mRNA_H-elongata_contig103566.297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103566.297.1
Unique NamemRNA_H-elongata_contig103566.297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.090e-41
Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            T   + L+  F K  +ILRNLGV KV+LWPRFHSLVAESLER PP+VEELVQGLT PTKEVQQAIVVLMDHTL+ELR +APSLD  ELTVESCIF +FDR
Sbjct:  295 TDEPESLLAGFGKLEKILRNLGVAKVFLWPRFHSLVAESLERRPPQVEELVQGLTAPTKEVQQAIVVLMDHTLRELRGAAPSLDSAELTVESCIFNSFDR 394
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.500e-41
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            T   + L+  F K  +ILRNLGV KV+LWPRFHSLVAESLER PP+VEELVQGLT PTKEVQQAIVVLMDHTL+ELR +APSLD +ELTVESCIF +FDR
Sbjct:  280 TDEPESLLAGFGKLEKILRNLGVGKVFLWPRFHSLVAESLERRPPQVEELVQGLTAPTKEVQQAIVVLMDHTLRELRGAAPSLDSSELTVESCIFNSFDR 379
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A087UTI3_STEMI (DNA repair endonuclease XPF (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087UTI3_STEMI)

HSP 1 Score: 84.3 bits (207), Expect = 7.270e-17
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            FS+  +I+RNL V  ++LWPRFH++VA S+E+  PEV E+   +T     +Q A++ LM   +KEL+   PSLD  ELTVE+ +  AFD+
Sbjct:  166 FSQVQRIMRNLFVKNLFLWPRFHAVVASSIEKAKPEVFEIHVSMTSAMTSIQIALLDLMSFCVKELKHINPSLDTDELTVENAVAKAFDK 255
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A4Y2HR43_ARAVE (DNA repair endonuclease XPF n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HR43_ARAVE)

HSP 1 Score: 84.3 bits (207), Expect = 7.320e-17
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 MTHNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            ++ NA      FS+  +++RNL V  ++LWPRFH++VA S+ER  P+VEE+   +T     +Q A++ LM+  +KEL+    SLD  ELTVE+ I  +FD+
Sbjct:  153 ISSNAAAFTRGFSQVQRVMRNLFVKNLFLWPRFHAVVASSIERAKPDVEEIHVPMTNAMTSIQMALLDLMNVCVKELKHINASLDTDELTVENAIAKSFDK 253
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: UPI001CA842C1 (DNA repair endonuclease XPF n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA842C1)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDRF 306
            T +A    + FS+  +++R L VTK+YLWPRFHS V + L +  PEV EL   LT     +Q A++ +M++ +KEL+R+   L+  ELTVE+ +   F +F
Sbjct:  293 TSSALSFTVGFSQVERVMRTLFVTKLYLWPRFHSTVKKCLSKREPEVVELHVSLTPKMLSIQTALLDIMNYIVKELKRNNKFLELDELTVENAVAKKFHKF 393
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A2L2YQH5_PARTP (DNA repair endonuclease XPF (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YQH5_PARTP)

HSP 1 Score: 78.2 bits (191), Expect = 3.640e-15
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            F++  +++RNL V  +++WPRFH++VA SLER  P+V E+   +T     +Q +++ LM+  +KEL+   PSLD  ELTVE+ I  +FD+
Sbjct:  163 FAQVQRVMRNLFVKHLFIWPRFHAVVASSLERAKPDVMEMHVPMTLAMTSIQISLLDLMNVCVKELKHINPSLDTDELTVENAIAKSFDK 252
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: K0T254_THAOC (ERCC4 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T254_THAOC)

HSP 1 Score: 79.0 bits (193), Expect = 5.720e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLD 255
            T N   L+  F+K  ++L+ L V K+YL+PRFHS VAE LE+NPP+VEEL Q LTG   E+Q  +   +   +++L++  P +D
Sbjct:   52 TDNPSALLRGFAKVEKVLKALQVPKLYLYPRFHSAVAEELEQNPPKVEELHQPLTGKMNEIQDTLAAAIRANIRDLKQKCPLID 135
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BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: UPI00077FC624 (DNA repair endonuclease XPF isoform X1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FC624)

