mRNA_H-elongata_contig103610.300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103610.300.1
Unique NamemRNA_H-elongata_contig103610.300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103610.300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103610contigH-elongata_contig103610:1000..1331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.0989165-CDS-H-elongata_contig103610:999..13291622929571.0989165-CDS-H-elongata_contig103610:999..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103610 1000..1329 +
1691679075.2011044-CDS-H-elongata_contig103610:999..13291691679075.2011044-CDS-H-elongata_contig103610:999..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103610 1000..1329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103610.300.1prot_H-elongata_contig103610.300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103610 1000..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103610.300.1

>prot_H-elongata_contig103610.300.1 ID=prot_H-elongata_contig103610.300.1|Name=mRNA_H-elongata_contig103610.300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
ATVLVRVRILPVPTPNAAAPTPPSADRCRRRGPRDFSMGSLFSEFSAAEA
AIFFAALAARAMLIRLADGEGPSSRRTASRGGCRSLASTVGDPLGECKRG
AEAAASFFDS
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mRNA from alignment at H-elongata_contig103610:1000..1331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103610.300.1 ID=mRNA_H-elongata_contig103610.300.1|Name=mRNA_H-elongata_contig103610.300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=332bp|location=Sequence derived from alignment at H-elongata_contig103610:1000..1331+ (Himanthalia elongata Himel1 dioecious)
GCAACAGTGCTCGTCCGTGTCCGGATCCTCCCCGTCCCCACCCCCAATGC
CGCCGCTCCAACTCCACCTTCAGCTGACCGCTGCCGTCGCCGGGGGCCTC
GCGATTTTTCGATGGGTTCATTGTTCTCGGAGTTTAGCGCCGCGGAGGCA
GCCATTTTCTTTGCAGCACTGGCGGCGCGGGCGATGCTGATCCGCCTTGC
CGACGGAGAAGGGCCATCGTCGAGAAGAACGGCGTCGCGGGGCGGTTGCC
GGTCCTTGGCATCTACTGTCGGTGATCCGTTGGGCGAATGCAAGCGCGGC
GCCGAAGCAGCAGCATCATTTTTTGACAGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig103610:1000..1331+

>mRNA_H-elongata_contig103610.300.1 ID=mRNA_H-elongata_contig103610.300.1|Name=mRNA_H-elongata_contig103610.300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig103610:1000..1331+ (Himanthalia elongata Himel1 dioecious)
GCAACAGTGCTCGTCCGTGTCCGGATCCTCCCCGTCCCCACCCCCAATGC
CGCCGCTCCAACTCCACCTTCAGCTGACCGCTGCCGTCGCCGGGGGCCTC
GCGATTTTTCGATGGGTTCATTGTTCTCGGAGTTTAGCGCCGCGGAGGCA
GCCATTTTCTTTGCAGCACTGGCGGCGCGGGCGATGCTGATCCGCCTTGC
CGACGGAGAAGGGCCATCGTCGAGAAGAACGGCGTCGCGGGGCGGTTGCC
GGTCCTTGGCATCTACTGTCGGTGATCCGTTGGGCGAATGCAAGCGCGGC
GCCGAAGCAGCAGCATCATTTTTTGACAGCGCAACAGTGCTCGTCCGTGT
CCGGATCCTCCCCGTCCCCACCCCCAATGCCGCCGCTCCAACTCCACCTT
CAGCTGACCGCTGCCGTCGCCGGGGGCCTCGCGATTTTTCGATGGGTTCA
TTGTTCTCGGAGTTTAGCGCCGCGGAGGCAGCCATTTTCTTTGCAGCACT
GGCGGCGCGGGCGATGCTGATCCGCCTTGCCGACGGAGAAGGGCCATCGT
CGAGAAGAACGGCGTCGCGGGGCGGTTGCCGGTCCTTGGCATCTACTGTC
GGTGATCCGTTGGGCGAATGCAAGCGCGGCGCCGAAGCAGCAGCATCATT
TTTTGACAGC
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