mRNA_H-elongata_contig10397.335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10397.335.1
Unique NamemRNA_H-elongata_contig10397.335.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.830e-31
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEG 665
            AVR VAR  H PA+RHW  ++KI+ YL  T+DL + + ++    L+VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++ G
Sbjct:   56 AVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRESGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSG 197
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.370e-30
Identity = 67/140 (47.86%), Postives = 93/140 (66.43%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPI 656
            AVR VAR  H PAERHW  + KI+ YL +T+DL + + +     L+VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE    +I +  DNQG     +NP+
Sbjct:  102 AVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETRGSSIQVLQDNQGAMALVQNPL 240
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 6.220e-30
Identity = 68/147 (46.26%), Postives = 95/147 (64.63%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH 677
            AVR VAR  H PAERHW  + KI+ YL +T+DL + + +     L VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++     H
Sbjct:  183 AVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKH 328
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KZ43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ43_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.140e-29
Identity = 64/143 (44.76%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEG 665
            AVR VAR  H PA+RHW  ++KI+ YL  T+DL + + +     L+VYVDA YA+ + DRRSVSG+A  +GGT+++  S TQ   +L ++E +Y+A  +GVK ALF + V  F+ PE +  +I +F DNQG     +NP + G
Sbjct:   15 AVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTIVSHGSKTQSIVSLPSTEAEYIAAGEGVKEALFMRVVFSFVAPETSGSSIQVFEDNQGAIALVQNPHSSG 156
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.910e-29
Identity = 67/147 (45.58%), Postives = 94/147 (63.95%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH 677
            AVR VAR  H PA+RHW  ++KI+ YL  T+DL + + +     L+VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS +E +Y+A   GVK ALF +AV  F+ PE +  +I +  DNQG     +NP++ G   H
Sbjct:   60 AVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKH 205
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.620e-29
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH 677
            AVR VAR  H PAERHW  + KI+ YL +T+DL + + +     L+VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++     H
Sbjct:  311 AVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKH 456
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.940e-29
Identity = 69/153 (45.10%), Postives = 100/153 (65.36%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH*RTLSL 695
            AVR VAR  H PA+RHW  ++KI+ YL  T+DL + + +     L+VYVDA YA+ + DRRSV+G+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++ G   H R +S 
Sbjct:  820 AVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHRREISF 971
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.070e-29
Identity = 70/147 (47.62%), Postives = 98/147 (66.67%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH 677
            AVR VAR  H PA+RHW  ++KI+ YL  T+DL + + +     L+VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS++EV+YVA  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++ G   H
Sbjct:  933 AVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSILSLSSTEVEYVAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKH 1078
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.860e-29
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH 677
            AVR VAR  H PAERHW  + KI+ YL +T+DL + + +     L+VYVDA YA+ + DRRSVSG+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++     H
Sbjct:  398 AVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKH 543
[Close]
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.160e-29
Identity = 66/147 (44.90%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  252 AVR*VARQVHDPAERHW*VVRKIIVYLNKTKDLELVFVKDGDQKLSVYVDADYANEDNDRRSVSGVAVMIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPELASETIDLF*DNQG-----ENPINEGDETH 677
            AVR VAR  H PA+RHW  ++KI+ YL  T+DL + + +     L+VYVDA YA+ + D+RSV+G+A  +GGTV++  S TQ   +LS++E +Y+A  +GVK ALF +AVL F+ PE +  +I +  DNQG     +NP++ G   H
