mRNA_H-elongata_contig103711.310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103711.310.1
Unique NamemRNA_H-elongata_contig103711.310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 444 bits (1142), Expect = 5.800e-136
Identity = 252/546 (46.15%), Postives = 335/546 (61.36%), Query Frame = 1
Query:    1 RQGPSTPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTPPPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVDIARLSRTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQ----LVGHFEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVI---AAPGANAAGLASPD----------------EARLPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569
            RQG     ++  RA  L H+RGG++KAAS L++P + PRN  TL  LR K P E    IAEA   A      PP G    I  +++PF    +   IR+ N Q +PGPSGLR   LQ     +L   IA+L   IF    LP  FW LHT +NLS +G K RP+A GD+FRRI+G +  +Q    L  HFEP+ Q+GVA PGG +L+A    L   +G  +L++D +NAFNS+ R A LPALA ++P    YA N+YAR+PPKLL+  D+G  AVI SA GVQQGCNLG LC+SAG + LL+ FR NPPV GA +  F+DD+ +LLP   A +  A    TTW+Q   + +G+ LNR+KS++L   G    + P   R  LE T+L+VAEGGMR++GV VG  +Y +       RGEP  LL+E+A ++DAQAS QILR SAA R  F+LR++PPD+TK    EFD+ +E +L T++   + PG +A    + +                +ARLP+REGG G+ S+ DI   AFIG QALVLARA+
Sbjct: 1074 RQGEEA--SKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSR-IEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGM-AVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARAL 1615          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 410 bits (1053), Expect = 2.210e-133
Identity = 242/543 (44.57%), Postives = 322/543 (59.30%), Query Frame = 1
Query:   16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVD-IARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR--------------------LPIREGGYGLTSSADIRDAAFIGSQALVLAR 1563
            T + R+ RA +L HE GGITKAASALISP  +PRN  TL  LR+  P EDP  IA A   + K A +  K      +AE D+PFE   I   ++K N Q+APGP GLR  YLQ     D   + +A  S  +F   + LP  FW LHT +NLS LG K RP+A G V RRII   F  Q  G     FE   Q G   PGG +++A   +L   +G TILSFDGKNA+NS+ R + LPA+AT  P    Y  N+YAR   KLLF M++G+  V+ S RGVQQGCNLGG  F  G + +++ F + PPV GA +  +VDD+ + LPP  A++ +AIA  T W+Q      GIEL+  KS+VL   G   ++L   ++R L +T LSVAEGGM ++GV VGTE +QR FV  F RG PA+L+R L+ ++D QAS+Q+LRLS   R   +LRT+ P IT     E D ++ W+++ ++    AN  G+ + +E R                    LPIREGG G+TSS  IR++AF+  QALV ++
Sbjct:   37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 579          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 9.990e-126
Identity = 234/546 (42.86%), Postives = 322/546 (58.97%), Query Frame = 1
Query:   16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVD-IARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR---------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569
