mRNA_H-elongata_contig10343.285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10343.285.1
Unique NamemRNA_H-elongata_contig10343.285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: D8LQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.100e-19
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 2
Query: 2189 EAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVVIGDAGKVFGNITSESITIGPE 2461
            EAVV+ + S TGLLEC  +LR++G   G+L+STG V V  TG I G L+ +KFLLV+GQV G+V C+ V++ + GKVFG+I+S  +T+GP+
Sbjct:  117 EAVVALTMSLTGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGHLKGLKFLLVEGQVDGDVVCEEVMVVNEGKVFGDISSARVTVGPQ 207          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: A0A6H5KXR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.730e-13
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query: 2183 ELEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVVIGDAGKVFGNITSESITIGPEAMMRGKLDVVENISE 2506
            E EAVV+ + S  G+LEC  +LR++G   G+L+STG V V  TG                    +V CD V++ + GKVFG+I+S  +T+GP++ +RG+L VVE++ E
Sbjct:  703 EPEAVVARTMSLKGMLECGRSLRMEGTFQGDLISTGRVVVAPTGXXXXXXXXXXXXXXXXXXXXDVVCDEVMVVNEGKVFGDISSARVTVGPQSTIRGRLTVVEDMDE 810          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: D7G0L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-10
Identity = 38/99 (38.38%), Postives = 64/99 (64.65%), Query Frame = 2
Query: 2180 QELEAVVSESCSFTGLLECACTLRVDGKLAGELVST-GSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVVIGDAGKVFGNITSESITIGPEAMMR 2473
            Q+ E++V+E+    G LE    LRVDG+  GEL++  GS+ VG  G ++GDL++++ + V+G V GNV+ + V I +AG + G++    +T+ P A +R
Sbjct:   89 QKPESMVAETLRMKGELEFTRLLRVDGRFEGELITDKGSLVVGPKGEVVGDLKNMQEVYVEGIVRGNVFANDVKIKNAGMLLGDVQCMCLTLDPTASIR 187          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: UPI001409D6AF (polymer-forming cytoskeletal protein n=1 Tax=Sphingobacterium chungjuense TaxID=2675553 RepID=UPI001409D6AF)

HSP 1 Score: 63.5 bits (153), Expect = 5.560e-8
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 2
Query: 2183 ELEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVVIGDAGKVFGNITSESITIGPEAMMRGKLDVVE 2494
            ++  V++E  S  G L  A +LRVDGK+ G +     V +G +  + GD+ S + L+V G +TG+V C T+ +  AGK++GN++    ++     + G + V +
Sbjct:   19 QISTVIAEGISIEGDLIGAESLRVDGKIKGNIRIGKGVIIGESAYVDGDI-SCETLIVYGHITGDVQCKTLTLKSAGKLYGNVSMTQFSVDMGGQLIGAVTVAD 121          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: A0A7V6Q1G7_9FIRM (Polymer-forming cytoskeletal protein n=1 Tax=Thermoanaerobacterales bacterium TaxID=2304039 RepID=A0A7V6Q1G7_9FIRM)

HSP 1 Score: 63.2 bits (152), Expect = 8.160e-8
Identity = 31/102 (30.39%), Postives = 57/102 (55.88%), Query Frame = 2
Query: 2186 LEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCD-TVVIGDAGKVFGNITSESITIGPEAMMRGKLDV 2488
