mRNA_H-elongata_contig103611.301.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103611.301.1
Unique NamemRNA_H-elongata_contig103611.301.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: D7FSQ4_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ4_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.520e-49
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            MD+S + FDE +A+NTRAPLLVSQVCL+GMIK K  KIVNITSQSAVIA K H+ YCASKAAMDGL++GLVCDL+QHNIQVNNIAPTVAWSDMG+K WG
Sbjct:  190 MDISSDTFDEVIAINTRAPLLVSQVCLQGMIKNKSGKIVNITSQSAVIATKAHASYCASKAAMDGLLHGLVCDLAQHNIQVNNIAPTVAWSDMGIKTWG 288
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A832EU15_9RHOB (Glucose 1-dehydrogenase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832EU15_9RHOB)

HSP 1 Score: 106 bits (265), Expect = 2.790e-26
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +D+SV+D+DET+AVN RAP ++SQV   GMI+++  KI+NI+SQ+ VIA+ DH+ Y  SK A++ L   L+ + + HNIQVN I PTV  + MG +VW
Sbjct:  106 VDLSVDDWDETMAVNVRAPFVLSQVLAPGMIERRQGKIINISSQTGVIALADHAAYATSKGALNALTKSLMAEWAPHNIQVNAICPTVVLTPMGREVW 203
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: UPI000D3E5D78 (glucose 1-dehydrogenase n=1 Tax=Acuticoccus kandeliae TaxID=2073160 RepID=UPI000D3E5D78)

HSP 1 Score: 106 bits (264), Expect = 3.930e-26
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            MD++VED+D T+AVN RAP L+++    GMI Q++ KIVNI+SQ+ VIA+ +H+ Y ASK A++ L   L  + +QHN+QVN I PTV  + MG +VW
Sbjct:  106 MDLTVEDWDLTMAVNVRAPFLLARALAPGMIAQRWGKIVNISSQTGVIALPEHAAYAASKGALNALTKSLTAEWAQHNVQVNAICPTVVMTPMGKQVW 203
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A8I1LNS6_9RHOB (SDR family oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A8I1LNS6_9RHOB)

HSP 1 Score: 105 bits (261), Expect = 9.690e-26
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +++SV D+D T+A+N RAP L+S+    GMI +K  KIVNI+SQ+ VIA+ DH+ Y ASK  ++ L   L+ +L+ HN+QVN I PTV  ++MG K+W
Sbjct:  100 IELSVADWDRTMAINLRAPFLLSRALAPGMIARKQGKIVNISSQTGVIAIPDHAAYAASKGGLNALTKSLMTELAPHNVQVNAICPTVVMTEMGQKIW 197
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A1G6A723_9HYPH (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6A723_9HYPH)

HSP 1 Score: 105 bits (261), Expect = 1.100e-25
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            ++ +VE +D T AVNTRAP L++Q     MI QK+ KI+N++SQ+  +A+ DH+ Y ASK A++ L   L C+ ++HNIQVN I PTV  + MG++VW
Sbjct:  106 LETTVEHWDHTFAVNTRAPFLLAQALAPQMIAQKWGKIINVSSQTGPLAIDDHAAYAASKGALNALTKSLTCEWAKHNIQVNAICPTVVMTPMGIRVW 203
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A7W0MMG9_9RHOB (SDR family oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7W0MMG9_9RHOB)

HSP 1 Score: 102 bits (254), Expect = 1.210e-24
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            ++++VED+D  +AVN RAP L++Q    GMI Q++ KIVNI+SQ+ VIA+ DH+ Y +SK  ++ L   L+ + ++HN+QVN I PTV  + MG  VWG
Sbjct:  106 LEMAVEDWDAIMAVNLRAPFLLAQALAPGMIAQRWGKIVNISSQTGVIALDDHAAYASSKGGLNALTKSLMAEWARHNVQVNAICPTVVMTPMGRAVWG 204
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A7C5IVK0_9HYPH (Glucose 1-dehydrogenase n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5IVK0_9HYPH)

