mRNA_H-elongata_contig103790.320.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103790.320.1
Unique NamemRNA_H-elongata_contig103790.320.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 4.160e-55
Identity = 112/319 (35.11%), Postives = 179/319 (56.11%), Query Frame = 1
Query:   25 YSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYG-GQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQE 978
            Y+PT A   +R+L   A  ++  L +FD +QAF+++D+DE  ++ +P+   +  G + +LNK++YGL Q  R W+      +  +GF Q   D CVFR + +    V +VV VDDI +  + +   D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F V+ G +I    G+  LS+ D+       EE+  +P+RE  G+LMW    TRPDIA+A+RAVAR+C +P   H +A + I  Y++   D  I +  G    L M+ + D+++      RRS+ G +++   G ISW+SR Q+
Sbjct:   12 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQK 322          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.320e-53
Identity = 112/319 (35.11%), Postives = 179/319 (56.11%), Query Frame = 1
Query:   25 YSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYG-GQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQE 978
            Y+PT A   +R+L   A  ++  L +FD +QAF+++D+DE  ++ +P+   +  G + +LNK++YGL Q  R W+      +  +GF Q   D CVFR + +    V +VV VDDI +  + +   D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F V+ G +I    G+  LS+ D+       EE+  +P+RE  G+LMW    TRPDIA+A+RAVAR+C +P   H +A + I  Y++   D  I +  G    L M+ + D+++      RRS+ G +++   G ISW+SR Q+
Sbjct:  186 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQK 496          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 5.950e-52
Identity = 112/319 (35.11%), Postives = 179/319 (56.11%), Query Frame = 1
Query:   25 YSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYG-GQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQE 978
            Y+PT A   +R+L   A  ++  L +FD +QAF+++D+DE  ++ +P+   +  G + +LNK++YGL Q  R W+      +  +GF Q   D CVFR + +    V +VV VDDI +  + +   D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F V+ G +I    G+  LS+ D+       EE+  +P+RE  G+LMW    TRPDIA+A+RAVAR+C +P   H +A + I  Y++   D  I +  G    L M+ + D+++      RRS+ G +++   G ISW+SR Q+
Sbjct:  707 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQK 1017          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 8.390e-52
Identity = 106/311 (34.08%), Postives = 169/311 (54.34%), Query Frame = 1
Query:   49 PIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCE-LCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQE 978
            P +ML   A   + +L +FD EQAF++++++E  Y+ +P+      G + +L K++YGL Q  R W+      + A+GFEQ   D CVFR + D    +++VV VDDI A  + +   D+F  +L +   +K++G+ R+Y GC   RN++   L I Q  + + +  ++ V  G  +  +SGV  LS  D        E   +FP+RE  G+LMW    TRPDIA+A+RAVAR+C +P   H  A M I  Y      + I++     E   ++ Y D++F      RRS+ G ++    G +SW+SR Q+
Sbjct:   44 PAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDAD------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQK 346          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.180e-51
Identity = 117/326 (35.89%), Postives = 182/326 (55.83%), Query Frame = 1
Query:    4 GVHYTVKYSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQEV 981
             V Y    SP P++  I+++L  A  K   L+++D +QA+  A +DE+ ++++P         + +  +AIYGL Q+GR W       +   GFEQ K DPCVFRK+VD+   +++V+ VDDIL     +   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S+I AT G     K       +E EE  ++P REA G++MW    +RPD++ A+RAVAR    P   H  A+ KI  YL   +D  I Y  +G  L +  Y D+++    D RRS+ G    +   V+S  S+ Q +