HSP 1 Score: 78.6 bits (192), Expect = 7.790e-15
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            F++  +++RNL V  +++WPRFH++VA SLER  P+V E+   +T     +Q +++ LM+  +KEL+   PSLD  ELTVE+ I  +FD+
Sbjct:  163 FAQVQRVMRNLFVKHLFIWPRFHAVVASSLERAKPDVMEMHVPMTMAMTSIQISLLDLMNVCVKELKHINPSLDTDELTVENAIAKSFDK 252
[Close]
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A261XZ07_9FUNG (1-alkyl-2-acetylglycerophosphocholine esterase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XZ07_9FUNG)

HSP 1 Score: 78.6 bits (192), Expect = 7.950e-15
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFD 300
            F+     L+NL + KV+LWPRFH  V+ +LE    +V EL Q L+   + +Q AI+  MD  L ELRRS P++D  E TVE+ +F +FD
Sbjct:  168 FAPLQNTLKNLMLRKVHLWPRFHLTVSHTLEVYKADVIELRQPLSDNMESIQHAIIECMDACLSELRRSCPTVDVEEFTVENALFKSFD 256
[Close]
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A443NC47_9MAGN (ERCC4 domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NC47_9MAGN)

HSP 1 Score: 78.2 bits (191), Expect = 1.080e-14
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   22 LILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
            +I AF+K  +I++ L + +++LWPRFH LV+E LE+ PPEV ++   L+   K +Q+A+V  MD  LKELR++   +D  +LTVE+ +F +FD 
Sbjct:  167 MISAFAKAERIMKCLFIRRLHLWPRFHVLVSEQLEKTPPEVVDVRVPLSPLMKGIQKAVVGAMDACLKELRKTN-KVDVDDLTVENGLFKSFDE 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH45_ECTSI1.090e-4176.00ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEA6_9PHAE1.500e-4176.00ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A087UTI3_STEMI7.270e-1745.56DNA repair endonuclease XPF (Fragment) n=2 Tax=Ste... [more]
A0A4Y2HR43_ARAVE7.320e-1741.58DNA repair endonuclease XPF n=1 Tax=Araneus ventri... [more]
UPI001CA842C11.220e-1540.59DNA repair endonuclease XPF n=1 Tax=Leptopilina he... [more]
A0A2L2YQH5_PARTP3.640e-1542.22DNA repair endonuclease XPF (Fragment) n=1 Tax=Par... [more]
K0T254_THAOC5.720e-1544.05ERCC4 domain-containing protein n=1 Tax=Thalassios... [more]
UPI00077FC6247.790e-1542.22DNA repair endonuclease XPF isoform X1 n=1 Tax=Par... [more]
A0A261XZ07_9FUNG7.950e-1544.941-alkyl-2-acetylglycerophosphocholine esterase n=1... [more]
A0A443NC47_9MAGN1.080e-1443.62ERCC4 domain-containing protein n=1 Tax=Cinnamomum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103566contigH-elongata_contig103566:128..1190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D7FH45
Preferred nameRAD1
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG0442@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.7191873-CDS-H-elongata_contig103566:127..2501622929570.7191873-CDS-H-elongata_contig103566:127..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103566 128..250 -
1691679074.980543-CDS-H-elongata_contig103566:127..2501691679074.980543-CDS-H-elongata_contig103566:127..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103566 128..250 -
1622929570.7302701-CDS-H-elongata_contig103566:1007..11901622929570.7302701-CDS-H-elongata_contig103566:1007..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103566 1008..1190 -
1691679074.9907932-CDS-H-elongata_contig103566:1007..11901691679074.9907932-CDS-H-elongata_contig103566:1007..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103566 1008..1190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103566.297.1prot_H-elongata_contig103566.297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103566 128..1190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103566.297.1