HSP 1 Score: 102 bits (253), Expect = 1.700e-24
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +D+++E +D T+AVN RAP L+SQ     MI Q++ KI+NI+SQ+ VIA+KDH+ Y  SK A++ L   L+ + ++HNIQVN I PTV  + MG ++W
Sbjct:  106 LDLTLEQWDRTMAVNLRAPFLLSQALAPKMIAQRWGKIINISSQTGVIALKDHAAYATSKGALNALTKSLMAEWAEHNIQVNAICPTVVLTPMGKELW 203
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: V7ENK8_9RHOB (Short-chain dehydrogenase n=5 Tax=Rhodobacteraceae TaxID=31989 RepID=V7ENK8_9RHOB)

HSP 1 Score: 100 bits (248), Expect = 9.380e-24
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    4 DVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            D+++ D+DET+AVN RAP L++Q     MI Q++ K++NI+SQ+ VIA+ DH+ Y  SK A++ L   L  + ++HN+QVN I PTV  + MG  VWG
Sbjct:  107 DLTLADWDETMAVNVRAPFLLAQALGPAMIAQRWGKVINISSQTGVIALDDHAAYATSKGALNALTKSLCAEWARHNVQVNAICPTVILTPMGKAVWG 204
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: UPI001F1AC034 (glucose 1-dehydrogenase n=1 Tax=Acuticoccus sp. M5D2P5 TaxID=2910977 RepID=UPI001F1AC034)

HSP 1 Score: 99.4 bits (246), Expect = 1.860e-23
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            ++++ ED+D ++AVN RAP L+S+     MI Q+  KIVNI+SQ+ VIA+ DH+ Y +SK A++ L   L+ + ++HNIQVN I PTV  + MG +VWG
Sbjct:  106 LELTAEDWDLSMAVNVRAPFLLSRALAPAMIAQRSGKIVNISSQTGVIALDDHAAYASSKGALNALTKSLMAEWARHNIQVNAICPTVVLTPMGKEVWG 204
[Close]
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A7X3YXG8_9RHOB (SDR family oxidoreductase n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7X3YXG8_9RHOB)

HSP 1 Score: 99.0 bits (245), Expect = 2.320e-23
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +D S ED+D T+A+N RAP L+++    GMI  K  KI+NI+SQ+ VIA+ +H  Y  SK  ++ L   L+ +L+ HNIQVN I PTV  ++MG KVW
Sbjct:  100 LDYSAEDWDRTMAINLRAPFLLAKGLAPGMIAAKAGKIINISSQTGVIALAEHVAYATSKGGLNALTKSLMVELAPHNIQVNAICPTVVMTEMGKKVW 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ4_ECTSI6.520e-4979.80Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
A0A832EU15_9RHOB2.790e-2651.02Glucose 1-dehydrogenase n=1 Tax=Rhodobacteraceae b... [more]
UPI000D3E5D783.930e-2651.02glucose 1-dehydrogenase n=1 Tax=Acuticoccus kandel... [more]
A0A8I1LNS6_9RHOB9.690e-2648.98SDR family oxidoreductase n=1 Tax=Rhodobacteraceae... [more]
A0A1G6A723_9HYPH1.100e-2547.96NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]
A0A7W0MMG9_9RHOB1.210e-2447.47SDR family oxidoreductase n=1 Tax=Rhodobacteraceae... [more]
A0A7C5IVK0_9HYPH1.700e-2447.96Glucose 1-dehydrogenase n=1 Tax=Devosia sp. TaxID=... [more]
V7ENK8_9RHOB9.380e-2446.94Short-chain dehydrogenase n=5 Tax=Rhodobacteraceae... [more]
UPI001F1AC0341.860e-2347.47glucose 1-dehydrogenase n=1 Tax=Acuticoccus sp. M5... [more]
A0A7X3YXG8_9RHOB2.320e-2347.96SDR family oxidoreductase n=2 Tax=Rhodobacteraceae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103611contigH-elongata_contig103611:64..2111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog2880.D7FSQ4