Sbjct:  815 NVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSI 1130          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.290e-51
Identity = 117/326 (35.89%), Postives = 182/326 (55.83%), Query Frame = 1
Query:    4 GVHYTVKYSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQEV 981
             V Y    SP P++  I+++L  A  K   L+++D +QA+  A +DE+ ++++P         + +  +AIYGL Q+GR W       +   GFEQ K DPCVFRK+VD+   +++V+ VDDIL     +   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S+I AT G     K       +E EE  ++P REA G++MW    +RPD++ A+RAVAR    P   H  A+ KI  YL   +D  I Y  +G  L +  Y D+++    D RRS+ G    +   V+S  S+ Q +
Sbjct: 1194 NVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSI 1509          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.320e-51
Identity = 117/326 (35.89%), Postives = 182/326 (55.83%), Query Frame = 1
Query:    4 GVHYTVKYSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQEV 981
             V Y    SP P++  I+++L  A  K   L+++D +QA+  A +DE+ ++++P         + +  +AIYGL Q+GR W       +   GFEQ K DPCVFRK+VD+   +++V+ VDDIL     +   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S+I AT G     K       +E EE  ++P REA G++MW    +RPD++ A+RAVAR    P   H  A+ KI  YL   +D  I Y  +G  L +  Y D+++    D RRS+ G    +   V+S  S+ Q +
Sbjct: 1357 NVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSI 1672          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.400e-51
Identity = 117/326 (35.89%), Postives = 181/326 (55.52%), Query Frame = 1
Query:    4 GVHYTVKYSPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQEV 981
             V Y    SP P++  I+++L  A  K   L+++D +QA+  A +DE+ ++++P         + +  +AIYGL Q+GR W       +   GFEQ K DPCVFRK+VD    +++V+ VDDIL     +   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S+I AT G     K       +E EE  ++P REA G++MW    +RPD++ A+RAVAR    P   H  A+ KI  YL   +D  I Y  +G  L +  Y D+++    D RRS+ G    +   V+S  S+ Q +
Sbjct: 1214 NVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSI 1529          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.880e-49
Identity = 110/318 (34.59%), Postives = 176/318 (55.35%), Query Frame = 1
Query:   28 SPTPATLPIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQEV 981
            SP P++  I+++L  A  K   L+++D +QA+  A +DE+ ++++P         + +  +AIYGL Q+GR W       +   GFEQ K DPCVFRK+VD+   +++V+ VDDIL     +   +  A+ L +KF  K++G+ +++ GC I R+  A  L+I Q  Y++SMVE+FDVK  S+I AT G     K ++ +  +       +P REA G++MW    +RPD++ A+RAVAR    P   H  A+ KI  YL   +D  I Y  +G  L +  Y D+ +    D RRS+      +   V+S  S+ + +
Sbjct:  414 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSI 721          
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 4.320e-49
Identity = 106/311 (34.08%), Postives = 169/311 (54.34%), Query Frame = 1
Query:   49 PIRMLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLNKAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVVRVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRKFPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYLLHAKDWRIAYGGQGCE-LCMKAYTDSNFGPCLDTRRSILGAVLILVKGVISWYSRMQE 978
            P +ML   A   + +L +FD EQAF++++++E  Y+ +P+      G + +L K++YGL Q  R W+      + A+GFEQ   D CVFR + D    +++VV VDDI A  + +   D+F  +L +   +K++G+ R+Y GC   RN++   L I Q  + + +  ++ V  G  +  +SGV  LS  D        E   +FP+RE  G+LMW    TRPDIA+A+RAVAR+C +P   H  A M I  Y      + I++     E   ++ Y D++F      RRS+ G ++    G +SW+SR Q+
