Homology
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
D7FSQ4_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ4_ECTSI)
HSP 1 Score: 167 bits (422), Expect = 6.520e-49
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
MD+S + FDE +A+NTRAPLLVSQVCL+GMIK K KIVNITSQSAVIA K H+ YCASKAAMDGL++GLVCDL+QHNIQVNNIAPTVAWSDMG+K WG
Sbjct: 190 MDISSDTFDEVIAINTRAPLLVSQVCLQGMIKNKSGKIVNITSQSAVIATKAHASYCASKAAMDGLLHGLVCDLAQHNIQVNNIAPTVAWSDMGIKTWG 288
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
A0A832EU15_9RHOB (Glucose 1-dehydrogenase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832EU15_9RHOB)
HSP 1 Score: 106 bits (265), Expect = 2.790e-26
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
+D+SV+D+DET+AVN RAP ++SQV GMI+++ KI+NI+SQ+ VIA+ DH+ Y SK A++ L L+ + + HNIQVN I PTV + MG +VW
Sbjct: 106 VDLSVDDWDETMAVNVRAPFVLSQVLAPGMIERRQGKIINISSQTGVIALADHAAYATSKGALNALTKSLMAEWAPHNIQVNAICPTVVLTPMGREVW 203
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
UPI000D3E5D78 (glucose 1-dehydrogenase n=1 Tax=Acuticoccus kandeliae TaxID=2073160 RepID=UPI000D3E5D78)
HSP 1 Score: 106 bits (264), Expect = 3.930e-26
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
MD++VED+D T+AVN RAP L+++ GMI Q++ KIVNI+SQ+ VIA+ +H+ Y ASK A++ L L + +QHN+QVN I PTV + MG +VW
Sbjct: 106 MDLTVEDWDLTMAVNVRAPFLLARALAPGMIAQRWGKIVNISSQTGVIALPEHAAYAASKGALNALTKSLTAEWAQHNVQVNAICPTVVMTPMGKQVW 203
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
A0A8I1LNS6_9RHOB (SDR family oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A8I1LNS6_9RHOB)
HSP 1 Score: 105 bits (261), Expect = 9.690e-26
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
+++SV D+D T+A+N RAP L+S+ GMI +K KIVNI+SQ+ VIA+ DH+ Y ASK ++ L L+ +L+ HN+QVN I PTV ++MG K+W
Sbjct: 100 IELSVADWDRTMAINLRAPFLLSRALAPGMIARKQGKIVNISSQTGVIAIPDHAAYAASKGGLNALTKSLMTELAPHNVQVNAICPTVVMTEMGQKIW 197
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
A0A1G6A723_9HYPH (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6A723_9HYPH)
HSP 1 Score: 105 bits (261), Expect = 1.100e-25
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
++ +VE +D T AVNTRAP L++Q MI QK+ KI+N++SQ+ +A+ DH+ Y ASK A++ L L C+ ++HNIQVN I PTV + MG++VW
Sbjct: 106 LETTVEHWDHTFAVNTRAPFLLAQALAPQMIAQKWGKIINVSSQTGPLAIDDHAAYAASKGALNALTKSLTCEWAKHNIQVNAICPTVVMTPMGIRVW 203
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
A0A7W0MMG9_9RHOB (SDR family oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7W0MMG9_9RHOB)
HSP 1 Score: 102 bits (254), Expect = 1.210e-24
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
++++VED+D +AVN RAP L++Q GMI Q++ KIVNI+SQ+ VIA+ DH+ Y +SK ++ L L+ + ++HN+QVN I PTV + MG VWG
Sbjct: 106 LEMAVEDWDAIMAVNLRAPFLLAQALAPGMIAQRWGKIVNISSQTGVIALDDHAAYASSKGGLNALTKSLMAEWARHNVQVNAICPTVVMTPMGRAVWG 204
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
A0A7C5IVK0_9HYPH (Glucose 1-dehydrogenase n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5IVK0_9HYPH)
HSP 1 Score: 102 bits (253), Expect = 1.700e-24
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
+D+++E +D T+AVN RAP L+SQ MI Q++ KI+NI+SQ+ VIA+KDH+ Y SK A++ L L+ + ++HNIQVN I PTV + MG ++W
Sbjct: 106 LDLTLEQWDRTMAVNLRAPFLLSQALAPKMIAQRWGKIINISSQTGVIALKDHAAYATSKGALNALTKSLMAEWAEHNIQVNAICPTVVLTPMGKELW 203
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
V7ENK8_9RHOB (Short-chain dehydrogenase n=5 Tax=Rhodobacteraceae TaxID=31989 RepID=V7ENK8_9RHOB)
HSP 1 Score: 100 bits (248), Expect = 9.380e-24
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 4 DVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
D+++ D+DET+AVN RAP L++Q MI Q++ K++NI+SQ+ VIA+ DH+ Y SK A++ L L + ++HN+QVN I PTV + MG VWG
