mRNA_H-elongata_contig103611.301.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig103611.301.1
Unique Name	mRNA_H-elongata_contig103611.301.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: D7FSQ4_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ4_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.520e-49
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            MD+S + FDE +A+NTRAPLLVSQVCL+GMIK K  KIVNITSQSAVIA K H+ YCASKAAMDGL++GLVCDL+QHNIQVNNIAPTVAWSDMG+K WG
Sbjct:  190 MDISSDTFDEVIAINTRAPLLVSQVCLQGMIKNKSGKIVNITSQSAVIATKAHASYCASKAAMDGLLHGLVCDLAQHNIQVNNIAPTVAWSDMGIKTWG 288

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A832EU15_9RHOB (Glucose 1-dehydrogenase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832EU15_9RHOB)

HSP 1 Score: 106 bits (265), Expect = 2.790e-26
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +D+SV+D+DET+AVN RAP ++SQV   GMI+++  KI+NI+SQ+ VIA+ DH+ Y  SK A++ L   L+ + + HNIQVN I PTV  + MG +VW
Sbjct:  106 VDLSVDDWDETMAVNVRAPFVLSQVLAPGMIERRQGKIINISSQTGVIALADHAAYATSKGALNALTKSLMAEWAPHNIQVNAICPTVVLTPMGREVW 203

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: UPI000D3E5D78 (glucose 1-dehydrogenase n=1 Tax=Acuticoccus kandeliae TaxID=2073160 RepID=UPI000D3E5D78)

HSP 1 Score: 106 bits (264), Expect = 3.930e-26
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            MD++VED+D T+AVN RAP L+++    GMI Q++ KIVNI+SQ+ VIA+ +H+ Y ASK A++ L   L  + +QHN+QVN I PTV  + MG +VW
Sbjct:  106 MDLTVEDWDLTMAVNVRAPFLLARALAPGMIAQRWGKIVNISSQTGVIALPEHAAYAASKGALNALTKSLTAEWAQHNVQVNAICPTVVMTPMGKQVW 203

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A8I1LNS6_9RHOB (SDR family oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A8I1LNS6_9RHOB)

HSP 1 Score: 105 bits (261), Expect = 9.690e-26
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +++SV D+D T+A+N RAP L+S+    GMI +K  KIVNI+SQ+ VIA+ DH+ Y ASK  ++ L   L+ +L+ HN+QVN I PTV  ++MG K+W
Sbjct:  100 IELSVADWDRTMAINLRAPFLLSRALAPGMIARKQGKIVNISSQTGVIAIPDHAAYAASKGGLNALTKSLMTELAPHNVQVNAICPTVVMTEMGQKIW 197

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A1G6A723_9HYPH (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6A723_9HYPH)

HSP 1 Score: 105 bits (261), Expect = 1.100e-25
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            ++ +VE +D T AVNTRAP L++Q     MI QK+ KI+N++SQ+  +A+ DH+ Y ASK A++ L   L C+ ++HNIQVN I PTV  + MG++VW
Sbjct:  106 LETTVEHWDHTFAVNTRAPFLLAQALAPQMIAQKWGKIINVSSQTGPLAIDDHAAYAASKGALNALTKSLTCEWAKHNIQVNAICPTVVMTPMGIRVW 203

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A7W0MMG9_9RHOB (SDR family oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7W0MMG9_9RHOB)

HSP 1 Score: 102 bits (254), Expect = 1.210e-24
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            ++++VED+D  +AVN RAP L++Q    GMI Q++ KIVNI+SQ+ VIA+ DH+ Y +SK  ++ L   L+ + ++HN+QVN I PTV  + MG  VWG
Sbjct:  106 LEMAVEDWDAIMAVNLRAPFLLAQALAPGMIAQRWGKIVNISSQTGVIALDDHAAYASSKGGLNALTKSLMAEWARHNVQVNAICPTVVMTPMGRAVWG 204

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A7C5IVK0_9HYPH (Glucose 1-dehydrogenase n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5IVK0_9HYPH)