            T + R+ RA +L HE GGITKAASALISP  +PRN  TL  LR+  P EDP  IA A   + K A +  K      +AE D+PFE   I   ++K N Q+APGP GLR  YLQ     D   + +A  S  +F   + LP  FW LHT +NLS LG K RP+A G V RRII   F +Q  G     FE   Q G   PGG +++A   +L   +G TILSFDGKNA+NS+ R + LPA+AT  P    Y  N+YAR   KLLF M++G+  V+ S RGVQQGCNLGG  F  G + +++ F + PPV G  +  +VDD+   LPP  A++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L   +++ L +  LSV EGGM V+G+ VGTEE+QR FV    RG+PA+L+  LA ++D QAS+Q+LRLS   R   +LRT+ P IT +  +  D M+ W+++ ++    A++  + +  E R                     LP+REGG G+TS+  IR++AF+  QALV +++V
Sbjct:   37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSV 582          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 1.850e-124
Identity = 235/546 (43.04%), Postives = 322/546 (58.97%), Query Frame = 1
Query:   16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQ-DVRDDDLEVDIARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR---------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569
            T + R+ RA +L HE GGITKAASALISP  +PRN  TL  LR+  P EDP  IA A   + K A +  K      +AE D+PFE   I   ++K N Q+APGP GLR  YLQ     D     +A  S  +F   + LP  FW LHT +NLS LG K RP+A G V RRII   F +Q  G     FE   Q G   PGG +++A   +L   +G TILSFDGKNA+NS+ R + LPA+AT  P    Y  N+YAR   KLLF M++G+  V+ S RGVQQGCNLGG  F  G + +++ F + PPV G  +  +VDD+   LPP  A++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L   +++ L +  LSVAEGGM V+G+ VGTEE+QR FV    RG+PA+L+  LA ++D QAS+Q+LRLS   R   +LRT+ P IT +  +  D M+ W+++ ++    A++  + +  E R                     LP+REGG G+TS+  IR++AF+  QALV +++V
Sbjct:   37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSV 582          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 1.400e-101
Identity = 182/415 (43.86%), Postives = 251/415 (60.48%), Query Frame = 1
Query:  397 RTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGL-------ASP---------DEAR----LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569
            +  +  + LP  FW LHT +NLS LG K RP+A G V RRII   F +Q  G     FE   Q G   PGG +++A   +L   +G TILSFDGKNA+NS+ R + LPA+AT  P  + Y  N+YAR   KLLF M++G+  V+ S RGVQQGCNLGG  F  G + +++ F + PPV GA +  +VDD+ + LPP  A++ +AIA  T W+Q      GIEL+  KS VL   G   ++L   ++R L +T LSVAEGGM ++GV VGTE +QR FV  F RG PA+L+  L+ ++D Q S+Q+LR+S   R   +LRT+ P IT     E D ++ W+++ ++    AN  G+       A+P         D AR    LPIREGG G+TSS  IR++AF+  QALV +++V
Sbjct:   15 KVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSV 429          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 1.130e-92
Identity = 173/416 (41.59%), Postives = 249/416 (59.86%), Query Frame = 1
Query:  397 RTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR---------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569
            +  +  + LP   W LHT +NLS LG K RP+A G V RRII   F +Q  G     FE   Q G   PGG +++A   +L   +G TILSFDGKNA+NS+ R + LPA+AT+ P    Y  N+YAR   KLLF M++G+  V+ S RGVQQGCNLGG  F  G + +++ F + PPV G  +  +VDD+   LPP  A++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L   +++ L +  LSVAEGGM V+G+ VGTEE+QR FV    RG+PA+L+  LA ++D QAS+Q+LRLS   R   +LRT+ P IT +  +  D M+ W+++ ++    A++  + +  E R                     LP+REGG G+TS+  IR++AF+  QALV +++V
