mRNA_H-elongata_contig103711.310.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 444 bits (1142), Expect = 5.800e-136 Identity = 252/546 (46.15%), Postives = 335/546 (61.36%), Query Frame = 1 Query: 1 RQGPSTPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTPPPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVDIARLSRTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQ----LVGHFEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVI---AAPGANAAGLASPD----------------EARLPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569 RQG ++ RA L H+RGG++KAAS L++P + PRN TL LR K P E IAEA A PP G I +++PF + IR+ N Q +PGPSGLR LQ +L IA+L IF LP FW LHT +NLS +G K RP+A GD+FRRI+G + +Q L HFEP+ Q+GVA PGG +L+A L +G +L++D +NAFNS+ R A LPALA ++P YA N+YAR+PPKLL+ D+G AVI SA GVQQGCNLG LC+SAG + LL+ FR NPPV GA + F+DD+ +LLP A + A TTW+Q + +G+ LNR+KS++L G + P R LE T+L+VAEGGMR++GV VG +Y + RGEP LL+E+A ++DAQAS QILR SAA R F+LR++PPD+TK EFD+ +E +L T++ + PG +A + + +ARLP+REGG G+ S+ DI AFIG QALVLARA+ Sbjct: 1074 RQGEEA--SKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSR-IEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGM-AVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARAL 1615
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 410 bits (1053), Expect = 2.210e-133 Identity = 242/543 (44.57%), Postives = 322/543 (59.30%), Query Frame = 1 Query: 16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVD-IARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR--------------------LPIREGGYGLTSSADIRDAAFIGSQALVLAR 1563 T + R+ RA +L HE GGITKAASALISP +PRN TL LR+ P EDP IA A + K A + K +AE D+PFE I ++K N Q+APGP GLR YLQ D + +A S +F + LP FW LHT +NLS LG K RP+A G V RRII F Q G FE Q G PGG +++A +L +G TILSFDGKNA+NS+ R + LPA+AT P Y N+YAR KLLF M++G+ V+ S RGVQQGCNLGG F G + +++ F + PPV GA + +VDD+ + LPP A++ +AIA T W+Q GIEL+ KS+VL G ++L ++R L +T LSVAEGGM ++GV VGTE +QR FV F RG PA+L+R L+ ++D QAS+Q+LRLS R +LRT+ P IT E D ++ W+++ ++ AN G+ + +E R LPIREGG G+TSS IR++AF+ QALV ++ Sbjct: 37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 579
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 397 bits (1020), Expect = 9.990e-126 Identity = 234/546 (42.86%), Postives = 322/546 (58.97%), Query Frame = 1 Query: 16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVD-IARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR---------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569 T + R+ RA +L HE GGITKAASALISP +PRN TL LR+ P EDP IA A + K A + K +AE D+PFE I ++K N Q+APGP GLR YLQ D + +A S +F + LP FW LHT +NLS LG K RP+A G V RRII F +Q G FE Q G PGG +++A +L +G TILSFDGKNA+NS+ R + LPA+AT P Y N+YAR KLLF M++G+ V+ S RGVQQGCNLGG F G + +++ F + PPV G + +VDD+ LPP A++ +AI+ T W+Q+ GIEL+ KS+VL G ++L +++ L + LSV EGGM V+G+ VGTEE+QR FV RG+PA+L+ LA ++D QAS+Q+LRLS R +LRT+ P IT + + D M+ W+++ ++ A++ + + E R LP+REGG G+TS+ IR++AF+ QALV +++V Sbjct: 37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSV 582