            ++ ++     F G ++ A  LR++GK+ GE+ STG V +   G +  D+++ +  ++ G  +GNVW +  + I   GKV G+I   SI I    ++ GK ++
Sbjct:   16 VDTILGSGTEFNGKIKAAGILRIEGKVEGEIESTGDVIITENGVVNADIKA-RHAVIAGTYSGNVWLEGKIEIRSTGKVIGDIKVASIVIEDGGLLEGKCEM 116          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: A0A3D5KJ92_CLOSP (Cell shape determination protein CcmA n=2 Tax=Clostridia TaxID=186801 RepID=A0A3D5KJ92_CLOSP)

HSP 1 Score: 62.8 bits (151), Expect = 8.440e-8
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 2
Query: 2186 LEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCD-TVVIGDAGKVFGNITSESITIGPEAMMRGKLDVVE 2494
            +E+++ E C+  G L     LR+DG + G +     V +G   +I GDL + K  +V G++ GNV CD ++ +  +GK+ G+IT E +++    ++ GK  VV+
Sbjct:   13 IESLIGEQCNIAGDLNGGGLLRIDGSIEGNVNWQDDVILGVFSTINGDL-TCKNAVVAGKINGNVVCDGSLSVESSGKILGDITIEKLSVKEGGIINGKCSVVK 115          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: UPI001C476A22 (polymer-forming cytoskeletal protein n=1 Tax=Chryseobacterium sp. F4 TaxID=2852098 RepID=UPI001C476A22)

HSP 1 Score: 62.4 bits (150), Expect = 1.270e-7
Identity = 32/99 (32.32%), Postives = 56/99 (56.57%), Query Frame = 2
Query: 2186 LEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVVIGDAGKVFGNITSESITIGPEAMMRGKL 2482
            +  V+     FTG ++ + T+++DGK+ G +     V +G    I GDL+S K ++V G + GN++C+ ++I   G V G+I +++I I       GKL
Sbjct:   20 ISTVLGSEIMFTGDIQGSQTIKIDGKVKGNVQVENGVILGEKAHIEGDLKS-KNIIVFGNILGNIYCNELIIKKCGTVNGDIQTKTIEIEMGGKYNGKL 117          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: A0A1F7RQC2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Schekmanbacteria bacterium RBG_13_48_7 TaxID=1817878 RepID=A0A1F7RQC2_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.780e-7
Identity = 31/103 (30.10%), Postives = 64/103 (62.14%), Query Frame = 2
Query: 2183 ELEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVV-IGDAGKVFGNITSESITIGPEAMMRGKLDV 2488
            E++A V E  +F G+L    T+R+DG++ GE+++ G++ VG+T  +  +++  K + + G+V G++    VV I  +GKV+G+I + ++ I    + +G  ++
Sbjct:   11 EIKAFVGEGTTFKGVLMYEGTIRIDGRVEGEIITDGNLVVGKTAVVEAEIKVGK-ISISGKVVGSITAKEVVEIHPSGKVYGDIRTPALIIEEGVIFQGNCEM 112          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: UPI000BB7BAF1 (polymer-forming cytoskeletal protein n=1 Tax=Bacillus sp. FJAT-44876 TaxID=2011013 RepID=UPI000BB7BAF1)

HSP 1 Score: 61.2 bits (147), Expect = 4.430e-7
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query: 2183 ELEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWCDTVV-IGDAGKVFGNITSESITIGPEAMMRGK 2479
            E+  VV E  +FTG LE   ++R+DGK+ GE+   G VT+G+ G +  DL++ + L + G++ GNV  +  + I D+G++ G     +I I       G+
Sbjct:   13 EISTVVGEETTFTGTLEVNSSIRIDGKVFGEVKCYGDVTLGKEGYVENDLKA-RNLFLAGKIQGNVKVEGKIHIYDSGRLDGKAEMSTIIIDENGYFNGE 111          