HSP 1 Score: 102 bits (253), Expect = 1.700e-24
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +D+++E +D T+AVN RAP L+SQ     MI Q++ KI+NI+SQ+ VIA+KDH+ Y  SK A++ L   L+ + ++HNIQVN I PTV  + MG ++W
Sbjct:  106 LDLTLEQWDRTMAVNLRAPFLLSQALAPKMIAQRWGKIINISSQTGVIALKDHAAYATSKGALNALTKSLMAEWAEHNIQVNAICPTVVLTPMGKELW 203

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: V7ENK8_9RHOB (Short-chain dehydrogenase n=5 Tax=Rhodobacteraceae TaxID=31989 RepID=V7ENK8_9RHOB)

HSP 1 Score: 100 bits (248), Expect = 9.380e-24
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1

Query:    4 DVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            D+++ D+DET+AVN RAP L++Q     MI Q++ K++NI+SQ+ VIA+ DH+ Y  SK A++ L   L  + ++HN+QVN I PTV  + MG  VWG
Sbjct:  107 DLTLADWDETMAVNVRAPFLLAQALGPAMIAQRWGKVINISSQTGVIALDDHAAYATSKGALNALTKSLCAEWARHNVQVNAICPTVILTPMGKAVWG 204

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: UPI001F1AC034 (glucose 1-dehydrogenase n=1 Tax=Acuticoccus sp. M5D2P5 TaxID=2910977 RepID=UPI001F1AC034)

HSP 1 Score: 99.4 bits (246), Expect = 1.860e-23
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG 297
            ++++ ED+D ++AVN RAP L+S+     MI Q+  KIVNI+SQ+ VIA+ DH+ Y +SK A++ L   L+ + ++HNIQVN I PTV  + MG +VWG
Sbjct:  106 LELTAEDWDLSMAVNVRAPFLLSRALAPAMIAQRSGKIVNISSQTGVIALDDHAAYASSKGALNALTKSLMAEWARHNIQVNAICPTVVLTPMGKEVWG 204

[Close]

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Match: A0A7X3YXG8_9RHOB (SDR family oxidoreductase n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7X3YXG8_9RHOB)

HSP 1 Score: 99.0 bits (245), Expect = 2.320e-23
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1

Query:    1 MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAVKDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVW 294
            +D S ED+D T+A+N RAP L+++    GMI  K  KI+NI+SQ+ VIA+ +H  Y  SK  ++ L   L+ +L+ HNIQVN I PTV  ++MG KVW
Sbjct:  100 LDYSAEDWDRTMAINLRAPFLLAKGLAPGMIAAKAGKIINISSQTGVIALAEHVAYATSKGGLNALTKSLMVELAPHNIQVNAICPTVVMTEMGKKVW 197