Sbjct: 107 DLTLADWDETMAVNVRAPFLLAQALGPAMIAQRWGKVINISSQTGVIALDDHAAYATSKGALNALTKSLCAEWARHNVQVNAICPTVILTPMGKAVWG 204
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
UPI001F1AC034 (glucose 1-dehydrogenase n=1 Tax=Acuticoccus sp. M5D2P5 TaxID=2910977 RepID=UPI001F1AC034)
HSP 1 Score: 99.4 bits (246), Expect = 1.860e-23
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
++++ ED+D ++AVN RAP L+S+ MI Q+ KIVNI+SQ+ VIA+ DH+ Y +SK A++ L L+ + ++HNIQVN I PTV + MG +VWG
Sbjct: 106 LELTAEDWDLSMAVNVRAPFLLSRALAPAMIAQRSGKIVNISSQTGVIALDDHAAYASSKGALNALTKSLMAEWARHNIQVNAICPTVVLTPMGKEVWG 204
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match:
A0A7X3YXG8_9RHOB (SDR family oxidoreductase n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7X3YXG8_9RHOB)
HSP 1 Score: 99.0 bits (245), Expect = 2.320e-23
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query: 1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
+D S ED+D T+A+N RAP L+++ GMI K KI+NI+SQ+ VIA+ +H Y SK ++ L L+ +L+ HNIQVN I PTV ++MG KVW
Sbjct: 100 LDYSAEDWDRTMAINLRAPFLLAKGLAPGMIAAKAGKIINISSQTGVIALAEHVAYATSKGGLNALTKSLMVELAPHNIQVNAICPTVVMTEMGKKVW 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 6.52e-49 / Id = 79.80 Expect = 2.79e-26 / Id = 51.02 Expect = 3.93e-26 / Id = 51.02 Expect = 9.69e-26 / Id = 48.98 Expect = 1.10e-25 / Id = 47.96 Expect = 1.21e-24 / Id = 47.47 Expect = 1.70e-24 / Id = 47.96 Expect = 9.38e-24 / Id = 46.94 Expect = 1.86e-23 / Id = 47.47 Expect = 2.32e-23 / Id = 47.96 Sequence D7FSQ4_ECTSI A0A832EU15_9RHOB UPI000D3E5D78 A0A8I1LNS6_9RHOB A0A1G6A723_9HYPH A0A7W0MMG9_9RHOB A0A7C5IVK0_9HYPH V7ENK8_9RHOB UPI001F1AC034 A0A7X3YXG8_9RHOB Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 165.6 Seed ortholog evalue 1.2e-38 Seed eggNOG ortholog 2880.D7FSQ4 Preferred name DCXR KEGG rclass RC00102,RC00154,RC01491 KEGG ko ko:K00081,ko:K03331 KEGG Reaction R01904,R02581,R09420 KEGG Pathway ko00040,ko00590,ko00980,ko01100,map00040,map00590,map00980,map01100 KEGG Module M00014 GOs GO:0003674,GO:0003824,GO:0004090,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005902,GO:0005903,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006006,GO:0006063,GO:0006064,GO:0006082,GO:0006116,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016651,GO:0016655,GO:0019318,GO:0019321,GO:0019323,GO:0019362,GO:0019585,GO:0019637,GO:0019640,GO:0019674,GO:0019752,GO:0022607,GO:0032787,GO:0034641,GO:0042802,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0043621,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046395,GO:0046483,GO:0046496,GO:0050038,GO:0051167,GO:0051186,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072524,GO:0090407,GO:0098858,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901135,GO:1901137,GO:1901159,GO:1901360,GO:1901564,GO:1901575,GO:1901576 EggNOG free text desc. L-xylulose reductase (NAD ) activity EggNOG OGs KOG1207@1,KOG1207@2759 EC 1.1.1.10,1.1.1.184 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000 Hectar predicted targeting category other localisation Exons 4 Model size 299 Cds size 297 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929571.1381507-CDS-H-elongata_contig103611:63..135 1622929571.1381507-CDS-H-elongata_contig103611:63..135 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 64..135 + 1691679075.212302-CDS-H-elongata_contig103611:63..135 1691679075.212302-CDS-H-elongata_contig103611:63..135 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 64..135 + 1622929571.155069-CDS-H-elongata_contig103611:740..834 1622929571.155069-CDS-H-elongata_contig103611:740..834 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 741..834 + 1691679075.222795-CDS-H-elongata_contig103611:740..834 