mRNA_H-elongata_contig10356.296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10356.296.1
Unique NamemRNA_H-elongata_contig10356.296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10356.296.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.700e-60
Identity = 109/133 (81.95%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:  322 YAPNPPGIPAQVGYQYNPSGQAYGSIYYGQQGPIQSNPYQYSYPPHQYPPSASQYQ-GGGGQRFPGMPRGYPTTDYG------MGYGQMDYSGSNQYGLPHNGNTYMSDVGKEQYGDFSQDQFGMPP-MAGQG 696
            YAP PPG+PAQVGYQY PSGQAYGSIYYGQQGP+QSNPYQY YPPHQYPPSASQYQ GGGGQRFP MPRGYP T+YG      MGYGQMDYS S+QYG+P NGN YMSDVGKEQYGDF QDQFGMP  M+GQG
Sbjct:  771 YAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPPNGNGYMSDVGKEQYGDFGQDQFGMPQQMSGQG 903
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10356.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZT6_ECTSI1.700e-6081.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10356contigH-elongata_contig10356:4300..8132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue1.3e-53
Seed eggNOG ortholog2880.D7FZT6
EggNOG OGs28M4J@1,2QTMG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size888
Cds size888
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10356.296.1prot_H-elongata_contig10356.296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10356 4300..8132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.5897362-CDS-H-elongata_contig10356:4299..45271622929570.5897362-CDS-H-elongata_contig10356:4299..4527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 4300..4527 -
1691679074.912551-CDS-H-elongata_contig10356:4299..45271691679074.912551-CDS-H-elongata_contig10356:4299..4527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 4300..4527 -
1622929570.6096148-CDS-H-elongata_contig10356:4963..50231622929570.6096148-CDS-H-elongata_contig10356:4963..5023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 4964..5023 -
1691679074.9259305-CDS-H-elongata_contig10356:4963..50231691679074.9259305-CDS-H-elongata_contig10356:4963..5023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 4964..5023 -
1622929570.62255-CDS-H-elongata_contig10356:5246..53191622929570.62255-CDS-H-elongata_contig10356:5246..5319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 5247..5319 -
1691679074.9352548-CDS-H-elongata_contig10356:5246..53191691679074.9352548-CDS-H-elongata_contig10356:5246..5319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 5247..5319 -
1622929570.6360235-CDS-H-elongata_contig10356:6335..64641622929570.6360235-CDS-H-elongata_contig10356:6335..6464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 6336..6464 -