Preferred nameDCXR
KEGG rclassRC00102,RC00154,RC01491
KEGG koko:K00081,ko:K03331
KEGG ReactionR01904,R02581,R09420
KEGG Pathwayko00040,ko00590,ko00980,ko01100,map00040,map00590,map00980,map01100
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0004090,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005902,GO:0005903,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006006,GO:0006063,GO:0006064,GO:0006082,GO:0006116,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016651,GO:0016655,GO:0019318,GO:0019321,GO:0019323,GO:0019362,GO:0019585,GO:0019637,GO:0019640,GO:0019674,GO:0019752,GO:0022607,GO:0032787,GO:0034641,GO:0042802,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0043621,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046395,GO:0046483,GO:0046496,GO:0050038,GO:0051167,GO:0051186,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072524,GO:0090407,GO:0098858,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901135,GO:1901137,GO:1901159,GO:1901360,GO:1901564,GO:1901575,GO:1901576
EggNOG free text desc.L-xylulose reductase (NAD ) activity
EggNOG OGsKOG1207@1,KOG1207@2759
EC1.1.1.10,1.1.1.184
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size299
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103611.301.1prot_H-elongata_contig103611.301.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103611 64..2111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.1381507-CDS-H-elongata_contig103611:63..1351622929571.1381507-CDS-H-elongata_contig103611:63..135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 64..135 +
1691679075.212302-CDS-H-elongata_contig103611:63..1351691679075.212302-CDS-H-elongata_contig103611:63..135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 64..135 +
1622929571.155069-CDS-H-elongata_contig103611:740..8341622929571.155069-CDS-H-elongata_contig103611:740..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 741..834 +
1691679075.222795-CDS-H-elongata_contig103611:740..8341691679075.222795-CDS-H-elongata_contig103611:740..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 741..834 +
1622929571.173909-CDS-H-elongata_contig103611:1544..16181622929571.173909-CDS-H-elongata_contig103611:1544..1618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 1545..1618 +
1691679075.229699-CDS-H-elongata_contig103611:1544..16181691679075.229699-CDS-H-elongata_contig103611:1544..1618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 1545..1618 +
1622929571.1941857-CDS-H-elongata_contig103611:2054..21111622929571.1941857-CDS-H-elongata_contig103611:2054..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 2055..2111 +
1691679075.2390308-CDS-H-elongata_contig103611:2054..21111691679075.2390308-CDS-H-elongata_contig103611:2054..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103611 2055..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103611.301.1