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Match: A0A661XFJ0_9BACT (Cell shape determination protein CcmA n=1 Tax=Caldiserica bacterium TaxID=2052147 RepID=A0A661XFJ0_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 5.750e-7
Identity = 33/98 (33.67%), Postives = 59/98 (60.20%), Query Frame = 2
Query: 2189 EAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSIIGDLRSIKFLLVDGQVTGNVWC-DTVVIGDAGKVFGNITSESITIGPEAMMRGK 2479
            ++V +E  S  G + C  +LRV+GK+ G +   G +T+  +     D+ + K +++ GQV GN+   +TV I  +GKV+G++T++ I+I   A+  GK
Sbjct:   20 QSVFAEDLSVKGDIVCPGSLRVEGKIEGSIKGKGIITIAESAVAKADIDAAKVVVL-GQVEGNIIATETVEIVASGKVYGDVTTDKISIEEGAVFTGK 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10343.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQJ1_ECTSI3.100e-1952.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXR1_9PHAE7.730e-1339.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0L1_ECTSI1.090e-1038.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001409D6AF5.560e-831.73polymer-forming cytoskeletal protein n=1 Tax=Sphin... [more]
A0A7V6Q1G7_9FIRM8.160e-830.39Polymer-forming cytoskeletal protein n=1 Tax=Therm... [more]
A0A3D5KJ92_CLOSP8.440e-832.69Cell shape determination protein CcmA n=2 Tax=Clos... [more]
UPI001C476A221.270e-732.32polymer-forming cytoskeletal protein n=1 Tax=Chrys... [more]
A0A1F7RQC2_9BACT1.780e-730.10Uncharacterized protein n=1 Tax=Candidatus Schekma... [more]
UPI000BB7BAF14.430e-734.00polymer-forming cytoskeletal protein n=1 Tax=Bacil... [more]
A0A661XFJ0_9BACT5.750e-733.67Cell shape determination protein CcmA n=1 Tax=Cald... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10343contigH-elongata_contig10343:1260..8639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog653948.CCA14292
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs2RXV0@2759,COG1664@1
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-10_005860.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size5016
Cds size2652
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.455466-UTR-H-elongata_contig10343:1259..16291622929569.455466-UTR-H-elongata_contig10343:1259..1629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10343 1260..1629 +
1691679074.4448519-UTR-H-elongata_contig10343:1259..16291691679074.4448519-UTR-H-elongata_contig10343:1259..1629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10343 1260..1629 +
1622929569.555583-UTR-H-elongata_contig10343:6645..86391622929569.555583-UTR-H-elongata_contig10343:6645..8639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10343 6646..8639 +