Sbjct:   15 KVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSV 430          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 2.290e-86
Identity = 165/361 (45.71%), Postives = 215/361 (59.56%), Query Frame = 1
Query:   16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVD-IARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVL 1077
            T + R+ RA +L HE GGITKAASALISP  +PRN  TL  LR+  P EDP  IA A   + K A +  +      +AE D+PFE   I   ++K N Q+APGP GLR  YLQ     D   + +A  S  +F   + LP  FW LHT +NLS LG K RP+A G V RRII   F +Q  G     FE   Q G   PGG +++A   +L   +G TILSFDGKNA+NS+ R + LPA+AT  P    Y  N+YAR   KLLF M++G+  V+ S RGVQQGCNLGG  F  G + +++ F + PPV G  +  +VDD+   LPP  A++ +AI+  T W+Q+     GIEL+  KS+VL
Sbjct:   37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 7.570e-64
Identity = 119/278 (42.81%), Postives = 170/278 (61.15%), Query Frame = 1
Query:  790 MDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR--------------------LPIREGGYGLTSSADIRDAAFIGSQALVLAR 1563
            M++G+  ++ S RGVQQGCNLGG  FS G +  ++ F D PPV GA +  +VDD+ + LPP  A++ +AIA  T W+Q      GIEL+  KS+VL   G   ++L   ++R L +T LSVAEGGM ++GV VGTE +QR FV  F RG PA+L+R L+ ++D QAS+Q+LRLS   R   +LRT+ P IT     E D ++ W+++ ++    AN  G+ + +E R                    LPIREGG G+TSS  IR++AF+  QALV ++
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 278          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 6.290e-48
Identity = 100/247 (40.49%), Postives = 146/247 (59.11%), Query Frame = 1
Query:  889 LQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR--------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569
            ++ F D PPV GA +  +VDD+++ LPP  A++ +AIA  T W+Q       IEL+  KS+VL   G   ++L   ++R L +T LSVAEGGM ++GV VGTE +QR FV  F RG PA+L+R L+ ++D QAS+Q+LRLS   R   +LRT  P IT     E D ++ W+++ ++    AN  G+ + +E R                    LPIREGG  +T S  IR++AF+  QALV +++V
Sbjct:    1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAFVAGQALVFSKSV 247          
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 6.760e-46
Identity = 144/477 (30.19%), Postives = 219/477 (45.91%), Query Frame = 1
Query:   16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEA--KARAAKYAHEPPKGTPPPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDV------RDDDLEVDIARLSRTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRII--GTI--FSKQLVGHFEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGF-VEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSL 1407
            TP+ +  RAA+     GG+  AA AL++   +P N  T + L+ K P EDP  + +A  +A+AA    E     P    E +  F+P  +   I   +S +  G  G R  +L+ +      R++      +   R I      PP FW L   S+L  LG K RPV  G  +RR+I  GT+  +  +L   F   +Q GVA  GG + +A    L    G  ++  D  NAFN+  R A +   A  VP   GY    Y   P K ++ MD+G    I+   GVQQG  +G   F    + ++ + R      G  +  ++DDI++      A++ + I         E EA+GI +NR KS  L   G   A  PA +RR+L +  L +AE G+ V+GV +GT+ Y     ++    G   KL R L  M D Q +  +   S   R+ ++ R +   + +   E  D M+ W L