Sbjct:  188 AVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKH 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10397.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGY9_9PHAE1.830e-3146.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTI8_9PHAE2.370e-3047.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE6.220e-3046.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ43_9PHAE1.140e-2944.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN5_9PHAE1.910e-2945.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE3.620e-2946.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE3.940e-2945.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KX24_9PHAE4.070e-2947.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE4.860e-2946.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE9.160e-2944.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10397contigH-elongata_contig10397:1377..2462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size1086
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10397.335.1prot_H-elongata_contig10397.335.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10397 1832..2008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.96895-UTR-H-elongata_contig10397:1376..18311622929573.96895-UTR-H-elongata_contig10397:1376..1831Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10397 1377..1831 +
1691679076.2065034-UTR-H-elongata_contig10397:1376..18311691679076.2065034-UTR-H-elongata_contig10397:1376..1831Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10397 1377..1831 +
1622929574.0085053-UTR-H-elongata_contig10397:2008..24621622929574.0085053-UTR-H-elongata_contig10397:2008..2462Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10397 2009..2462 +
1691679076.225479-UTR-H-elongata_contig10397:2008..24621691679076.225479-UTR-H-elongata_contig10397:2008..2462Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10397 2009..2462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.987957-CDS-H-elongata_contig10397:1831..20081622929573.987957-CDS-H-elongata_contig10397:1831..2008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10397 1832..2008 +
1691679076.21838-CDS-H-elongata_contig10397:1831..20081691679076.21838-CDS-H-elongata_contig10397:1831..2008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10397 1832..2008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10397.335.1

>prot_H-elongata_contig10397.335.1 ID=prot_H-elongata_contig10397.335.1|Name=mRNA_H-elongata_contig10397.335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MIGGTVMNASSTTQHCATLSTSEVKYVAMAQGVKTALFTKAVLGFLQPEL
ASETIDLF*
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mRNA from alignment at H-elongata_contig10397:1377..2462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10397.335.1 ID=mRNA_H-elongata_contig10397.335.1|Name=mRNA_H-elongata_contig10397.335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-elongata_contig10397:1377..2462+ (Himanthalia elongata Himel1 dioecious)
GGGGAACTCTCGTGGTACCTAGGGTGCGAATTGTAGTGTGATAGGAAAGA
AGGCGTTCTTCGCGCATCGCAGAGAGCGTTTTTCGAGTCTGGTTTCAGCC
GAGATGGAGTTCACACAGTTTCTGATCTCCCGGCTTTTCAGTCGACAGAT
CTCGGCCCCAGGAGGAACGATGAGCCGACCTGTAATAAACCGGTTCGTGC
GGCAGTTGGTAGTTTGATTTGGTTAGGTGGTATGACGCGACCAGAGTCAA
TGCGGTTAGGTAAGTAGCACGTCAAGTCCACGATCCTGCTGAGAGGCACT
GGTGAGTCGTTAGGAAAATAATCGTGTACCTGAACAAGACGAAAGACCTA
GAGTTGGTGTTCGTAAAGGATGGCGACCAAAAGCTCTCCGTGTATGTAGA
CGCGGATTACGCCAACGAGGATAATGATAGGCGTTCAGTGTCCGGGGTGG
CGGTGATGATAGGAGGCACAGTTATGAATGCTAGTAGTACTACACAGCAC
TGTGCTACGCTTTCTACTAGTGAGGTAAAATACGTAGCAATGGCGCAGGG
AGTAAAGACCGCGTTATTCACTAAGGCCGTGTTGGGTTTCTTGCAGCCAG
AACTTGCCAGTGAGACTATTGACTTATTTTAAGACAACCAAGGAGAAAAC
CCAATCAACGAGGGGGACGAAACACATTGACGTACGTTATCACTTTAAAT
AATGTTTTCTTCGTATGAAGAATCGCGGTTTTTCATACGAACAGCTTTTC
CTGAAGTCATTTTGGGTCGTCAGACGGGTTTTAAAGTAAAGAAATATATA
TATTTATATCCAGAGAGGCCGTTAGGGGGTGATTGGCACTGATCAACCGT
AAAACATTTACTTTGCATCCTTCATCATGTGATGGGGACACCAGACAAGG
GCTTAGAGAGTGAAATGTAGTTAGGAGGGGTTGGTAGGCATAGGTTTTAT
GAGGCAGGGTGCGAGACAGAGTTTGTGTCGTACACAGCGATGTTGTCGAA
TTTAAAGCGTCATCTTGTTGTTGTTGTTTCTCACATTCAGCGTATTGGTT
GCCAACCCGAAAAACCTTTTGCGGTTAGCGCAGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig10397:1377..2462+

>mRNA_H-elongata_contig10397.335.1 ID=mRNA_H-elongata_contig10397.335.1|Name=mRNA_H-elongata_contig10397.335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig10397:1377..2462+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGAGGCACAGTTATGAATGCTAGTAGTACTACACAGCACTGTGC
TACGCTTTCTACTAGTGAGGTAAAATACGTAGCAATGGCGCAGGGAGTAA
AGACCGCGTTATTCACTAAGGCCGTGTTGGGTTTCTTGCAGCCAGAACTT
GCCAGTGAGACTATTGACTTATTTTAAATGATAGGAGGCACAGTTATGAA
TGCTAGTAGTACTACACAGCACTGTGCTACGCTTTCTACTAGTGAGGTAA
AATACGTAGCAATGGCGCAGGGAGTAAAGACCGCGTTATTCACTAAGGCC
GTGTTGGGTTTCTTGCAGCCAGAACTTGCCAGTGAGACTATTGACTTATT
TTAA
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