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 400 bits (1027), Expect = 1.850e-124 Identity = 235/546 (43.04%), Postives = 322/546 (58.97%), Query Frame = 1 Query: 16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQ-DVRDDDLEVDIARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR---------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569 T + R+ RA +L HE GGITKAASALISP +PRN TL LR+ P EDP IA A + K A + K +AE D+PFE I ++K N Q+APGP GLR YLQ D +A S +F + LP FW LHT +NLS LG K RP+A G V RRII F +Q G FE Q G PGG +++A +L +G TILSFDGKNA+NS+ R + LPA+AT P Y N+YAR KLLF M++G+ V+ S RGVQQGCNLGG F G + +++ F + PPV G + +VDD+ LPP A++ +AI+ T W+Q+ GIEL+ KS+VL G ++L +++ L + LSVAEGGM V+G+ VGTEE+QR FV RG+PA+L+ LA ++D QAS+Q+LRLS R +LRT+ P IT + + D M+ W+++ ++ A++ + + E R LP+REGG G+TS+ IR++AF+ QALV +++V Sbjct: 37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSV 582
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 324 bits (830), Expect = 1.400e-101 Identity = 182/415 (43.86%), Postives = 251/415 (60.48%), Query Frame = 1 Query: 397 RTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGL-------ASP---------DEAR----LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569 + + + LP FW LHT +NLS LG K RP+A G V RRII F +Q G FE Q G PGG +++A +L +G TILSFDGKNA+NS+ R + LPA+AT P + Y N+YAR KLLF M++G+ V+ S RGVQQGCNLGG F G + +++ F + PPV GA + +VDD+ + LPP A++ +AIA T W+Q GIEL+ KS VL G ++L ++R L +T LSVAEGGM ++GV VGTE +QR FV F RG PA+L+ L+ ++D Q S+Q+LR+S R +LRT+ P IT E D ++ W+++ ++ AN G+ A+P D AR LPIREGG G+TSS IR++AF+ QALV +++V Sbjct: 15 KVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSV 429
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 317 bits (811), Expect = 1.130e-92 Identity = 173/416 (41.59%), Postives = 249/416 (59.86%), Query Frame = 1 Query: 397 RTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR---------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569 + + + LP W LHT +NLS LG K RP+A G V RRII F +Q G FE Q G PGG +++A +L +G TILSFDGKNA+NS+ R + LPA+AT+ P Y N+YAR KLLF M++G+ V+ S RGVQQGCNLGG F G + +++ F + PPV G + +VDD+ LPP A++ +AI+ T W+Q+ GIEL+ KS+VL G ++L +++ L + LSVAEGGM V+G+ VGTEE+QR FV RG+PA+L+ LA ++D QAS+Q+LRLS R +LRT+ P IT + + D M+ W+++ ++ A++ + + E R LP+REGG G+TS+ IR++AF+ QALV +++V Sbjct: 15 KVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSV 430
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 281 bits (719), Expect = 2.290e-86 Identity = 165/361 (45.71%), Postives = 215/361 (59.56%), Query Frame = 1 Query: 16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEAKARAAKYAHEPPKGTP-PPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDVRDDDLEVD-IARLSRTIFK-SEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRIIGTIFSKQLVGH----FEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVL 1077 T + R+ RA +L HE GGITKAASALISP +PRN TL LR+ P EDP IA A + K A + + +AE D+PFE I ++K N Q+APGP GLR YLQ D + +A S +F + LP FW LHT +NLS LG K RP+A G V RRII F +Q G FE Q G PGG +++A +L +G TILSFDGKNA+NS+ R + LPA+AT P Y N+YAR KLLF M++G+ V+ S RGVQQGCNLGG F G + +++ F + PPV G + +VDD+ LPP A++ +AI+ T W+Q+ GIEL+ KS+VL Sbjct: 37 TEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE) HSP 1 Score: 219 bits (557), Expect = 7.570e-64 Identity = 119/278 (42.81%), Postives = 170/278 (61.15%), Query Frame = 1 Query: 790 MDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR--------------------LPIREGGYGLTSSADIRDAAFIGSQALVLAR 1563 M++G+ ++ S RGVQQGCNLGG FS G + ++ F D PPV GA + +VDD+ + LPP A++ +AIA T W+Q GIEL+ KS+VL G ++L ++R L +T LSVAEGGM ++GV VGTE +QR FV F RG PA+L+R L+ ++D QAS+Q+LRLS R +LRT+ P IT E D ++ W+++ ++ AN G+ + +E R LPIREGG G+TSS IR++AF+ QALV ++ Sbjct: 1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 278