1691679074.9503787-CDS-H-elongata_contig10356:6335..64641691679074.9503787-CDS-H-elongata_contig10356:6335..6464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 6336..6464 -
1622929570.64922-CDS-H-elongata_contig10356:7488..75981622929570.64922-CDS-H-elongata_contig10356:7488..7598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 7489..7598 -
1691679074.9590027-CDS-H-elongata_contig10356:7488..75981691679074.9590027-CDS-H-elongata_contig10356:7488..7598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 7489..7598 -
1622929570.6693106-CDS-H-elongata_contig10356:7844..81321622929570.6693106-CDS-H-elongata_contig10356:7844..8132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 7845..8132 -
1691679074.970442-CDS-H-elongata_contig10356:7844..81321691679074.970442-CDS-H-elongata_contig10356:7844..8132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10356 7845..8132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10356.296.1

>prot_H-elongata_contig10356.296.1 ID=prot_H-elongata_contig10356.296.1|Name=mRNA_H-elongata_contig10356.296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
NFYGSSVSTLSSAAKPAPGGVYSAATSSSAHGGGGTTGSGVGVGGHGSSS
HGSPSTTASKPLYGAQPSGVPSGTAVSGTGGPGAMSGMQPGGQPQQAPPQ
QHQQQQGYAPNPPGIPAQVGYQYNPSGQAYGSIYYGQQGPIQSNPYQYSY
PPHQYPPSASQYQGGGGQRFPGMPRGYPTTDYGMGYGQMDYSGSNQYGLP
HNGNTYMSDVGKEQYGDFSQDQFGMPPMAGQGAGASGAGTSGAGVSGGGV
GVGVGGSTSSSSAGGGSGIGGAGGGVDKASGGPLSATAGGGGAGGA
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mRNA from alignment at H-elongata_contig10356:4300..8132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10356.296.1 ID=mRNA_H-elongata_contig10356.296.1|Name=mRNA_H-elongata_contig10356.296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3833bp|location=Sequence derived from alignment at H-elongata_contig10356:4300..8132- (Himanthalia elongata Himel1 dioecious)
AACTTTTACGGGAGTAGCGTCTCTACCCTCTCGAGCGCCGCCAAGCCCGC
GCCCGGAGGCGTGTACTCGGCAGCAACGTCGTCCTCTGCTCACGGTGGCG
GTGGTACAACCGGCAGTGGCGTTGGCGTTGGTGGGCACGGTAGCAGCTCC
CACGGCTCCCCCAGCACCACCGCGTCCAAGCCCTTGTACGGTGCTCAGCC
GTCGGGAGTTCCAAGTGGAACTGCTGTTTCTGGTACCGGAGGACCAGGGG
CAATGTCAGGAATGCAGCCGGGAGGTCAACCCCAGCAGGTTAGTTATGTA
ATCTGTTTTTTTTTGTGTTTTTCATTGGCGAAAAGAAGCAGAAATGTGCA
GTACCGTGGGATTAACACATGAGTCGCGGGTTTTATTTTTTCCTTACTGG
CATATTTCTTCTGCTTTTTTCTATTTTATGGCTGAAAGGCAAGAAACTTA
TGTTTTTTTTGTGTGTTTTTGGTTTTAGTGCTCATTTGATGCCTCTGCTT
TCTGTTTGATTTTTGCGTTCCGTTTTCCCCTCAGGCGCCTCCACAGCAAC
ACCAGCAGCAACAGGGTTACGCGCCGAATCCACCAGGCATTCCGGCCCAG
GTCGGCTACCAGTACAACCCCTCTGGTCAGGCCTACGGGAGCATGTGAGT
TATTCGTCGGATGTATTGTCAGAAAGCTTCTGGTTTGAAGCTGTTTTGGA
TCAAACTTTGAACTGCAAGCATAACTTGAGAGCGTATAGTTTAGAATGTA
CCAAAATATTCCAAAGGATGTGAGGTGACGATTTTGGATCGTCCCTGGGT