1691679074.5247343-UTR-H-elongata_contig10343:6645..86391691679074.5247343-UTR-H-elongata_contig10343:6645..8639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10343 6646..8639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.476243-CDS-H-elongata_contig10343:1629..29131622929569.476243-CDS-H-elongata_contig10343:1629..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 1630..2913 +
1691679074.4570398-CDS-H-elongata_contig10343:1629..29131691679074.4570398-CDS-H-elongata_contig10343:1629..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 1630..2913 +
1622929569.496542-CDS-H-elongata_contig10343:3592..41531622929569.496542-CDS-H-elongata_contig10343:3592..4153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 3593..4153 +
1691679074.468685-CDS-H-elongata_contig10343:3592..41531691679074.468685-CDS-H-elongata_contig10343:3592..4153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 3593..4153 +
1622929569.5151088-CDS-H-elongata_contig10343:4405..45551622929569.5151088-CDS-H-elongata_contig10343:4405..4555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 4406..4555 +
1691679074.480813-CDS-H-elongata_contig10343:4405..45551691679074.480813-CDS-H-elongata_contig10343:4405..4555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 4406..4555 +
1622929569.5323489-CDS-H-elongata_contig10343:4987..50831622929569.5323489-CDS-H-elongata_contig10343:4987..5083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 4988..5083 +
1691679074.492279-CDS-H-elongata_contig10343:4987..50831691679074.492279-CDS-H-elongata_contig10343:4987..5083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 4988..5083 +
1622929569.5450444-CDS-H-elongata_contig10343:6084..66451622929569.5450444-CDS-H-elongata_contig10343:6084..6645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 6085..6645 +
1691679074.5148206-CDS-H-elongata_contig10343:6084..66451691679074.5148206-CDS-H-elongata_contig10343:6084..6645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10343 6085..6645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10343.285.1prot_H-elongata_contig10343.285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10343 1630..6645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10343.285.1

>prot_H-elongata_contig10343.285.1 ID=prot_H-elongata_contig10343.285.1|Name=mRNA_H-elongata_contig10343.285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=884bp
MPDTNIADSAQAKSQVEPSSSLETVSKLDLELERHGDTLGTINSAASSDF
FKGKNSPSGLEGTATTLSLSDDQDGTLAPNDSKGFQGLDTLGDKKESVLT
AVEEQPPGTLLQVQHNSWNLRQQPSKVPPPSLWPHQVSTREKVSQHASPN
GSQDYSRETAAAGATRETNNVWESSTVDGVACPASRFNPHPQQVDATGRQ
VQPLQYTDACEASTAHLRSGPQDVDVVDATGRGRKDWQASLPQRSSFHAV
GYPAAEIAYPSRKAGLPPRPGSWEAGISSESRLARIGKQGQHSPPLNFMA
SSSKVATTRESRNLSARAAAAAAAAAAVLGHDFRAKSESNVEAPFHSSLA
PSTQRGQVAAVAPMATVSGFDPGSRATPGRAPGRRRAFFGSKEGLAQRKG
HKIMNYLKGSLTTAGDERANVSCVTIATSNDITQQRMPAPDAAHRVRTPA
STPGTRRKGSTHFSTPGAWRSRSASTRRSDSAILPNNLEADEKHERIAAA
PSGVLGTAVVAGTETPTDGDAGHTLALADKGVVDYKNDDNDMLEVDKNID