Sbjct: 1380 PAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDAD------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQK 1682          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103790.320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE4.160e-5535.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.320e-5335.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE5.950e-5235.11Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JFG2_9PHAE8.390e-5234.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.180e-5135.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.290e-5135.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.320e-5135.89Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE2.400e-5135.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE3.880e-4934.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE4.320e-4934.08Integrase catalytic domain-containing protein n=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103790contigH-elongata_contig103790:485..1710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue2.4e-40
Seed eggNOG ortholog67593.Physo139221
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1226
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103790.320.1prot_H-elongata_contig103790.320.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103790 682..1653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.6885424-UTR-H-elongata_contig103790:484..6811622929572.6885424-UTR-H-elongata_contig103790:484..681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103790 485..681 -
1691679075.7338912-UTR-H-elongata_contig103790:484..6811691679075.7338912-UTR-H-elongata_contig103790:484..681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103790 485..681 -
1622929572.7215695-UTR-H-elongata_contig103790:1653..17101622929572.7215695-UTR-H-elongata_contig103790:1653..1710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103790 1654..1710 -
1691679075.7528877-UTR-H-elongata_contig103790:1653..17101691679075.7528877-UTR-H-elongata_contig103790:1653..1710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103790 1654..1710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.703714-CDS-H-elongata_contig103790:681..16531622929572.703714-CDS-H-elongata_contig103790:681..1653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103790 682..1653 -
1691679075.7452743-CDS-H-elongata_contig103790:681..16531691679075.7452743-CDS-H-elongata_contig103790:681..1653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103790 682..1653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103790.320.1

>prot_H-elongata_contig103790.320.1 ID=prot_H-elongata_contig103790.320.1|Name=mRNA_H-elongata_contig103790.320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp
MLLTTAVAKDGELHYFDAEQAFLKADIDEKSYIEIPKEYQKFPGAVGRLN
KAIYGLVQTGRCWNKKFYGDMAAIGFEQAKTDPCVFRKVVDDEAEVVVVV
RVDDILAHTKYKATMDRFATELEQKFKLKDMGDARYYMGCHITRNRKARE
LKIDQHLYVESMVEKFDVKKGSKIAATSGVPTLSKTDESRNPKEKEEMRK
FPYREAAGALMWTEAMTRPDIASALRAVARFCQNPGPAHKKAVMKITQYL
LHAKDWRIAYGGQGCELCMKAYTDSNFGPCLDTRRSILGAVLILVKGVIS
WYSRMQEVSIVPQRRSTLLYQRR*
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mRNA from alignment at H-elongata_contig103790:485..1710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103790.320.1 ID=mRNA_H-elongata_contig103790.320.1|Name=mRNA_H-elongata_contig103790.320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-elongata_contig103790:485..1710- (Himanthalia elongata Himel1 dioecious)