1691679075.222795-CDS-H-elongata_contig103611:740..834 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 741..834 + 1622929571.173909-CDS-H-elongata_contig103611:1544..1618 1622929571.173909-CDS-H-elongata_contig103611:1544..1618 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 1545..1618 + 1691679075.229699-CDS-H-elongata_contig103611:1544..1618 1691679075.229699-CDS-H-elongata_contig103611:1544..1618 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 1545..1618 + 1622929571.1941857-CDS-H-elongata_contig103611:2054..2111 1622929571.1941857-CDS-H-elongata_contig103611:2054..2111 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 2055..2111 + 1691679075.2390308-CDS-H-elongata_contig103611:2054..2111 1691679075.2390308-CDS-H-elongata_contig103611:2054..2111 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig103611 2055..2111 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103611.301.1
>prot_H-elongata_contig103611.301.1 ID=prot_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAV back to top mRNA from alignment at H-elongata_contig103611:64..2111+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103611.301.1 ID=mRNA_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-elongata_contig103611:64..2111+ (Himanthalia elongata Himel1 dioecious)ATGGATGTGTCGGTAGAGGACTTCGACGAGACCGTCGCGGTAAACACTCG
CGCCCCACTCCTCGTCTCCCAG GTGTGTAGAGAAGTACACTTCGATAGAT
ACCCTTCGTGCCCACCCGGGTTGGCGCTGTTGGCAAAGCCCAGTAAAACA
TTCAACCCCAAACCTAGTCCCCTATAGATAATTTATACATCGATGAAAGT
GAAGCAACTCAGACAGATTAAGTGAAAATTGAATGACACTGAGGAATACC
TAGATCTGTGTAAAGTTTGATGAAGGTAAATAAATCAAGAATCCAGCCGC
GACAATCCCAACAGCATTCTTCGTTATTCAAGTAGATCGTTTTTTAAAGT
ATGAGAATTGAAGCCCTTAGGTCTTTTTGGTTTGTCTTGTAATATAGGAA
TGTGTGATCCGCGTGAGGGAAGCCATCCAACTTATTCTTCACTTTTCCGT
AATATTCGGAGCTGGAAGCCCCCCGGGTACTTACTTCATCTCCCTATTTT
TCCCCACAGCGACAAGGCTCACAATATGAAATAGCGCCTTTTTAAGGAGA
TCCCGCCACCATTTCGTTGAAGACGTTGGTATCCGCCGTATTTGTAGGGG
GAAATGAGGTCGTAAAGCCATGTCTCCAACAGAGTCTACCTCAAGTTACT
GGGGCGGGTGCCTTGTGTCTCACTCAGGTTTGTTTGGAGGGCATGATCAA
GCAAAAGTATAGCAAGATTGTGAATATCACCTCGCAAAGCGCCGTCATCG
CCGTCAAGGACCACAGTGTCT GTGAGAAGGGAGTCTGTTTTTTCTTGTGA
CACTAGTATATTTGAAACGGGAATGTCATTTTGAGGCCCTCGTAACGATA
TAGCTCTCTGTCTGACGTCGTCAAAATCCATATGCTGTGAGAGGCAGTGA
GAGCCTTCTAGCTCTCGATAAAATTATAACATGCGATGCATCTTCATCAT
GTACTGTATCTAACAATTGATGATGTAGCACGGTGTTACCCTTGTGGGTA
TAGATTGCTCTCGACGGCCGTTGTTCTATCCTGGTGGTCGATTTCTGAAC
ATACGGACGTACGCTGTTTTTCAAGCCGTGCTAAGGTGGTAGCATTCGTT
TTGTATTTCAAACGGTGCATTGCTGTCCACTCATAGCTCATTGCTACTGT
GTTTATGCGTGTCTCAGCTGGTGGTTAGGCTGCGGATCTGTGGGGTAGCT
ATAAGACGTATGCGCATATAATAGTAGGTAGGCATATCGCAATGAGTTGT
GAGATCCCCAAGCGCAGTGAATGTCGGAGATTACACTTACCCGACTTCGT
CGGTCCCACGTGTTTGTATTTATGGTGAGCGTAAATAAAGTGGTTCCGCT
GTTGTAGTAGACGCTGAAATCTAGATGCCCCTCATAATGACGCATGGGAT
CAGGGAACGCGTTCATTTGTCTCACGAACTCACAAATACTACCCTCTACT
GTGTTGCTCGTTATGTCTTACACCACGCCAGACTGTGCTTCGAAAGCCGC
CATGGATGGGCTTATGAACGGACTTGTCTGCGACCTTTCCCAGCACAACA
TACAG GTAAAACGCGAAACGACCCGTGGACTATTATTGGGGTCTAGAAGA
AGGGGAAGGGAGTGCTCAGTTTCCGCACGCGAGAAATCGTTTAGAGGAAG
ATAAATTGTAGACGAATAGCGCAAAAAAAGAATGCCTACAGTTGAAATGT
GGCAATCCTTATTGACTGATTATAGTGTTACCCATGGTTTGGAAGATAGA
TATGCGCGGGGTGTTTCCGTCTCGTACACTAACTTACCTTGGTCACGGCA
GCCAATAAGCTTTGCCCTGGAGGTCTTATATGTACGATACTCGGGTGCGA
GTCAAGTAATTGTTGCCGAAAGAGGTTGTTTATCCCTACAATAGGACAGC
GTCGTTGAGCATAATTGATAGTATGCTCAATAACATAACGCAACGTTGCA
TTAAAACCCTTTAATTACAACACACCTCATGTTTGCTCAAGGTGAACAAC
ATCGCTCCAACGGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGA back to top Coding sequence (CDS) from alignment at H-elongata_contig103611:64..2111+
>mRNA_H-elongata_contig103611.301.1 ID=mRNA_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig103611:64..2111+ (Himanthalia elongata Himel1 dioecious) back to top