GHNAARSDSPAGAVCGEEERTPAMEEKDGGGTIAVAPEDLEEEIDEKEEE
QKEQELEAVVSESCSFTGLLECACTLRVDGKLAGELVSTGSVTVGRTGSI
IGDLRSIKFLLVDGQVTGNVWCDTVVIGDAGKVFGNITSESITIGPEAMM
RGKLDVVENISEARAHAFAQDEIRPLMKEEEEEVESVESKTPQDSLKAKP
GVKCVATDVEARAGDSHNEAELDAAKGVSVTGAEGKGCNSQEREMQDCVS
PAFAEEGEAKNDVIDTVDAAGNARSAKADAGIAMVDSRAAEVDLSDSRLM
MGQAVAGASEGSVVGASSTEPRHSDQQEKREDL*
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mRNA from alignment at H-elongata_contig10343:1260..8639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10343.285.1 ID=mRNA_H-elongata_contig10343.285.1|Name=mRNA_H-elongata_contig10343.285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7380bp|location=Sequence derived from alignment at H-elongata_contig10343:1260..8639+ (Himanthalia elongata Himel1 dioecious)
GAGAAAGCTAGCTGCACTGGAAGCCACAACTTTGTGTGTACAATCGCTCT GTTCCACTTGACTGTACTAGAGAATCAAGGAGGAACAACTATTCTGCTTC GACCCACGGAGCTGCTCAAAGTTTCAAACGCTCGAGGGCTAAGCACGAAG CGTGGGGGACACCACGAAACTCACAGGAACCTCACACGGAACTCCAGTTA TAACTGGACCAAATTATTTGTCGGAAGGAGACCTTTAATTGTTTTTTCGA GAAGCTTTCCTCTGAAAGCAAGCTAGGGGTCTCTACGATAGCCGGAAATT ATTTCGGCCTACCGCTCTACCGGCTGAAATTGATATCGGGAGGGACGGGG TAAAGCAGCCTACAGCTACCATGCCGGACACGAATATAGCCGATAGTGCG CAGGCTAAAAGCCAGGTCGAGCCTTCTTCATCACTTGAAACGGTATCAAA GTTGGATCTTGAGCTGGAGAGGCACGGAGATACCTTAGGCACCATCAATA GTGCCGCATCTTCCGATTTTTTTAAGGGCAAAAACTCGCCCTCTGGCCTT GAGGGTACAGCAACTACGTTATCTTTGAGCGATGACCAAGACGGGACACT AGCTCCAAACGACTCGAAAGGGTTTCAAGGACTAGACACTCTCGGTGACA AAAAAGAAAGCGTCTTGACTGCCGTGGAGGAGCAACCTCCAGGTACTCTC TTGCAGGTTCAACACAACTCATGGAACTTGAGGCAGCAGCCCTCGAAAGT ACCACCGCCGTCGCTTTGGCCGCACCAGGTCTCGACCCGGGAAAAAGTGT CTCAACATGCTTCACCCAACGGCTCACAAGATTATTCGCGAGAGACTGCT GCTGCGGGAGCGACAAGAGAAACAAATAATGTTTGGGAGTCTTCGACGGT GGATGGCGTGGCTTGCCCAGCGTCTAGGTTTAACCCTCATCCCCAACAAG TGGACGCCACCGGTAGACAAGTTCAACCTTTGCAATATACCGATGCATGT GAAGCCTCCACAGCACACCTGAGAAGCGGACCACAGGACGTTGATGTTGT TGACGCGACCGGAAGAGGCAGAAAAGACTGGCAGGCTTCGCTTCCCCAGC GCTCTTCGTTTCACGCCGTCGGCTATCCGGCAGCGGAGATAGCTTATCCC TCGCGAAAGGCCGGACTTCCTCCTCGGCCAGGTTCATGGGAGGCGGGGAT TTCTAGTGAGTCGCGATTGGCAAGAATTGGGAAACAGGGTCAGCATTCCC CCCCCTTGAACTTCATGGCATCGTCAAGCAAGGTAGCAACGACGCGCGAA TCCAGGAATCTCTCTGCGCGTGCCGCTGCCGCTGCTGCTGCTGCTGCCGC GGTTCTGGGCCACGATTTTCGAGCAAAGAGCGAGTCAAACGTCGAGGCGC CGTTTCACAGCAGCCTCGCGCCGTCCACTCAGCGGGGCCAAGTTGCCGCT GTCGCTCCCATGGCTACCGTTAGTGGGTTCGACCCAGGATCCAGGGCTAC TCCCGGGAGGGCTCCAGGGAGGAGGAGGGCTTTCTTCGGGTCGAAGGAAG GATTGGCGCAGCGGAAGGGACACAAAATAATGAACTACTTGAAGGGATCG TTGACAACTGCTGGAGACGAACGTGCCAACGTCAGTTGTGTCACCATCGC CACGGTACGGACGGTTTTCTTGATGTTACGGTAATGCAATGGTGCTGCTG CTGCTGCTGATGTTGTTTTCGGTATTAGGTACAGCGGTTTTTGACTCGTG ACTCTTCATGTGTAATACACCTGCCGTGGTATACAGTACTTTACATCGTG TAAGGTTTTTCCTGTTGGCCCATCAACTACTCTCTTCCGTGGAAGAAGTC AAGTCCTGTCCGTACTACATGGCTGTTGTAGAGGTTTCTAATTAATACTG GTACTACTGTACTATACTACTATAATAACAACGACATAGTAGCACTGTAT ACAGTAGTAATTAAGTGTTTTATTTTAATTTTTAATGGCCGATGATTTGT