>prot_H-elongata_contig103611.301.1 ID=prot_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAV
KDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG
back to top

mRNA from alignment at H-elongata_contig103611:64..2111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103611.301.1 ID=mRNA_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-elongata_contig103611:64..2111+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGTCGGTAGAGGACTTCGACGAGACCGTCGCGGTAAACACTCG
CGCCCCACTCCTCGTCTCCCAGGTGTGTAGAGAAGTACACTTCGATAGAT
ACCCTTCGTGCCCACCCGGGTTGGCGCTGTTGGCAAAGCCCAGTAAAACA
TTCAACCCCAAACCTAGTCCCCTATAGATAATTTATACATCGATGAAAGT
GAAGCAACTCAGACAGATTAAGTGAAAATTGAATGACACTGAGGAATACC
TAGATCTGTGTAAAGTTTGATGAAGGTAAATAAATCAAGAATCCAGCCGC
GACAATCCCAACAGCATTCTTCGTTATTCAAGTAGATCGTTTTTTAAAGT
ATGAGAATTGAAGCCCTTAGGTCTTTTTGGTTTGTCTTGTAATATAGGAA
TGTGTGATCCGCGTGAGGGAAGCCATCCAACTTATTCTTCACTTTTCCGT
AATATTCGGAGCTGGAAGCCCCCCGGGTACTTACTTCATCTCCCTATTTT
TCCCCACAGCGACAAGGCTCACAATATGAAATAGCGCCTTTTTAAGGAGA
TCCCGCCACCATTTCGTTGAAGACGTTGGTATCCGCCGTATTTGTAGGGG
GAAATGAGGTCGTAAAGCCATGTCTCCAACAGAGTCTACCTCAAGTTACT
GGGGCGGGTGCCTTGTGTCTCACTCAGGTTTGTTTGGAGGGCATGATCAA
GCAAAAGTATAGCAAGATTGTGAATATCACCTCGCAAAGCGCCGTCATCG
CCGTCAAGGACCACAGTGTCTGTGAGAAGGGAGTCTGTTTTTTCTTGTGA
CACTAGTATATTTGAAACGGGAATGTCATTTTGAGGCCCTCGTAACGATA
TAGCTCTCTGTCTGACGTCGTCAAAATCCATATGCTGTGAGAGGCAGTGA
GAGCCTTCTAGCTCTCGATAAAATTATAACATGCGATGCATCTTCATCAT
GTACTGTATCTAACAATTGATGATGTAGCACGGTGTTACCCTTGTGGGTA
TAGATTGCTCTCGACGGCCGTTGTTCTATCCTGGTGGTCGATTTCTGAAC
ATACGGACGTACGCTGTTTTTCAAGCCGTGCTAAGGTGGTAGCATTCGTT
TTGTATTTCAAACGGTGCATTGCTGTCCACTCATAGCTCATTGCTACTGT
GTTTATGCGTGTCTCAGCTGGTGGTTAGGCTGCGGATCTGTGGGGTAGCT
ATAAGACGTATGCGCATATAATAGTAGGTAGGCATATCGCAATGAGTTGT
GAGATCCCCAAGCGCAGTGAATGTCGGAGATTACACTTACCCGACTTCGT
CGGTCCCACGTGTTTGTATTTATGGTGAGCGTAAATAAAGTGGTTCCGCT
GTTGTAGTAGACGCTGAAATCTAGATGCCCCTCATAATGACGCATGGGAT
CAGGGAACGCGTTCATTTGTCTCACGAACTCACAAATACTACCCTCTACT
GTGTTGCTCGTTATGTCTTACACCACGCCAGACTGTGCTTCGAAAGCCGC
CATGGATGGGCTTATGAACGGACTTGTCTGCGACCTTTCCCAGCACAACA
TACAGGTAAAACGCGAAACGACCCGTGGACTATTATTGGGGTCTAGAAGA
AGGGGAAGGGAGTGCTCAGTTTCCGCACGCGAGAAATCGTTTAGAGGAAG
ATAAATTGTAGACGAATAGCGCAAAAAAAGAATGCCTACAGTTGAAATGT
GGCAATCCTTATTGACTGATTATAGTGTTACCCATGGTTTGGAAGATAGA
TATGCGCGGGGTGTTTCCGTCTCGTACACTAACTTACCTTGGTCACGGCA
GCCAATAAGCTTTGCCCTGGAGGTCTTATATGTACGATACTCGGGTGCGA
GTCAAGTAATTGTTGCCGAAAGAGGTTGTTTATCCCTACAATAGGACAGC
GTCGTTGAGCATAATTGATAGTATGCTCAATAACATAACGCAACGTTGCA
TTAAAACCCTTTAATTACAACACACCTCATGTTTGCTCAAGGTGAACAAC
ATCGCTCCAACGGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig103611:64..2111+

>mRNA_H-elongata_contig103611.301.1 ID=mRNA_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig103611:64..2111+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGTCGGTAGAGGACTTCGACGAGACCGTCGCGGTAAACACTCG
CGCCCCACTCCTCGTCTCCCAGATGGATGTGTCGGTAGAGGACTTCGACG
AGACCGTCGCGGTAAACACTCGCGCCCCACTCCTCGTCTCCCAGGTTTGT
TTGGAGGGCATGATCAAGCAAAAGTATAGCAAGATTGTGAATATCACCTC
GCAAAGCGCCGTCATCGCCGTCAAGGACCACAGTGTCTGTTTGTTTGGAG
GGCATGATCAAGCAAAAGTATAGCAAGATTGTGAATATCACCTCGCAAAG
CGCCGTCATCGCCGTCAAGGACCACAGTGTCTACTGTGCTTCGAAAGCCG
CCATGGATGGGCTTATGAACGGACTTGTCTGCGACCTTTCCCAGCACAAC
ATACAGACTGTGCTTCGAAAGCCGCCATGGATGGGCTTATGAACGGACTT
GTCTGCGACCTTTCCCAGCACAACATACAGGTGAACAACATCGCTCCAAC
GGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGAGTGAACAACATCG
CTCCAACGGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGA
back to top