mRNA_H-elongata_contig103566.297.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI) HSP 1 Score: 155 bits (391), Expect = 1.090e-41 Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 1 Query: 4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
T + L+ F K +ILRNLGV KV+LWPRFHSLVAESLER PP+VEELVQGLT PTKEVQQAIVVLMDHTL+ELR +APSLD ELTVESCIF +FDR
Sbjct: 295 TDEPESLLAGFGKLEKILRNLGVAKVFLWPRFHSLVAESLERRPPQVEELVQGLTAPTKEVQQAIVVLMDHTLRELRGAAPSLDSAELTVESCIFNSFDR 394
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.500e-41 Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 1 Query: 4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
T + L+ F K +ILRNLGV KV+LWPRFHSLVAESLER PP+VEELVQGLT PTKEVQQAIVVLMDHTL+ELR +APSLD +ELTVESCIF +FDR
Sbjct: 280 TDEPESLLAGFGKLEKILRNLGVGKVFLWPRFHSLVAESLERRPPQVEELVQGLTAPTKEVQQAIVVLMDHTLRELRGAAPSLDSSELTVESCIFNSFDR 379
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A087UTI3_STEMI (DNA repair endonuclease XPF (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087UTI3_STEMI) HSP 1 Score: 84.3 bits (207), Expect = 7.270e-17 Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
FS+ +I+RNL V ++LWPRFH++VA S+E+ PEV E+ +T +Q A++ LM +KEL+ PSLD ELTVE+ + AFD+
Sbjct: 166 FSQVQRIMRNLFVKNLFLWPRFHAVVASSIEKAKPEVFEIHVSMTSAMTSIQIALLDLMSFCVKELKHINPSLDTDELTVENAVAKAFDK 255
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A4Y2HR43_ARAVE (DNA repair endonuclease XPF n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HR43_ARAVE) HSP 1 Score: 84.3 bits (207), Expect = 7.320e-17 Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1 Query: 1 MTHNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
++ NA FS+ +++RNL V ++LWPRFH++VA S+ER P+VEE+ +T +Q A++ LM+ +KEL+ SLD ELTVE+ I +FD+
Sbjct: 153 ISSNAAAFTRGFSQVQRVMRNLFVKNLFLWPRFHAVVASSIERAKPDVEEIHVPMTNAMTSIQMALLDLMNVCVKELKHINASLDTDELTVENAIAKSFDK 253
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: UPI001CA842C1 (DNA repair endonuclease XPF n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA842C1) HSP 1 Score: 80.9 bits (198), Expect = 1.220e-15 Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 Query: 4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDRF 306
T +A + FS+ +++R L VTK+YLWPRFHS V + L + PEV EL LT +Q A++ +M++ +KEL+R+ L+ ELTVE+ + F +F
Sbjct: 293 TSSALSFTVGFSQVERVMRTLFVTKLYLWPRFHSTVKKCLSKREPEVVELHVSLTPKMLSIQTALLDIMNYIVKELKRNNKFLELDELTVENAVAKKFHKF 393
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A2L2YQH5_PARTP (DNA repair endonuclease XPF (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YQH5_PARTP) HSP 1 Score: 78.2 bits (191), Expect = 3.640e-15 Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1 Query: 34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
F++ +++RNL V +++WPRFH++VA SLER P+V E+ +T +Q +++ LM+ +KEL+ PSLD ELTVE+ I +FD+
Sbjct: 163 FAQVQRVMRNLFVKHLFIWPRFHAVVASSLERAKPDVMEMHVPMTLAMTSIQISLLDLMNVCVKELKHINPSLDTDELTVENAIAKSFDK 252
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: K0T254_THAOC (ERCC4 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T254_THAOC) HSP 1 Score: 79.0 bits (193), Expect = 5.720e-15 Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 4 THNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLD 255
T N L+ F+K ++L+ L V K+YL+PRFHS VAE LE+NPP+VEEL Q LTG E+Q + + +++L++ P +D
Sbjct: 52 TDNPSALLRGFAKVEKVLKALQVPKLYLYPRFHSAVAEELEQNPPKVEELHQPLTGKMNEIQDTLAAAIRANIRDLKQKCPLID 135
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: UPI00077FC624 (DNA repair endonuclease XPF isoform X1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FC624) HSP 1 Score: 78.6 bits (192), Expect = 7.790e-15 Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1 Query: 34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
F++ +++RNL V +++WPRFH++VA SLER P+V E+ +T +Q +++ LM+ +KEL+ PSLD ELTVE+ I +FD+
Sbjct: 163 FAQVQRVMRNLFVKHLFIWPRFHAVVASSLERAKPDVMEMHVPMTMAMTSIQISLLDLMNVCVKELKHINPSLDTDELTVENAIAKSFDK 252
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A261XZ07_9FUNG (1-alkyl-2-acetylglycerophosphocholine esterase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XZ07_9FUNG) HSP 1 Score: 78.6 bits (192), Expect = 7.950e-15 Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 Query: 34 FSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFD 300
F+ L+NL + KV+LWPRFH V+ +LE +V EL Q L+ + +Q AI+ MD L ELRRS P++D E TVE+ +F +FD
Sbjct: 168 FAPLQNTLKNLMLRKVHLWPRFHLTVSHTLEVYKADVIELRQPLSDNMESIQHAIIECMDACLSELRRSCPTVDVEEFTVENALFKSFD 256
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Match: A0A443NC47_9MAGN (ERCC4 domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NC47_9MAGN) HSP 1 Score: 78.2 bits (191), Expect = 1.080e-14 Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 22 LILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEELVQGLTGPTKEVQQAIVVLMDHTLKELRRSAPSLDGTELTVESCIFTAFDR 303
+I AF+K +I++ L + +++LWPRFH LV+E LE+ PPEV ++ L+ K +Q+A+V MD LKELR++ +D +LTVE+ +F +FD
Sbjct: 167 MISAFAKAERIMKCLFIRRLHLWPRFHVLVSEQLEKTPPEVVDVRVPLSPLMKGIQKAVVGAMDACLKELRKTN-KVDVDDLTVENGLFKSFDE 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103566.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103566.297.1 >prot_H-elongata_contig103566.297.1 ID=prot_H-elongata_contig103566.297.1|Name=mRNA_H-elongata_contig103566.297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MTHNAKKLILAFSKFVQILRNLGVTKVYLWPRFHSLVAESLERNPPEVEEback to top mRNA from alignment at H-elongata_contig103566:128..1190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103566.297.1 ID=mRNA_H-elongata_contig103566.297.1|Name=mRNA_H-elongata_contig103566.297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1063bp|location=Sequence derived from alignment at H-elongata_contig103566:128..1190- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103566:128..1190- >mRNA_H-elongata_contig103566.297.1 ID=mRNA_H-elongata_contig103566.297.1|Name=mRNA_H-elongata_contig103566.297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig103566:128..1190- (Himanthalia elongata Himel1 dioecious)back to top |