Sbjct:  307 TPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETE--FDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVD----ELEAVGIIVNRGKSSALHPPGRDVA--PA-ERRLLGDAGLPIAEEGITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERGINHKLVRGACERLDNMVMWVL 774          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN5.800e-13646.15Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KGJ4_9PHAE2.210e-13344.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE9.990e-12642.86Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE1.850e-12443.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE1.400e-10143.86Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE1.130e-9241.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE2.290e-8645.71Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K541_9PHAE7.570e-6442.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JL76_9PHAE6.290e-4840.49Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE6.760e-4630.19Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103711contigH-elongata_contig103711:659..2314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score109.0
Seed ortholog evalue6.9e-21
Seed eggNOG ortholog400682.PAC_15702732
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1593
Cds size1593
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.0035958-CDS-H-elongata_contig103711:658..7871622929572.0035958-CDS-H-elongata_contig103711:658..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103711 659..787 -
1691679075.513866-CDS-H-elongata_contig103711:658..7871691679075.513866-CDS-H-elongata_contig103711:658..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103711 659..787 -
1622929572.0215812-CDS-H-elongata_contig103711:850..23141622929572.0215812-CDS-H-elongata_contig103711:850..2314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103711 851..2314 -
1691679075.5228388-CDS-H-elongata_contig103711:850..23141691679075.5228388-CDS-H-elongata_contig103711:850..2314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103711 851..2314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103711.310.1prot_H-elongata_contig103711.310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103711 659..2314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103711.310.1

>prot_H-elongata_contig103711.310.1 ID=prot_H-elongata_contig103711.310.1|Name=mRNA_H-elongata_contig103711.310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=531bp
RQGPSTPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDK
PPREDPATIAEAKARAAKYAHEPPKGTPPPIAEIDQPFEPSAIGDAIRKV
NSQTAPGPSGLRHCYLQDVRDDDLEVDIARLSRTIFKSEILPPLFWALHT
GSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGHFEPKEQHGVACPGGF
DLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAV
NLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRF
RDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIE
LNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEE
YQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVP
PDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEARLPIREGGYGL
TSSADIRDAAFIGSQALVLARAVAKVARSDV
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mRNA from alignment at H-elongata_contig103711:659..2314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103711.310.1 ID=mRNA_H-elongata_contig103711.310.1|Name=mRNA_H-elongata_contig103711.310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1656bp|location=Sequence derived from alignment at H-elongata_contig103711:659..2314- (Himanthalia elongata Himel1 dioecious)
AGACAAGGACCGAGCACGCCCGAAACCCGCCGGCTGCGAGCAGCGAAGTT GGTGCACGAGCGGGGAGGGATCACCAAGGCAGCAAGTGCACTCATATCCC CCGACGCGGCCCCGAGAAACGGAATCACCCTGAGCATCCTGCGAGACAAG CCCCCCAGGGAGGACCCCGCCACCATCGCCGAAGCCAAAGCGAGGGCCGC GAAGTACGCTCACGAGCCGCCCAAGGGGACACCGCCCCCAATCGCCGAGA TCGACCAACCCTTCGAGCCGAGCGCTATCGGCGACGCCATCAGGAAGGTC AACTCTCAGACTGCGCCCGGTCCATCGGGTCTGCGCCACTGCTACCTGCA GGATGTACGGGACGACGACTTGGAAGTAGACATCGCTAGGCTGTCACGCA CCATATTCAAGAGCGAAATCTTACCGCCCCTGTTTTGGGCACTTCACACA GGCTCCAACCTTTCTACGCTGGGAGCAAAAGCAAGGCCGGTTGCGTGCGG CGACGTCTTTCGCCGGATTATCGGAACAATTTTCAGCAAGCAGTTGGTCG GACACTTCGAGCCGAAGGAGCAGCACGGCGTCGCCTGCCCAGGTGGATTC GATCTCATGGCTCGGGCCGTCAGCCTCGGCTTTGCCGAGGGGTGCACCAT TCTGTCATTCGACGGCAAGAATGCTTTCAACTCTATCTACCGCCGCGCGT TCTTACCGGCCCTGGCAACGGTGGTCCCGGTGGCATCCGGTTACGCTGTG AACCTGTACGCACGAGATCCGCCCAAGCTACTCTTCGCAATGGACAACGG CACTACGGCGGTCATCGACTCGGCCCGAGGAGTGCAGCAAGGATGCAACC TAGGTGGATTATGCTTTAGCGCGGGGGGGATCTCTCTGCTGCAGCGATTC CGAGACAACCCGCCGGTGGAAGGTGCGTCGATATTTTGCTTCGTTGACGA CATCAACATTCTCCTGCCGCCGGCAAAGGCACAAGACGCCGAAGCCATCG CGAAAGCCACAACGTGGGTCCAGAAGGAGCGGGAAGCGATAGGCATCGAG CTCAACCGCGCCAAGTCGCAGGTGCTGCTGGCCAGGGGCGCCAGCGCCGC AACCTTACCCGCCGGGCAGCGTCGGATTCTGGAGGAGACCGAGCTGTCCG TAGCGGAAGGCGGCATGAGGGTCCTTGGGGTCGCGGTCGGCACGGAGGAA TACCAGCGGGGGTTTGTGGAGGCCTTCATGAGAGGGGAGCCGGCTAAACT GCTGCGGGAGCTCGCGCCGATGGAAGATGCCCAAGCCAGCTTCCAGATCT TGCGGCTATCGGCTGCCGTCCGTACGACCTTCATTCTACGCACTGTTCCC CCGGACATCACGAAAGCTCCGATGGAAGAGTTCGACCGCATGCTCGAGTG GAGTTTAGCGACCGTCATTGCTGCCCCCGGAGCGAACGCGGCAGGGCTCG CATCCCCCGATGAAGTCCGAGACGACCCATCGGCTTTTCAGTGGCAGCAT CTCCTAAGAAAAGACGCCATTGCCCAGGCACGCCTACCAATCCGGGAGGG AGGATACGGTCTAACCAGTAGCGCCGACATCCGCGATGCCGCCTTCATCG GCAGCCAGGCGCTTGTTCTAGCGCGAGCAGTGGCGAAGGTTGCGAGGTCG GACGTG
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Coding sequence (CDS) from alignment at H-elongata_contig103711:659..2314-

>mRNA_H-elongata_contig103711.310.1 ID=mRNA_H-elongata_contig103711.310.1|Name=mRNA_H-elongata_contig103711.310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3186bp|location=Sequence derived from alignment at H-elongata_contig103711:659..2314- (Himanthalia elongata Himel1 dioecious)
AGACAAGGACCGAGCACGCCCGAAACCCGCCGGCTGCGAGCAGCGAAGTT
GGTGCACGAGCGGGGAGGGATCACCAAGGCAGCAAGTGCACTCATATCCC
CCGACGCGGCCCCGAGAAACGGAATCACCCTGAGCATCCTGCGAGACAAG
CCCCCCAGGGAGGACCCCGCCACCATCGCCGAAGCCAAAGCGAGGGCCGC
GAAGTACGCTCACGAGCCGCCCAAGGGGACACCGCCCCCAATCGCCGAGA
TCGACCAACCCTTCGAGCCGAGCGCTATCGGCGACGCCATCAGGAAGGTC
AACTCTCAGACTGCGCCCGGTCCATCGGGTCTGCGCCACTGCTACCTGCA