TCGAGTTTTTTGTTACACGGGGCGCCGCCTCCGATCCTTTTGACTTTTGA CGATAATATACACTATTATATTACAATTACTACAATTACTAAAAGGCGTG GATATTCAATGTTCGGACGGGTTGGAATGAGAGTTCATGTTTTTTTAAAG ATTATTGGTCAGATATTGTCACTTGTCACTGACTTTTGTGTCAAATCCTG TCTCTGAGAAGTCCATTCTTCCAAGAATGTTATGGAACCATTGCGTTATA CCACAGTACGCCATTCATGATCGCTGTGCCCTTGGTGTTCCACCCTTCCT TGGTTATATACCCTCATGACCTTGCCGATCCAGTCGAACGACATCACCCA GCAGAGGATGCCAGCCCCGGACGCCGCCCATCGTGTCCGCACGCCCGCTT CCACGCCTGGGACGCGGAGGAAGGGTTCCACCCACTTTTCAACGCCCGGT GCGTGGAGGTCGAGGTCAGCATCTACACGGCGATCTGACTCCGCGATATT GCCGAATAACTTGGAAGCAGATGAAAAACATGAGCGAATCGCAGCGGCTC CGTCAGGTGTGCTGGGGACAGCTGTTGTAGCCGGAACCGAGACCCCCACG GATGGCGATGCCGGTCACACCCTCGCTCTCGCCGATAAAGGCGTGGTCGA TTATAAGAACGACGACAACGACATGCTTGAAGTGGATAAAAACATCGATG GCCACAATGCAGCGAGGTCGGATAGCCCTGCGGGAGCAGTTTGCGGCGAA GAAGAAAGGACTCCCGCAATGGAAGAAAAGGACGGGGGAGGCACCATTGC CGTCGCACCTGAGGATCTCGAAGAAGAGATTGATGAGAAGGAGGAGGAGC AGAAAGAGCAGGAGCTCGAAGCCGTGGTGTCAGAGAGCTGTTCGGTGCGT GTCATGGCGGGTGTTTGTTGGATGTGGAAAATGTGTCGTTTCCGTCTGGC AGTCTTTGGTTTAGCTTTTGATTTTTATATTTTTATTGTATAACATATGG AGTTTACTGTATAATTCAAAACCCTCGGAACACCCACACCTCCTTTGAGT TACATTAACTACCCGGTTTGTGCGCGACTGAGGAGCCCCCGTCCAACTGC CCAACCTGGCGCGCGTCTCATTCCTTTTATTCAATTTTGTTTCCAGTTTA CCGGGCTCCTGGAGTGTGCGTGTACCCTGCGGGTGGATGGTAAATTAGCG GGCGAGCTTGTGTCGACGGGTAGCGTGACCGTTGGTCGCACTGGAAGCAT TATCGGCGATCTGAGGAGCATCAAGTTTCTTCTGGTGGATGGTCAGGTAA AAAGTTCAAGTTCCCCCTTTGCCTCTGTCGTGGGTACGGTAGTATTGATA GTATTGATTCATCTTTGAAAAAGCATCATGGGGGTGCAGTCATTCAACCG TTTCTGGTTACTGGCTGGGTGCTGCACTTACTCTGTCCAATCCTTCCTTC CTTCGATGGCATGACCAACGATCGCACGATTCAACGATGTTTTCTTCTTG CTATCCTGATGCCTTTTAAAACCACAAAGCACCATTGTATTAGAATTAAA TACAACATCAATCGCAATTACAGATCGAAACAGTGCAGCAAGGGTACAGT GGACACTGTAGAGATTTTTGTACAGTACAGTAATGTCTAATGTTTTAGAG GAAGCGGTCGTTCTTGAGCATTACCACAGTGGTTGATTGTTGATTTCTCT CCTTGTGTGCATCAACATATTTCGAAAGGTGACAGGAAACGTATGGTGCG ATACCGTGGTCATCGGCGACGCGGGGAAAGTCTTCGGTAACATCACGTCC GAGTCCATCACCATAGGCCCCGAGGTTCGTATCGTGATAAGGTATATAGT ATACACTGTAAAGCACTGCTCTGCAACTAAGCTATGAAGGCTCCGATCTA TTATCCTGTATAGTTTTCCCTACAGTTTTGTATTGCCCCTTCTGCCGTCT GTCGTTTCATAGTATCCATAGTGCTATTAATATTGCTTTTAGACTAATTA TAGTGTTAAATGATATTGCCGTTAGTCTTAAAGTGGTACTAATATTTTGA GATTATATTAAAATAATAATATTGCCATTAGACTAATAATAGTGGTAATA ATATTTTGATGTTTTCCGTTTGTCTAATAGTGCTATTAAAATAATTTTGC CCTTAGTCTAATAGTGCTATTATGTTGCTTTTAAACTAATAGTGGTAATA ATATTGCCGTTAGTCTAAAAGTGGTAATAATATTTTAATGTTTTCCGTTA GTCTAATAGTGCTATTATGTTGCTTAGTCTAATAATACTTGTAGTGATAA TAATATTGCCGTTAGTCTAATATTACTAGTATTTTTGTTCTCTCGTGGTT CCGCAAATTCCCAAATCATGTCCATGCTACGCGATCTCTCTCGGCGACCC GGGGATGATAGGCTCCGCACCCCAGCTCGATAGTATTAAATCATTATAAA ACCTACCGGTACATTAGTGATCAATATTTTGCTTTCGAAAGGCGCAAGCA CGAAAGAAATCGCTTCGTTTCGATCCTAGATTGTCTTCCTGACGGATTTC CGTTGAAACAGACTATTACTAATACTAATACTATTACTAAATTACTAGCT ATTTATACAGGCTGTTCTAGAGGGGTGTGGGTTTTTAATCTTACATTCTT AGATACAGTACGAGATTGCGACAAACATGCTTGGACTAGGAGGCAACCGA TATGCGCGTCTTTCGCAAGTTAATCGAAAAACACCTTCTTATTGACATTA