mRNA_H-elongata_contig103695.308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103695.308.1
Unique NamemRNA_H-elongata_contig103695.308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Match: A0A6D2HB54_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HB54_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 4.780e-7
Identity = 30/82 (36.59%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   55 IGAKSLSGAWAILNSMVDDEDSEIAKEQAKNKFEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY 300
            + A S   AW +L    +++ S++ +   + +FEELRME G+T  +YI +VK +  Q+R   I KSD+E+++++LN  S  Y
Sbjct:   85 LSASSAKEAWDLLRKG-NEQKSKLGR--LEKRFEELRMEEGETFNDYIDRVKEIVEQLRRLNISKSDYEVTKKVLNSLSAPY 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6D2HB54_9BRAS4.780e-736.59CCHC-type domain-containing protein n=1 Tax=Microt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103695contigH-elongata_contig103695:157..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size528
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.8622022-CDS-H-elongata_contig103695:156..6841622929571.8622022-CDS-H-elongata_contig103695:156..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103695 157..684 -
1691679075.478395-CDS-H-elongata_contig103695:156..6841691679075.478395-CDS-H-elongata_contig103695:156..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103695 157..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103695.308.1prot_H-elongata_contig103695.308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103695 157..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103695.308.1

>prot_H-elongata_contig103695.308.1 ID=prot_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MKCPDESPGKDKTIAEVVIGAKSLSGAWAILNSMVDDEDSEIAKEQAKNK
FEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY
ASEKRNFALRTDFSLSDLEGGLIRVEDPNKSLDGADGSHALAAGFKARGG
DQGERGSGGCEGRSGGRGRGASGRGR
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mRNA from alignment at H-elongata_contig103695:157..684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103695.308.1 ID=mRNA_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig103695:157..684- (Himanthalia elongata Himel1 dioecious)
ATGAAATGCCCTGATGAAAGCCCTGGAAAGGATAAGACAATAGCTGAAGT
GGTAATAGGGGCGAAATCACTCTCTGGGGCATGGGCGATTCTCAACAGCA
TGGTTGACGATGAAGATAGTGAGATCGCCAAAGAACAAGCGAAAAACAAA
TTCGAAGAGTTAAGAATGGAAAGTGGTCAGACGATCAGGGAATACATTGC
CAAAGTCAAATCCATGGCTAATCAAATCAGATATTACGGCATCGAGAAGT
CTGATCATGAGATAAGCCGTAGGATCCTAAATGGCTTTTCCCCCGCGTAT
GCCTCCGAAAAGCGTAATTTTGCACTTAGAACAGATTTTAGCCTAAGTGA
CCTGGAGGGTGGTCTGATCCGAGTGGAGGATCCAAACAAGAGTCTGGACG
GAGCCGACGGCAGCCATGCCCTGGCCGCTGGTTTCAAAGCCAGAGGTGGC
GACCAGGGCGAGCGAGGATCCGGGGGTTGCGAGGGACGCAGTGGCGGCAG
AGGTCGAGGTGCCAGCGGACGTGGGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig103695:157..684-

>mRNA_H-elongata_contig103695.308.1 ID=mRNA_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig103695:157..684- (Himanthalia elongata Himel1 dioecious)
ATGAAATGCCCTGATGAAAGCCCTGGAAAGGATAAGACAATAGCTGAAGT
GGTAATAGGGGCGAAATCACTCTCTGGGGCATGGGCGATTCTCAACAGCA
TGGTTGACGATGAAGATAGTGAGATCGCCAAAGAACAAGCGAAAAACAAA
TTCGAAGAGTTAAGAATGGAAAGTGGTCAGACGATCAGGGAATACATTGC
CAAAGTCAAATCCATGGCTAATCAAATCAGATATTACGGCATCGAGAAGT
CTGATCATGAGATAAGCCGTAGGATCCTAAATGGCTTTTCCCCCGCGTAT
GCCTCCGAAAAGCGTAATTTTGCACTTAGAACAGATTTTAGCCTAAGTGA
CCTGGAGGGTGGTCTGATCCGAGTGGAGGATCCAAACAAGAGTCTGGACG
GAGCCGACGGCAGCCATGCCCTGGCCGCTGGTTTCAAAGCCAGAGGTGGC
GACCAGGGCGAGCGAGGATCCGGGGGTTGCGAGGGACGCAGTGGCGGCAG
AGGTCGAGGTGCCAGCGGACGTGGGAGAATGAAATGCCCTGATGAAAGCC
CTGGAAAGGATAAGACAATAGCTGAAGTGGTAATAGGGGCGAAATCACTC
TCTGGGGCATGGGCGATTCTCAACAGCATGGTTGACGATGAAGATAGTGA
GATCGCCAAAGAACAAGCGAAAAACAAATTCGAAGAGTTAAGAATGGAAA
GTGGTCAGACGATCAGGGAATACATTGCCAAAGTCAAATCCATGGCTAAT
CAAATCAGATATTACGGCATCGAGAAGTCTGATCATGAGATAAGCCGTAG
GATCCTAAATGGCTTTTCCCCCGCGTATGCCTCCGAAAAGCGTAATTTTG
CACTTAGAACAGATTTTAGCCTAAGTGACCTGGAGGGTGGTCTGATCCGA
GTGGAGGATCCAAACAAGAGTCTGGACGGAGCCGACGGCAGCCATGCCCT
GGCCGCTGGTTTCAAAGCCAGAGGTGGCGACCAGGGCGAGCGAGGATCCG
GGGGTTGCGAGGGACGCAGTGGCGGCAGAGGTCGAGGTGCCAGCGGACGT
GGGAGA
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