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE) HSP 1 Score: 178 bits (451), Expect = 6.290e-48 Identity = 100/247 (40.49%), Postives = 146/247 (59.11%), Query Frame = 1 Query: 889 LQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGFVEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSLATVIAAPGANAAGLASPDEAR--------------------LPIREGGYGLTSSADIRDAAFIGSQALVLARAV 1569 ++ F D PPV GA + +VDD+++ LPP A++ +AIA T W+Q IEL+ KS+VL G ++L ++R L +T LSVAEGGM ++GV VGTE +QR FV F RG PA+L+R L+ ++D QAS+Q+LRLS R +LRT P IT E D ++ W+++ ++ AN G+ + +E R LPIREGG +T S IR++AF+ QALV +++V Sbjct: 1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAFVAGQALVFSKSV 247
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 182 bits (463), Expect = 6.760e-46 Identity = 144/477 (30.19%), Postives = 219/477 (45.91%), Query Frame = 1 Query: 16 TPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKPPREDPATIAEA--KARAAKYAHEPPKGTPPPIAEIDQPFEPSAIGDAIRKVNSQTAPGPSGLRHCYLQDV------RDDDLEVDIARLSRTIFKSEILPPLFWALHTGSNLSTLGAKARPVACGDVFRRII--GTI--FSKQLVGHFEPKEQHGVACPGGFDLMARAVSLGFAEGCTILSFDGKNAFNSIYRRAFLPALATVVPVASGYAVNLYARDPPKLLFAMDNGTTAVIDSARGVQQGCNLGGLCFSAGGISLLQRFRDNPPVEGASIFCFVDDINILLPPAKAQDAEAIAKATTWVQKEREAIGIELNRAKSQVLLARGASAATLPAGQRRILEETELSVAEGGMRVLGVAVGTEEYQRGF-VEAFMRGEPAKLLRELAPMEDAQASFQILRLSAAVRTTFILRTVPPDITKAPMEEFDRMLEWSL 1407 TP+ + RAA+ GG+ AA AL++ +P N T + L+ K P EDP + +A +A+AA E P E + F+P + I +S + G G R +L+ + R++ + R I PP FW L S+L LG K RPV G +RR+I GT+ + +L F +Q GVA GG + +A L G ++ D NAFN+ R A + A VP GY Y P K ++ MD+G I+ GVQQG +G F + ++ + R G + ++DDI++ A++ + I E EA+GI +NR KS L G A PA +RR+L + L +AE G+ V+GV +GT+ Y ++ G KL R L M D Q + + S R+ ++ R + + + E D M+ W L Sbjct: 307 TPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETE--FDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVD----ELEAVGIIVNRGKSSALHPPGRDVA--PA-ERRLLGDAGLPIAEEGITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERGINHKLVRGACERLDNMVMWVL 774 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103711.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103711.310.1 >prot_H-elongata_contig103711.310.1 ID=prot_H-elongata_contig103711.310.1|Name=mRNA_H-elongata_contig103711.310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=531bp RQGPSTPETRRLRAAKLVHERGGITKAASALISPDAAPRNGITLSILRDKback to top mRNA from alignment at H-elongata_contig103711:659..2314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103711.310.1 ID=mRNA_H-elongata_contig103711.310.1|Name=mRNA_H-elongata_contig103711.310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1656bp|location=Sequence derived from alignment at H-elongata_contig103711:659..2314- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103711:659..2314- >mRNA_H-elongata_contig103711.310.1 ID=mRNA_H-elongata_contig103711.310.1|Name=mRNA_H-elongata_contig103711.310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3186bp|location=Sequence derived from alignment at H-elongata_contig103711:659..2314- (Himanthalia elongata Himel1 dioecious)back to top |