GGATGTACGGGACGACGACTTGGAAGTAGACATCGCTAGGCTGTCACGCA
CCATATTCAAGAGCGAAATCTTACCGCCCCTGTTTTGGGCACTTCACACA
GGCTCCAACCTTTCTACGCTGGGAGCAAAAGCAAGGCCGGTTGCGTGCGG
CGACGTCTTTCGCCGGATTATCGGAACAATTTTCAGCAAGCAGTTGGTCG
GACACTTCGAGCCGAAGGAGCAGCACGGCGTCGCCTGCCCAGGTGGATTC
GATCTCATGGCTCGGGCCGTCAGCCTCGGCTTTGCCGAGGGGTGCACCAT
TCTGTCATTCGACGGCAAGAATGCTTTCAACTCTATCTACCGCCGCGCGT
TCTTACCGGCCCTGGCAACGGTGGTCCCGGTGGCATCCGGTTACGCTGTG
AACCTGTACGCACGAGATCCGCCCAAGCTACTCTTCGCAATGGACAACGG
CACTACGGCGGTCATCGACTCGGCCCGAGGAGTGCAGCAAGGATGCAACC
TAGGTGGATTATGCTTTAGCGCGGGGGGGATCTCTCTGCTGCAGCGATTC
CGAGACAACCCGCCGGTGGAAGGTGCGTCGATATTTTGCTTCGTTGACGA
CATCAACATTCTCCTGCCGCCGGCAAAGGCACAAGACGCCGAAGCCATCG
CGAAAGCCACAACGTGGGTCCAGAAGGAGCGGGAAGCGATAGGCATCGAG
CTCAACCGCGCCAAGTCGCAGGTGCTGCTGGCCAGGGGCGCCAGCGCCGC
AACCTTACCCGCCGGGCAGCGTCGGATTCTGGAGGAGACCGAGCTGTCCG
TAGCGGAAGGCGGCATGAGGGTCCTTGGGGTCGCGGTCGGCACGGAGGAA
TACCAGCGGGGGTTTGTGGAGGCCTTCATGAGAGGGGAGCCGGCTAAACT
GCTGCGGGAGCTCGCGCCGATGGAAGATGCCCAAGCCAGCTTCCAGATCT
TGCGGCTATCGGCTGCCGTCCGTACGACCTTCATTCTACGCACTGTTCCC
CCGGACATCACGAAAGCTCCGATGGAAGAGTTCGACCGCATGCTCGAGTG
GAGTTTAGCGACCGTCATTGCTGCCCCCGGAGCGAACGCGGCAGGGCTCG
CATCCCCCGATGAAAGACAAGGACCGAGCACGCCCGAAACCCGCCGGCTG
CGAGCAGCGAAGTTGGTGCACGAGCGGGGAGGGATCACCAAGGCAGCAAG
TGCACTCATATCCCCCGACGCGGCCCCGAGAAACGGAATCACCCTGAGCA
TCCTGCGAGACAAGCCCCCCAGGGAGGACCCCGCCACCATCGCCGAAGCC
AAAGCGAGGGCCGCGAAGTACGCTCACGAGCCGCCCAAGGGGACACCGCC
CCCAATCGCCGAGATCGACCAACCCTTCGAGCCGAGCGCTATCGGCGACG
CCATCAGGAAGGTCAACTCTCAGACTGCGCCCGGTCCATCGGGTCTGCGC
CACTGCTACCTGCAGGATGTACGGGACGACGACTTGGAAGTAGACATCGC
TAGGCTGTCACGCACCATATTCAAGAGCGAAATCTTACCGCCCCTGTTTT
GGGCACTTCACACAGGCTCCAACCTTTCTACGCTGGGAGCAAAAGCAAGG
CCGGTTGCGTGCGGCGACGTCTTTCGCCGGATTATCGGAACAATTTTCAG
CAAGCAGTTGGTCGGACACTTCGAGCCGAAGGAGCAGCACGGCGTCGCCT
GCCCAGGTGGATTCGATCTCATGGCTCGGGCCGTCAGCCTCGGCTTTGCC
GAGGGGTGCACCATTCTGTCATTCGACGGCAAGAATGCTTTCAACTCTAT
CTACCGCCGCGCGTTCTTACCGGCCCTGGCAACGGTGGTCCCGGTGGCAT
CCGGTTACGCTGTGAACCTGTACGCACGAGATCCGCCCAAGCTACTCTTC
GCAATGGACAACGGCACTACGGCGGTCATCGACTCGGCCCGAGGAGTGCA
GCAAGGATGCAACCTAGGTGGATTATGCTTTAGCGCGGGGGGGATCTCTC
TGCTGCAGCGATTCCGAGACAACCCGCCGGTGGAAGGTGCGTCGATATTT
TGCTTCGTTGACGACATCAACATTCTCCTGCCGCCGGCAAAGGCACAAGA
CGCCGAAGCCATCGCGAAAGCCACAACGTGGGTCCAGAAGGAGCGGGAAG
CGATAGGCATCGAGCTCAACCGCGCCAAGTCGCAGGTGCTGCTGGCCAGG
GGCGCCAGCGCCGCAACCTTACCCGCCGGGCAGCGTCGGATTCTGGAGGA
GACCGAGCTGTCCGTAGCGGAAGGCGGCATGAGGGTCCTTGGGGTCGCGG
TCGGCACGGAGGAATACCAGCGGGGGTTTGTGGAGGCCTTCATGAGAGGG
GAGCCGGCTAAACTGCTGCGGGAGCTCGCGCCGATGGAAGATGCCCAAGC
CAGCTTCCAGATCTTGCGGCTATCGGCTGCCGTCCGTACGACCTTCATTC
TACGCACTGTTCCCCCGGACATCACGAAAGCTCCGATGGAAGAGTTCGAC
CGCATGCTCGAGTGGAGTTTAGCGACCGTCATTGCTGCCCCCGGAGCGAA
CGCGGCAGGGCTCGCATCCCCCGATGAAGCACGCCTACCAATCCGGGAGG
GAGGATACGGTCTAACCAGTAGCGCCGACATCCGCGATGCCGCCTTCATC
GGCAGCCAGGCGCTTGTTCTAGCGCGAGCAGTGGCGAAGGTTGCGAGGTC
GGACGTGGCACGCCTACCAATCCGGGAGGGAGGATACGGTCTAACCAGTA
GCGCCGACATCCGCGATGCCGCCTTCATCGGCAGCCAGGCGCTTGTTCTA
GCGCGAGCAGTGGCGAAGGTTGCGAGGTCGGACGTG
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