mRNA_H-elongata_contig103695.308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig103695.308.1
Unique Name	mRNA_H-elongata_contig103695.308.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Match: A0A6D2HB54_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HB54_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 4.780e-7
Identity = 30/82 (36.59%), Postives = 51/82 (62.20%), Query Frame = 1

Query:   55 IGAKSLSGAWAILNSMVDDEDSEIAKEQAKNKFEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY 300
            + A S   AW +L    +++ S++ +   + +FEELRME G+T  +YI +VK +  Q+R   I KSD+E+++++LN  S  Y
Sbjct:   85 LSASSAKEAWDLLRKG-NEQKSKLGR--LEKRFEELRMEEGETFNDYIDRVKEIVEQLRRLNISKSDYEVTKKVLNSLSAPY 163

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot

BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6D2HB54_9BRAS	4.780e-7	36.59	CCHC-type domain-containing protein n=1 Tax=Microt...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig103695	contig	H-elongata_contig103695:157..684 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	528
Cds size	528
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929571.8622022-CDS-H-elongata_contig103695:156..684	1622929571.8622022-CDS-H-elongata_contig103695:156..684	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103695 157..684 -
1691679075.478395-CDS-H-elongata_contig103695:156..684	1691679075.478395-CDS-H-elongata_contig103695:156..684	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103695 157..684 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig103695.308.1	prot_H-elongata_contig103695.308.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig103695 157..684 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig103695:157..684-
coding sequence from alignment at H-elongata_contig103695:157..684-

protein sequence of mRNA_H-elongata_contig103695.308.1

>prot_H-elongata_contig103695.308.1 ID=prot_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MKCPDESPGKDKTIAEVVIGAKSLSGAWAILNSMVDDEDSEIAKEQAKNK
FEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY
ASEKRNFALRTDFSLSDLEGGLIRVEDPNKSLDGADGSHALAAGFKARGG
DQGERGSGGCEGRSGGRGRGASGRGR

mRNA from alignment at H-elongata_contig103695:157..684-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig103695.308.1 ID=mRNA_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig103695:157..684- (Himanthalia elongata Himel1 dioecious)
ATGAAATGCCCTGATGAAAGCCCTGGAAAGGATAAGACAATAGCTGAAGT
GGTAATAGGGGCGAAATCACTCTCTGGGGCATGGGCGATTCTCAACAGCA
TGGTTGACGATGAAGATAGTGAGATCGCCAAAGAACAAGCGAAAAACAAA
TTCGAAGAGTTAAGAATGGAAAGTGGTCAGACGATCAGGGAATACATTGC
CAAAGTCAAATCCATGGCTAATCAAATCAGATATTACGGCATCGAGAAGT
CTGATCATGAGATAAGCCGTAGGATCCTAAATGGCTTTTCCCCCGCGTAT
GCCTCCGAAAAGCGTAATTTTGCACTTAGAACAGATTTTAGCCTAAGTGA
CCTGGAGGGTGGTCTGATCCGAGTGGAGGATCCAAACAAGAGTCTGGACG
GAGCCGACGGCAGCCATGCCCTGGCCGCTGGTTTCAAAGCCAGAGGTGGC
GACCAGGGCGAGCGAGGATCCGGGGGTTGCGAGGGACGCAGTGGCGGCAG
AGGTCGAGGTGCCAGCGGACGTGGGAGA

Coding sequence (CDS) from alignment at H-elongata_contig103695:157..684-

>mRNA_H-elongata_contig103695.308.1 ID=mRNA_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig103695:157..684- (Himanthalia elongata Himel1 dioecious)
ATGAAATGCCCTGATGAAAGCCCTGGAAAGGATAAGACAATAGCTGAAGT
GGTAATAGGGGCGAAATCACTCTCTGGGGCATGGGCGATTCTCAACAGCA
TGGTTGACGATGAAGATAGTGAGATCGCCAAAGAACAAGCGAAAAACAAA
TTCGAAGAGTTAAGAATGGAAAGTGGTCAGACGATCAGGGAATACATTGC
CAAAGTCAAATCCATGGCTAATCAAATCAGATATTACGGCATCGAGAAGT
CTGATCATGAGATAAGCCGTAGGATCCTAAATGGCTTTTCCCCCGCGTAT
GCCTCCGAAAAGCGTAATTTTGCACTTAGAACAGATTTTAGCCTAAGTGA
CCTGGAGGGTGGTCTGATCCGAGTGGAGGATCCAAACAAGAGTCTGGACG
GAGCCGACGGCAGCCATGCCCTGGCCGCTGGTTTCAAAGCCAGAGGTGGC
GACCAGGGCGAGCGAGGATCCGGGGGTTGCGAGGGACGCAGTGGCGGCAG
AGGTCGAGGTGCCAGCGGACGTGGGAGAATGAAATGCCCTGATGAAAGCC
CTGGAAAGGATAAGACAATAGCTGAAGTGGTAATAGGGGCGAAATCACTC
TCTGGGGCATGGGCGATTCTCAACAGCATGGTTGACGATGAAGATAGTGA
GATCGCCAAAGAACAAGCGAAAAACAAATTCGAAGAGTTAAGAATGGAAA
GTGGTCAGACGATCAGGGAATACATTGCCAAAGTCAAATCCATGGCTAAT
CAAATCAGATATTACGGCATCGAGAAGTCTGATCATGAGATAAGCCGTAG
GATCCTAAATGGCTTTTCCCCCGCGTATGCCTCCGAAAAGCGTAATTTTG
CACTTAGAACAGATTTTAGCCTAAGTGACCTGGAGGGTGGTCTGATCCGA
GTGGAGGATCCAAACAAGAGTCTGGACGGAGCCGACGGCAGCCATGCCCT
GGCCGCTGGTTTCAAAGCCAGAGGTGGCGACCAGGGCGAGCGAGGATCCG
GGGGTTGCGAGGGACGCAGTGGCGGCAGAGGTCGAGGTGCCAGCGGACGT
GGGAGA