GTACCCATCGCGAGGTGACGTCATCCTTCAGATGTGACCCGTGACCCTAG
TGCAGTACTATATCTTTAAAGACCGCGAACCGTGTTGGTGTTGTGATAAG
TCGGTGTTGAGCTTTTGTGTCTTAAGGTTATTACAAAGAAAAGTGAAATG
ATCAAATAATCCCCTTTATTATTGGCGTAGCTCTATTGGCCCTCGCTGCA
TCCATTTAGAGAGAGAAGGTAGGGGTGGCATGAGGGCCTGCTTTTTTATG
TGTGGTATAATTTATTTTGTTTTGGGTATAATAGTGTTATTCGGTTTACT
GACACTTTTGAGGAGGAAAAGAAAATGTCGAGTATTGGAAACCCCCATTC
GCGTCTTGTGGTGTGGTGTGGTGCAGTTGTAGCGCGCGATCGAGCACGAC
CTAAAGGTAAACATGTCGACAGTTGCTCTTGTTCGAAGTCGAGATGCCAA
TCATGTCGCACCTTTTAATTTTAAAACAGCACGTCACCAACCATGAAGCG
AACGCACTGTATTTCTCTCCCTCTGTATTTATATATGTATTTAAACCATC
TTTTATCAAACCTCTCAGACCTCGGATATATGTACTCAGACCCATGAGTC
TAAATAATCGAGTGTTGGCAAACAGCCCCTAAAGCCCATGAGTCTAAATA
ATCGAGTCTTGTCGACTGGCTTACCGGGCGAGTCGTATCCACAACGCCAA
TTTTTCGTTTTTTAAAAATTTGGTTGAACATGGGCCGCTTTTCTTTTTCT
TTCCTTTCGCCTCCTGACATTACCATATACTATAAAACAATATATATATA
CATATACTGTATAAAACAATATACCTTTTCATCCTTGCACATTTGACGAT
GCGATCGGCGTTCACCAGATACTACGGGCAGCAGGGACCGATTCAGTCAA
ACCCTTACCAATACAGCTACCCTCCGCACCAGTATCCTCCCAGCGCCAGC
CAGTATCAAGGCGGTGGGGGGCAGCGCTTCCCCGGCATGCCTCGTGGGTG
AGTGTTTTTGTTTTTGTCGGAGGGAGTGAGGAAAGCGGTTTTTGTTATTT
TGCGGATTTTTATTTTTATTTTTTAATCTACCAGGAGTATTAACTTACTA
TTTCCTGGTCTTTTAAAAAAAATAACCAGAGAGATTATACTGGATATAGT
GGCAAATGGACCAAGAGGATGAGCGAGTTTTGTATGAAGCAACTGGATTT
TAAGTTTTATGTTGAACTTAGTATAGAAAAAAAAACAGATCGAGTTCCAT
AGGGGTTTTCTTTCAAGAGAGGTCCCCTTGGCTTTACCACTAATGGTGTA
ATGTTTGATTATGTTTCTATTTTTTTTAGCAAAAAGGAAAAAACAAAAAT
ATCAAGGAGGCGCTTTAAAAGATGGCTAAAAATTGAAGCAAATGTAATGT
TTTTCTCTCATCAATCAACTCTTTGCCGCAAGAGAATCTTCAAGATGCCG
ATTTAATATAGCAATTTTCCTTTCGAGGAGGGCGGGGGTGTACACTATCT
ATCACAAGTAATCTCTCCGGTATTTTTTTAGGGTTGAGGATTTGTTGGAT
GTTTAGAGAGGGGGAAGGGGTTGGTATCGCCATCTATATCGTTTGCTTGA
GCGCTCGATTATTATCGTCCCACGCGCCTCATTCCAGAAACGATGGCAAA
ATCAGACACGCTTCTCCCCCACTCTCATCTTGGCGTCGTCCGTCAAGAGG
CCGAGCAGTGAGGGGGTAGCAAGGGCCGTGTTTCAAAATCGTGTCGTCTC
CGACTCAAGATCTAGTAGACCAATGTGGACCCTAGATCCCCACGGAACGG
CGCGTTAGCCGCGCGCCCACATCTTGTTTTGGAAGTAGTATTAGTGTTCT
GTAGTAGTTGTCATAAGCTGTTAGTGGCTTAACCGCCTTAACCGCCGCGG
CGATAGATTTAGTGATGACGGTCGATAATTTTTACCAAGCGTTTTCTTTC
TGTCCGGATTTGGCTTCACTAAAACGTTCTCGTGTTCTCGTCTGTGTGTA
ACCCGGCGGCCAGATATCCGACGACTGACTACGGGATGGGCTACGGCCAG
ATGGACTACTCTGGAAGCAACCAGTACGGATTGCCGGTGAATATATTTTC
GCTCTCGAGGGGTTAGGTTGTAGAACATGATCCGATCCCGAGATGTCTAG
GCTAGGTTGCTGAACGTCGCGCCATGTGGCACGGTTCTCCTCAGCTAGCT
TCGACGGTGATTTCTTATTTCCTTCATCAAAATTTCTTTATTCCTCTCCC
TCCCAAAACGTGTCTTTTCACTGCTCTTGCGTTGCCAACTCGCACTTAAA
CCTCGTCAGCACAACGGTAACACGTACATGAGCGATGTTGGCAAGGAACA
ATATGGCGACTTCTCTCAGGTGCGTCCTTGCACGCGGGGGAATTTGGAGC
TGTTTGCTTGATTGAACTCTCCTTTACATAGCGGAATAGATGGTAACCTC
CTCCTCATGTGGGGTTTTTGTGCAGACAGCAATGTACACACTCGAACCTG
ACGATAGTTGCTCCCCCTGGAATGTTCGGCGGGGTTGAATATGTTGATTT