GAAGGGGTGCATTATACGGTAAAATATTCGCCCACGCCAGCGACTTTGCC AATCCGGATGCTTTTGACAACGGCAGTGGCCAAGGATGGAGAGCTGCACT ATTTCGACGCGGAGCAGGCATTCTTGAAGGCGGACATCGATGAGAAGTCG TATATTGAGATCCCCAAGGAGTACCAGAAGTTTCCGGGGGCAGTGGGACG GCTGAACAAAGCCATTTACGGACTCGTACAGACGGGGAGGTGTTGGAACA AGAAGTTTTACGGCGATATGGCGGCAATTGGATTCGAGCAGGCAAAGACG GATCCGTGCGTGTTTCGTAAGGTCGTTGACGACGAGGCGGAAGTGGTGGT GGTCGTACGCGTGGACGATATTCTTGCTCACACCAAATACAAAGCGACAA TGGATAGATTCGCGACTGAGCTTGAACAAAAGTTCAAATTGAAGGACATG GGCGACGCCAGGTACTACATGGGTTGTCACATTACTAGGAACCGCAAGGC GCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAAA AGTTTGACGTTAAGAAAGGAAGCAAGATAGCGGCTACTTCGGGGGTGCCA ACACTCTCAAAGACTGACGAGTCGCGGAACCCGAAGGAGAAGGAGGAAAT GAGGAAGTTTCCATACCGGGAGGCAGCGGGGGCGCTTATGTGGACAGAGG CGATGACACGGCCGGATATTGCGAGCGCATTACGCGCTGTGGCCCGGTTC TGCCAAAACCCTGGACCGGCGCATAAGAAGGCAGTTATGAAGATTACGCA GTATCTCCTTCACGCGAAGGATTGGAGGATAGCATACGGTGGACAAGGCT GTGAACTCTGCATGAAGGCATACACGGACTCAAATTTTGGACCCTGTTTA GATACGAGACGATCGATCTTGGGTGCGGTGTTGATACTGGTGAAGGGGGT GATCAGCTGGTACTCAAGGATGCAAGAAGTGAGCATCGTACCTCAGAGGC GGAGTACGTTGCTTTATCAGAGGCGGTAAAGGAGGTTCTATTTTTGAGAC AGGTCCAGGAGTTTATGGAACCTTCGATGAGGGTCGGTGCAGTGAATATG TTGAAGGACAACGAGGGGGCCCTGGCCACCAACAAGCATGCTAGTCGTAG TACAAAGCACATTGATGTGAAACATCATATGGTGAGGAACGTGTCTGACG CGCAAAAGGTTAGAGTAGCGTATGTG
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Coding sequence (CDS) from alignment at H-elongata_contig103790:485..1710-

>mRNA_H-elongata_contig103790.320.1 ID=mRNA_H-elongata_contig103790.320.1|Name=mRNA_H-elongata_contig103790.320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig103790:485..1710- (Himanthalia elongata Himel1 dioecious)
ATGCTTTTGACAACGGCAGTGGCCAAGGATGGAGAGCTGCACTATTTCGA
CGCGGAGCAGGCATTCTTGAAGGCGGACATCGATGAGAAGTCGTATATTG
AGATCCCCAAGGAGTACCAGAAGTTTCCGGGGGCAGTGGGACGGCTGAAC
AAAGCCATTTACGGACTCGTACAGACGGGGAGGTGTTGGAACAAGAAGTT
TTACGGCGATATGGCGGCAATTGGATTCGAGCAGGCAAAGACGGATCCGT
GCGTGTTTCGTAAGGTCGTTGACGACGAGGCGGAAGTGGTGGTGGTCGTA
CGCGTGGACGATATTCTTGCTCACACCAAATACAAAGCGACAATGGATAG
ATTCGCGACTGAGCTTGAACAAAAGTTCAAATTGAAGGACATGGGCGACG
CCAGGTACTACATGGGTTGTCACATTACTAGGAACCGCAAGGCGCGCGAG
CTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTTGA
CGTTAAGAAAGGAAGCAAGATAGCGGCTACTTCGGGGGTGCCAACACTCT
CAAAGACTGACGAGTCGCGGAACCCGAAGGAGAAGGAGGAAATGAGGAAG
TTTCCATACCGGGAGGCAGCGGGGGCGCTTATGTGGACAGAGGCGATGAC
ACGGCCGGATATTGCGAGCGCATTACGCGCTGTGGCCCGGTTCTGCCAAA
ACCCTGGACCGGCGCATAAGAAGGCAGTTATGAAGATTACGCAGTATCTC
CTTCACGCGAAGGATTGGAGGATAGCATACGGTGGACAAGGCTGTGAACT
CTGCATGAAGGCATACACGGACTCAAATTTTGGACCCTGTTTAGATACGA
GACGATCGATCTTGGGTGCGGTGTTGATACTGGTGAAGGGGGTGATCAGC
TGGTACTCAAGGATGCAAGAAGTGAGCATCGTACCTCAGAGGCGGAGTAC
GTTGCTTTATCAGAGGCGGTAAATGCTTTTGACAACGGCAGTGGCCAAGG
ATGGAGAGCTGCACTATTTCGACGCGGAGCAGGCATTCTTGAAGGCGGAC
ATCGATGAGAAGTCGTATATTGAGATCCCCAAGGAGTACCAGAAGTTTCC
GGGGGCAGTGGGACGGCTGAACAAAGCCATTTACGGACTCGTACAGACGG
GGAGGTGTTGGAACAAGAAGTTTTACGGCGATATGGCGGCAATTGGATTC
GAGCAGGCAAAGACGGATCCGTGCGTGTTTCGTAAGGTCGTTGACGACGA
GGCGGAAGTGGTGGTGGTCGTACGCGTGGACGATATTCTTGCTCACACCA
AATACAAAGCGACAATGGATAGATTCGCGACTGAGCTTGAACAAAAGTTC
AAATTGAAGGACATGGGCGACGCCAGGTACTACATGGGTTGTCACATTAC
TAGGAACCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGG
AGTCGATGGTGGAAAAGTTTGACGTTAAGAAAGGAAGCAAGATAGCGGCT
ACTTCGGGGGTGCCAACACTCTCAAAGACTGACGAGTCGCGGAACCCGAA
GGAGAAGGAGGAAATGAGGAAGTTTCCATACCGGGAGGCAGCGGGGGCGC
TTATGTGGACAGAGGCGATGACACGGCCGGATATTGCGAGCGCATTACGC
GCTGTGGCCCGGTTCTGCCAAAACCCTGGACCGGCGCATAAGAAGGCAGT
TATGAAGATTACGCAGTATCTCCTTCACGCGAAGGATTGGAGGATAGCAT
ACGGTGGACAAGGCTGTGAACTCTGCATGAAGGCATACACGGACTCAAAT
TTTGGACCCTGTTTAGATACGAGACGATCGATCTTGGGTGCGGTGTTGAT
ACTGGTGAAGGGGGTGATCAGCTGGTACTCAAGGATGCAAGAAGTGAGCA
TCGTACCTCAGAGGCGGAGTACGTTGCTTTATCAGAGGCGGTAA
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