>prot_H-elongata_contig103566.297.1 ID=prot_H-elongata_contig103566.297.1|Name=mRNA_H-elongata_contig103566.297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MTHNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEE
LVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFD
RF
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mRNA from alignment at H-elongata_contig103566:128..1190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103566.297.1 ID=mRNA_H-elongata_contig103566.297.1|Name=mRNA_H-elongata_contig103566.297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1063bp|location=Sequence derived from alignment at H-elongata_contig103566:128..1190- (Himanthalia elongata Himel1 dioecious)
ATGACACATAACGCAAAAAAACTTATTTTAGCTTTTTCAAAATTTGTCCA
GATTCTGCGGAATCTGGGAGTTACGAAGGTATACCTTTGGCCCAGGTTTC
ACAGCCTGGTGGCCGAGTCACTGGAGCGGAATCCACCGGAGGTCGAGGAG
CTCGTCCAGGGGCTTACGGGACCCACCAAAGAGGTTTGGATGGGGGCATT
CGGGGGAGGGAGAGGAGGGCAACGAGATGCCGTGGGCGAAAGAGTTTGGG
TCTCACCTTAGTATGTGATGTCTAAGGTCTTCTTGCATTCTACGTGCAGA
CTAAATCTTCTTGCATTCTGACTCGGGGGGCAAGGTACCTACCAAGCGGC
AATTTGGGATTAAGGATTTAAGCTTTTAATAATTTTGATATTTGGAAATT
GAATTTGGGAAGAAAAAAATATGTTTATTAAATAGTTATTTTGTTAATAA
TATTTTCAAGCAAGAATGTCGAAATCTTGGTTATATTTTTTCGAAAAAAG
TTAGGGCGAAAAGACCCCCGGTACTCAAAAATGCCAGTGGCCCTTTTCGC
TGTCTTTTTAGTAGAGTTCCGTCGCTATCAACCCCTGTCCCCCCCCCAGG
AATCCCTCCAAAAATAACCTCGTGTAACTGACGGTCACGAAGAAAGTACG
CCCAGGAGTGAGTTATATCGTTTTTTCAGGACACCCCTATCCTCTATCCT
CTCCTGTCATAGACAAGAACGCCTATTATTGTGTATATATGTATGTATGT
GTATATGTGTGTATTATGTATGTGCACGCTATCTCCCGGAAAAGGTCATT
TTGTCTTGCTTTTAGTCCCCACGGCGAGCGATATAATGTTTCCTCCCTCC
CTCTCTCCCTCCCTCCCTTGTCGATGCCAAAACGCCTTGACTGTCGGGAT
ATTTTTTGGTTTCTTGTCTCTCTGCTTCTGCGGGTGTCAGGTACAGCAAG
CCATCGTCGTCCTCATGGACCATACCCTGAAAGAATTACGGAGATCAGCG
CCTTCCTTGGACGGGACGGAGCTCACGGTCGAGAGCTGCATCTTCACCGC
TTTCGACAGGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig103566:128..1190-

>mRNA_H-elongata_contig103566.297.1 ID=mRNA_H-elongata_contig103566.297.1|Name=mRNA_H-elongata_contig103566.297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig103566:128..1190- (Himanthalia elongata Himel1 dioecious)
ATGACACATAACGCAAAAAAACTTATTTTAGCTTTTTCAAAATTTGTCCA
GATTCTGCGGAATCTGGGAGTTACGAAGGTATACCTTTGGCCCAGGTTTC
ACAGCCTGGTGGCCGAGTCACTGGAGCGGAATCCACCGGAGGTCGAGGAG
CTCGTCCAGGGGCTTACGGGACCCACCAAAGAGATGACACATAACGCAAA
AAAACTTATTTTAGCTTTTTCAAAATTTGTCCAGATTCTGCGGAATCTGG
GAGTTACGAAGGTATACCTTTGGCCCAGGTTTCACAGCCTGGTGGCCGAG
TCACTGGAGCGGAATCCACCGGAGGTCGAGGAGCTCGTCCAGGGGCTTAC
GGGACCCACCAAAGAGGTACAGCAAGCCATCGTCGTCCTCATGGACCATA
CCCTGAAAGAATTACGGAGATCAGCGCCTTCCTTGGACGGGACGGAGCTC
ACGGTCGAGAGCTGCATCTTCACCGCTTTCGACAGGTTTGTACAGCAAGC
CATCGTCGTCCTCATGGACCATACCCTGAAAGAATTACGGAGATCAGCGC
CTTCCTTGGACGGGACGGAGCTCACGGTCGAGAGCTGCATCTTCACCGCT
TTCGACAGGTTT
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