_H-elongata_contig105192.428.1 ID=mRNA_H-elongata_contig105192.428.1|Name=mRNA_H-elongata_contig105192.428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig105192:186..1693+ (Himanthalia elongata Himel1 dioecious)
ATGAGGAATTTTCCATACAGGGAGGCAGTGGGGGCGCTTATGAGGATGAC
GACGACACGACCGGACATTGCGAGCACAGTATGCACTGTGACCAGGTTAT
GCAAAAACCCTGGGACGACGGATACGGAGGCAGTGATTAAAATCATGCAG
TACCCCCCTCATACAAAGGATTGGGGAATTATATACGGTGGAAAGAGCTG
TGGACTCTGCATAGAGGTATACATGGACTCGGATTTCGGTGCCTGTCTGG
ATACGAGGTCATCCATGTCGAGTGTGGTGTTGATGCTGGCGAAGGGAGTG
ATCAGCTGGTACTCAAGGATGCAAGAGGTGACAGCATCGGGTACCTCGGA
GGAAGAGCATGTTGCTTTATCGGAAGCGGTAAAGGAGGTTCTATTTTTGA
GAGACAGGTTCAGGAGTTCATGGAACCGTCGATGAATGAGGAATTTTCCA
TACAGGGAGGCAGTGGGGGCGCTTATGAGGATGACGACGACACGACCGGA
CATTGCGAGCACAGTATGCACTGTGACCAGGTTATGCAAAAACCCTGGGA
CGACGGATACGGAGGCAGTGATTAAAATCATGCAGTACCCCCCTCATACA
AAGGATTGGGGAATTATATACGGTGGAAAGAGCTGTGGACTCTGCATAGA
GGTATACATGGACTCGGATTTCGGTGCCTGTCTGGATACGAGGTCATCCA
TGTCGAGTGTGGTGTTGATGCTGGCGAAGGGAGTGATCAGCTGGTACTCA
AGGATGCAAGAGGTGACAGCATCGGGTACCTCGGAGGAAGAGCATGTTGC
TTTATCGGAAGCGGTAAAGGAGGTTCTATTTTTGAGAGACAGGTTCAGGA
GTTCATGGAACCGTCGATGA
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