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot

BLAST of mRNA_H-elongata_contig103611.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FSQ4_ECTSI	6.520e-49	79.80	Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec...	[more]
A0A832EU15_9RHOB	2.790e-26	51.02	Glucose 1-dehydrogenase n=1 Tax=Rhodobacteraceae b...	[more]
UPI000D3E5D78	3.930e-26	51.02	glucose 1-dehydrogenase n=1 Tax=Acuticoccus kandel...	[more]
A0A8I1LNS6_9RHOB	9.690e-26	48.98	SDR family oxidoreductase n=1 Tax=Rhodobacteraceae...	[more]
A0A1G6A723_9HYPH	1.100e-25	47.96	NAD(P)-dependent dehydrogenase, short-chain alcoho...	[more]
A0A7W0MMG9_9RHOB	1.210e-24	47.47	SDR family oxidoreductase n=1 Tax=Rhodobacteraceae...	[more]
A0A7C5IVK0_9HYPH	1.700e-24	47.96	Glucose 1-dehydrogenase n=1 Tax=Devosia sp. TaxID=...	[more]
V7ENK8_9RHOB	9.380e-24	46.94	Short-chain dehydrogenase n=5 Tax=Rhodobacteraceae...	[more]
UPI001F1AC034	1.860e-23	47.47	glucose 1-dehydrogenase n=1 Tax=Acuticoccus sp. M5...	[more]
A0A7X3YXG8_9RHOB	2.320e-23	47.96	SDR family oxidoreductase n=2 Tax=Rhodobacteraceae...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	165.6
Seed ortholog evalue	1.2e-38
Seed eggNOG ortholog	2880.D7FSQ4
Preferred name	DCXR
KEGG rclass	RC00102,RC00154,RC01491
KEGG ko	ko:K00081,ko:K03331
KEGG Reaction	R01904,R02581,R09420
KEGG Pathway	ko00040,ko00590,ko00980,ko01100,map00040,map00590,map00980,map01100
KEGG Module	M00014
GOs	GO:0003674,GO:0003824,GO:0004090,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005902,GO:0005903,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006006,GO:0006063,GO:0006064,GO:0006082,GO:0006116,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016651,GO:0016655,GO:0019318,GO:0019321,GO:0019323,GO:0019362,GO:0019585,GO:0019637,GO:0019640,GO:0019674,GO:0019752,GO:0022607,GO:0032787,GO:0034641,GO:0042802,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0043621,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046395,GO:0046483,GO:0046496,GO:0050038,GO:0051167,GO:0051186,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072524,GO:0090407,GO:0098858,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901135,GO:1901137,GO:1901159,GO:1901360,GO:1901564,GO:1901575,GO:1901576
EggNOG free text desc.	L-xylulose reductase (NAD ) activity
EggNOG OGs	KOG1207@1,KOG1207@2759
EC	1.1.1.10,1.1.1.184
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting category	other localisation
Exons	4
Model size	299
Cds size	297
Stop	0
Start	1

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig103611:64..2111+
coding sequence from alignment at H-elongata_contig103611:64..2111+

protein sequence of mRNA_H-elongata_contig103611.301.1

>prot_H-elongata_contig103611.301.1 ID=prot_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MDVSVEDFDETVAVNTRAPLLVSQVCLEGMIKQKYSKIVNITSQSAVIAV
KDHSVYCASKAAMDGLMNGLVCDLSQHNIQVNNIAPTVAWSDMGLKVWG