TTTTATTTCGGTTTGGTACACGGCGCTTTAATATGCATTTATGCCGGCGC
GGCTTATGCTCTTGGCTGTATGTATAGAGGACTACCGACATTTTCCATAA
TCGATGGACGAAGTACCGTTCACGAGCATAAGTGCATTGCTATGGTATTT
CCCGTTTCGTGGTCGGAGCTATGGCACTTACCGAATCTCGAGTCTTCTTT
CTCCTTCTCCTTTTCCTAACATTCTCATTCTCCGACTTATGCGTCACGCG
CGAAGGACCAGTTTGGCATGCCCCCGATGGCAGGCCAGGGCGCAGGCGCC
TCGGGTGCAGGGACCAGTGGTGCGGGTGTTAGCGGTGGCGGTGTTGGTGT
TGGTGTGGGCGGATCGACGTCGTCCTCGTCCGCTGGTGGTGGGAGCGGAA
TTGGCGGCGCCGGAGGTGGCGTGGATAAGGCCTCGGGGGGACCGCTCTCC
GCCACTGCTGGCGGCGGGGGTGCCGGAGGTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig10356:4300..8132-

>mRNA_H-elongata_contig10356.296.1 ID=mRNA_H-elongata_contig10356.296.1|Name=mRNA_H-elongata_contig10356.296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig10356:4300..8132- (Himanthalia elongata Himel1 dioecious)
AACTTTTACGGGAGTAGCGTCTCTACCCTCTCGAGCGCCGCCAAGCCCGC
GCCCGGAGGCGTGTACTCGGCAGCAACGTCGTCCTCTGCTCACGGTGGCG
GTGGTACAACCGGCAGTGGCGTTGGCGTTGGTGGGCACGGTAGCAGCTCC
CACGGCTCCCCCAGCACCACCGCGTCCAAGCCCTTGTACGGTGCTCAGCC
GTCGGGAGTTCCAAGTGGAACTGCTGTTTCTGGTACCGGAGGACCAGGGG
CAATGTCAGGAATGCAGCCGGGAGGTCAACCCCAGCAGAACTTTTACGGG
AGTAGCGTCTCTACCCTCTCGAGCGCCGCCAAGCCCGCGCCCGGAGGCGT
GTACTCGGCAGCAACGTCGTCCTCTGCTCACGGTGGCGGTGGTACAACCG
GCAGTGGCGTTGGCGTTGGTGGGCACGGTAGCAGCTCCCACGGCTCCCCC
AGCACCACCGCGTCCAAGCCCTTGTACGGTGCTCAGCCGTCGGGAGTTCC
AAGTGGAACTGCTGTTTCTGGTACCGGAGGACCAGGGGCAATGTCAGGAA
TGCAGCCGGGAGGTCAACCCCAGCAGGCGCCTCCACAGCAACACCAGCAG
CAACAGGGTTACGCGCCGAATCCACCAGGCATTCCGGCCCAGGTCGGCTA
CCAGTACAACCCCTCTGGTCAGGCCTACGGGAGCATGCGCCTCCACAGCA
ACACCAGCAGCAACAGGGTTACGCGCCGAATCCACCAGGCATTCCGGCCC
AGGTCGGCTACCAGTACAACCCCTCTGGTCAGGCCTACGGGAGCATATAC
TACGGGCAGCAGGGACCGATTCAGTCAAACCCTTACCAATACAGCTACCC
TCCGCACCAGTATCCTCCCAGCGCCAGCCAGTATCAAGGCGGTGGGGGGC
AGCGCTTCCCCGGCATGCCTCGTGGATACTACGGGCAGCAGGGACCGATT
CAGTCAAACCCTTACCAATACAGCTACCCTCCGCACCAGTATCCTCCCAG
CGCCAGCCAGTATCAAGGCGGTGGGGGGCAGCGCTTCCCCGGCATGCCTC
GTGGATATCCGACGACTGACTACGGGATGGGCTACGGCCAGATGGACTAC
TCTGGAAGCAACCAGTACGGATTGCCGATATCCGACGACTGACTACGGGA
TGGGCTACGGCCAGATGGACTACTCTGGAAGCAACCAGTACGGATTGCCG
CACAACGGTAACACGTACATGAGCGATGTTGGCAAGGAACAATATGGCGA
CTTCTCTCAGCACAACGGTAACACGTACATGAGCGATGTTGGCAAGGAAC
AATATGGCGACTTCTCTCAGGACCAGTTTGGCATGCCCCCGATGGCAGGC
CAGGGCGCAGGCGCCTCGGGTGCAGGGACCAGTGGTGCGGGTGTTAGCGG
TGGCGGTGTTGGTGTTGGTGTGGGCGGATCGACGTCGTCCTCGTCCGCTG
GTGGTGGGAGCGGAATTGGCGGCGCCGGAGGTGGCGTGGATAAGGCCTCG
GGGGGACCGCTCTCCGCCACTGCTGGCGGCGGGGGTGCCGGAGGTGCGGA
CCAGTTTGGCATGCCCCCGATGGCAGGCCAGGGCGCAGGCGCCTCGGGTG
CAGGGACCAGTGGTGCGGGTGTTAGCGGTGGCGGTGTTGGTGTTGGTGTG
GGCGGATCGACGTCGTCCTCGTCCGCTGGTGGTGGGAGCGGAATTGGCGG
CGCCGGAGGTGGCGTGGATAAGGCCTCGGGGGGACCGCTCTCCGCCACTG
CTGGCGGCGGGGGTGCCGGAGGTGCG
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