TACATTATATACTCGATAAGACTTCGACTTTATTTGATAAAAATATTTCT TCTTGTGTGTGTTTTTTTTGTCCAGGCCATGATGCGAGGAAAGCTTGACG TCGTGGAAAACATCTCCGAGGCCCGAGCTCACGCCTTTGCCCAAGACGAA ATCCGACCCTTGATGAAGGAGGAGGAGGAGGAGGTCGAATCCGTCGAATC CAAGACGCCGCAAGACAGCCTTAAGGCAAAGCCAGGTGTTAAGTGCGTAG CTACGGATGTCGAAGCCAGGGCTGGTGATTCACACAACGAAGCTGAGTTG GATGCAGCAAAGGGGGTTTCGGTCACTGGAGCGGAGGGAAAAGGGTGTAA CAGCCAGGAGCGAGAGATGCAAGATTGTGTTTCTCCGGCTTTCGCTGAGG AGGGAGAAGCCAAGAATGACGTCATCGATACCGTCGACGCAGCGGGGAAT GCCAGGTCCGCAAAAGCAGATGCGGGGATCGCCATGGTTGACTCGAGGGC CGCGGAAGTTGACCTTTCGGACAGTCGACTGATGATGGGACAAGCGGTGG CTGGGGCAAGCGAAGGGTCGGTAGTGGGCGCCAGTAGCACCGAGCCCAGA CACTCAGACCAACAGGAGAAAAGAGAAGACCTCTGAGGAGCAGCGGCATG CGCGCCCAGGACCCTCGCACAGACGATCCGGTTGGGTCTCTTCATCCCAG CGACACGTATCACGCGTCGTCAGGAAGCGACAGAAGTTTGGACGTCCGCG TGCCTGGGAAACGAATCAGCAACAGCTCAACGATGCCGACCAGCTTGAGC GTCAAGAATTTTCCTATATCCTGTCCTATAGCCCCTTTATCATATCCTCG GTAAACAGTAAACAGTAAACAGTCGGCGACCTAAAAAAGTATGACGGGAG GAAATCAAAAACCCATTCGATGACGCAGGTAACAATTTTGGGGCTGATCG TACATTAAGGCTTGGCTTGGCCTTGATTTGATTTGATGTATTTGGCTTGG CGGTTGAAATTGACAAACACTGCTCTGCCCAAATTCCGCATGATAAGAGT CCTCGTAGATGGAGTGGAGTAGAGTGGAGTGCCTCGTTGGAGGAAATATG ATTTTGAGTGCCATGTATCGCTGCTTTCTGGATATTTTTTACCTCATTTT TCAGCGTTTCCCCGCCCAGAGTAGTTGTGAAAAGCGTTCGACTCTCGTGG TATCGCAGACGTCGGTTCCTTCGTGTTTTAAGTGTTCCCCTCTCAGCCTG AAGCGTTGCTTCGCTCCGCCTTTTATGCTCCTCAGAGGTGCGCTTGCTCT GTCTGCGCTGTCCCCGAATCCGATCAATTTTTATATTTATTTTCCAATAC GATTTGATTGTACTTGTTTATGTTTACTTTAGGGTAGCAGGGAGCATAGC AGAGCAGTAGCCAGCTGTTTCATGTGCATACGTTTTTGTTATTCTTTCGA GTCCGTAGTGCGTCCACCCAGCAACCCGTCTTAGATCCCGTCGTGCCTCT TGAGCCGACGTAATTTGTCAATTTTCGATTACTGCCAACAGTGATGAGGG TGGCCGTAACGGGCGGGTTAAGCCTCTCACAGAATCATATCATGTCATGT AGTGGTTTGTGTTTTGGTTCATTTTTTTCAAAACTCCGTACTCTGTTTCG ACAGCGATCGACTAATCGATCAGATTAATGACTCGATTTCACCATAGGGT CCATAGGGTGTGGATCCTACTCAAAACATTTATCAAGTAAAAATGTTTTC TAGTACAGTATAGTATAGGGGTACTGTAATAATGAAAACGCTTGGTGAAA ATTGGCTGTATGTACTGTAGTCGACTGACTGTTTAAGGCTTGCGAGATAA TTGAAATGTCTCTCGATCGAGTAAAGCTTGATGAGAAATGTCTTTTAAAT AATCGATTGATTGTCCGAAACATGAATGGAGTAAAAAGTTTTATATCGGT ATCATAAAAACGCTTGGTAAAAATTGGATGGATGTAGTCGATTGGTTAAG GCTTGGGAAATAATGGAAATGTTTCAAGCTGTTGACGAGAAAAATAAATG TCTTAAGTTGATTGTTGAAAGCATTTATGAAGTGAAAAGTATATTATTTC GGTATCATAAAAAACGCTTGGATGAAAAATGTATATATGTCTGTAGCCGA TTAGTTAAGGCTTGGGAGATAATTGAAATGTCTCGGCTGATCGTCGATTG TCGATTGGTTAAGGCTTGATTGATGAGAAAGAGAAGATGTCTCACTCGAT TGTCGATTGGTTTTCCGTAGTATTGGGAGGCTCAACGTACAAAATGCAGA GTGTTGTGTAAAGCGATGGTTCTTCTGTAATGAAGTGAAAAGTGACCTGG TCACTTCTTTCGGCCAATTAGGATTCAAGATGATTGCAGTAGATGTTCGA TGTTCTCGAGCAACTGGAATGGATGTGGATATGATTGCAGTAGATTGACT TGACTGCTAATGAAGTTCATCGCATGAGCACAGGATGCTGTCATCGTTTC TACAAAATTGACATAAAGGATTGCCTCCCATTGTCATTAAAAACTGTATT GTCTCTCAATAATCGAGGATCGAGGATATGAGGATATTCCGAGGTTGCAA CACCTTTGAGCTGCAGTGTGACAGGAGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig10343:1260..8639+