mRNA from alignment at H-elongata_contig103611:64..2111+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig103611.301.1 ID=mRNA_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-elongata_contig103611:64..2111+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGTCGGTAGAGGACTTCGACGAGACCGTCGCGGTAAACACTCG
CGCCCCACTCCTCGTCTCCCAGGTGTGTAGAGAAGTACACTTCGATAGAT
ACCCTTCGTGCCCACCCGGGTTGGCGCTGTTGGCAAAGCCCAGTAAAACA
TTCAACCCCAAACCTAGTCCCCTATAGATAATTTATACATCGATGAAAGT
GAAGCAACTCAGACAGATTAAGTGAAAATTGAATGACACTGAGGAATACC
TAGATCTGTGTAAAGTTTGATGAAGGTAAATAAATCAAGAATCCAGCCGC
GACAATCCCAACAGCATTCTTCGTTATTCAAGTAGATCGTTTTTTAAAGT
ATGAGAATTGAAGCCCTTAGGTCTTTTTGGTTTGTCTTGTAATATAGGAA
TGTGTGATCCGCGTGAGGGAAGCCATCCAACTTATTCTTCACTTTTCCGT
AATATTCGGAGCTGGAAGCCCCCCGGGTACTTACTTCATCTCCCTATTTT
TCCCCACAGCGACAAGGCTCACAATATGAAATAGCGCCTTTTTAAGGAGA
TCCCGCCACCATTTCGTTGAAGACGTTGGTATCCGCCGTATTTGTAGGGG
GAAATGAGGTCGTAAAGCCATGTCTCCAACAGAGTCTACCTCAAGTTACT
GGGGCGGGTGCCTTGTGTCTCACTCAGGTTTGTTTGGAGGGCATGATCAA
GCAAAAGTATAGCAAGATTGTGAATATCACCTCGCAAAGCGCCGTCATCG
CCGTCAAGGACCACAGTGTCTGTGAGAAGGGAGTCTGTTTTTTCTTGTGA
CACTAGTATATTTGAAACGGGAATGTCATTTTGAGGCCCTCGTAACGATA
TAGCTCTCTGTCTGACGTCGTCAAAATCCATATGCTGTGAGAGGCAGTGA
GAGCCTTCTAGCTCTCGATAAAATTATAACATGCGATGCATCTTCATCAT
GTACTGTATCTAACAATTGATGATGTAGCACGGTGTTACCCTTGTGGGTA
TAGATTGCTCTCGACGGCCGTTGTTCTATCCTGGTGGTCGATTTCTGAAC
ATACGGACGTACGCTGTTTTTCAAGCCGTGCTAAGGTGGTAGCATTCGTT
TTGTATTTCAAACGGTGCATTGCTGTCCACTCATAGCTCATTGCTACTGT
GTTTATGCGTGTCTCAGCTGGTGGTTAGGCTGCGGATCTGTGGGGTAGCT
ATAAGACGTATGCGCATATAATAGTAGGTAGGCATATCGCAATGAGTTGT
GAGATCCCCAAGCGCAGTGAATGTCGGAGATTACACTTACCCGACTTCGT
CGGTCCCACGTGTTTGTATTTATGGTGAGCGTAAATAAAGTGGTTCCGCT
GTTGTAGTAGACGCTGAAATCTAGATGCCCCTCATAATGACGCATGGGAT
CAGGGAACGCGTTCATTTGTCTCACGAACTCACAAATACTACCCTCTACT
GTGTTGCTCGTTATGTCTTACACCACGCCAGACTGTGCTTCGAAAGCCGC
CATGGATGGGCTTATGAACGGACTTGTCTGCGACCTTTCCCAGCACAACA
TACAGGTAAAACGCGAAACGACCCGTGGACTATTATTGGGGTCTAGAAGA
AGGGGAAGGGAGTGCTCAGTTTCCGCACGCGAGAAATCGTTTAGAGGAAG
ATAAATTGTAGACGAATAGCGCAAAAAAAGAATGCCTACAGTTGAAATGT
GGCAATCCTTATTGACTGATTATAGTGTTACCCATGGTTTGGAAGATAGA
TATGCGCGGGGTGTTTCCGTCTCGTACACTAACTTACCTTGGTCACGGCA
GCCAATAAGCTTTGCCCTGGAGGTCTTATATGTACGATACTCGGGTGCGA
GTCAAGTAATTGTTGCCGAAAGAGGTTGTTTATCCCTACAATAGGACAGC
GTCGTTGAGCATAATTGATAGTATGCTCAATAACATAACGCAACGTTGCA
TTAAAACCCTTTAATTACAACACACCTCATGTTTGCTCAAGGTGAACAAC
ATCGCTCCAACGGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGA

Coding sequence (CDS) from alignment at H-elongata_contig103611:64..2111+

>mRNA_H-elongata_contig103611.301.1 ID=mRNA_H-elongata_contig103611.301.1|Name=mRNA_H-elongata_contig103611.301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig103611:64..2111+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGTCGGTAGAGGACTTCGACGAGACCGTCGCGGTAAACACTCG
CGCCCCACTCCTCGTCTCCCAGATGGATGTGTCGGTAGAGGACTTCGACG
AGACCGTCGCGGTAAACACTCGCGCCCCACTCCTCGTCTCCCAGGTTTGT
TTGGAGGGCATGATCAAGCAAAAGTATAGCAAGATTGTGAATATCACCTC
GCAAAGCGCCGTCATCGCCGTCAAGGACCACAGTGTCTGTTTGTTTGGAG
GGCATGATCAAGCAAAAGTATAGCAAGATTGTGAATATCACCTCGCAAAG
CGCCGTCATCGCCGTCAAGGACCACAGTGTCTACTGTGCTTCGAAAGCCG
CCATGGATGGGCTTATGAACGGACTTGTCTGCGACCTTTCCCAGCACAAC
ATACAGACTGTGCTTCGAAAGCCGCCATGGATGGGCTTATGAACGGACTT
GTCTGCGACCTTTCCCAGCACAACATACAGGTGAACAACATCGCTCCAAC
GGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGAGTGAACAACATCG
CTCCAACGGTGGCGTGGTCCGACATGGGGCTGAAAGTCTGGGGA