>mRNA_H-elongata_contig10343.285.1 ID=mRNA_H-elongata_contig10343.285.1|Name=mRNA_H-elongata_contig10343.285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5304bp|location=Sequence derived from alignment at H-elongata_contig10343:1260..8639+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGACACGAATATAGCCGATAGTGCGCAGGCTAAAAGCCAGGTCGA
GCCTTCTTCATCACTTGAAACGGTATCAAAGTTGGATCTTGAGCTGGAGA
GGCACGGAGATACCTTAGGCACCATCAATAGTGCCGCATCTTCCGATTTT
TTTAAGGGCAAAAACTCGCCCTCTGGCCTTGAGGGTACAGCAACTACGTT
ATCTTTGAGCGATGACCAAGACGGGACACTAGCTCCAAACGACTCGAAAG
GGTTTCAAGGACTAGACACTCTCGGTGACAAAAAAGAAAGCGTCTTGACT
GCCGTGGAGGAGCAACCTCCAGGTACTCTCTTGCAGGTTCAACACAACTC
ATGGAACTTGAGGCAGCAGCCCTCGAAAGTACCACCGCCGTCGCTTTGGC
CGCACCAGGTCTCGACCCGGGAAAAAGTGTCTCAACATGCTTCACCCAAC
GGCTCACAAGATTATTCGCGAGAGACTGCTGCTGCGGGAGCGACAAGAGA
AACAAATAATGTTTGGGAGTCTTCGACGGTGGATGGCGTGGCTTGCCCAG
CGTCTAGGTTTAACCCTCATCCCCAACAAGTGGACGCCACCGGTAGACAA
GTTCAACCTTTGCAATATACCGATGCATGTGAAGCCTCCACAGCACACCT
GAGAAGCGGACCACAGGACGTTGATGTTGTTGACGCGACCGGAAGAGGCA
GAAAAGACTGGCAGGCTTCGCTTCCCCAGCGCTCTTCGTTTCACGCCGTC
GGCTATCCGGCAGCGGAGATAGCTTATCCCTCGCGAAAGGCCGGACTTCC
TCCTCGGCCAGGTTCATGGGAGGCGGGGATTTCTAGTGAGTCGCGATTGG
CAAGAATTGGGAAACAGGGTCAGCATTCCCCCCCCTTGAACTTCATGGCA
TCGTCAAGCAAGGTAGCAACGACGCGCGAATCCAGGAATCTCTCTGCGCG
TGCCGCTGCCGCTGCTGCTGCTGCTGCCGCGGTTCTGGGCCACGATTTTC
GAGCAAAGAGCGAGTCAAACGTCGAGGCGCCGTTTCACAGCAGCCTCGCG
CCGTCCACTCAGCGGGGCCAAGTTGCCGCTGTCGCTCCCATGGCTACCGT
TAGTGGGTTCGACCCAGGATCCAGGGCTACTCCCGGGAGGGCTCCAGGGA
GGAGGAGGGCTTTCTTCGGGTCGAAGGAAGGATTGGCGCAGCGGAAGGGA
CACAAAATAATGAACTACTTGAAGGGATCGTTGACAACTGCTGGAGACGA
ACGTGCCAACGTCAGTTGTGTCACCATCGCCACGATGCCGGACACGAATA
TAGCCGATAGTGCGCAGGCTAAAAGCCAGGTCGAGCCTTCTTCATCACTT
GAAACGGTATCAAAGTTGGATCTTGAGCTGGAGAGGCACGGAGATACCTT
AGGCACCATCAATAGTGCCGCATCTTCCGATTTTTTTAAGGGCAAAAACT
CGCCCTCTGGCCTTGAGGGTACAGCAACTACGTTATCTTTGAGCGATGAC
CAAGACGGGACACTAGCTCCAAACGACTCGAAAGGGTTTCAAGGACTAGA
CACTCTCGGTGACAAAAAAGAAAGCGTCTTGACTGCCGTGGAGGAGCAAC
CTCCAGGTACTCTCTTGCAGGTTCAACACAACTCATGGAACTTGAGGCAG
CAGCCCTCGAAAGTACCACCGCCGTCGCTTTGGCCGCACCAGGTCTCGAC
CCGGGAAAAAGTGTCTCAACATGCTTCACCCAACGGCTCACAAGATTATT
CGCGAGAGACTGCTGCTGCGGGAGCGACAAGAGAAACAAATAATGTTTGG
GAGTCTTCGACGGTGGATGGCGTGGCTTGCCCAGCGTCTAGGTTTAACCC
TCATCCCCAACAAGTGGACGCCACCGGTAGACAAGTTCAACCTTTGCAAT
ATACCGATGCATGTGAAGCCTCCACAGCACACCTGAGAAGCGGACCACAG
GACGTTGATGTTGTTGACGCGACCGGAAGAGGCAGAAAAGACTGGCAGGC
TTCGCTTCCCCAGCGCTCTTCGTTTCACGCCGTCGGCTATCCGGCAGCGG
AGATAGCTTATCCCTCGCGAAAGGCCGGACTTCCTCCTCGGCCAGGTTCA
TGGGAGGCGGGGATTTCTAGTGAGTCGCGATTGGCAAGAATTGGGAAACA
GGGTCAGCATTCCCCCCCCTTGAACTTCATGGCATCGTCAAGCAAGGTAG
CAACGACGCGCGAATCCAGGAATCTCTCTGCGCGTGCCGCTGCCGCTGCT
GCTGCTGCTGCCGCGGTTCTGGGCCACGATTTTCGAGCAAAGAGCGAGTC
AAACGTCGAGGCGCCGTTTCACAGCAGCCTCGCGCCGTCCACTCAGCGGG
GCCAAGTTGCCGCTGTCGCTCCCATGGCTACCGTTAGTGGGTTCGACCCA
GGATCCAGGGCTACTCCCGGGAGGGCTCCAGGGAGGAGGAGGGCTTTCTT
CGGGTCGAAGGAAGGATTGGCGCAGCGGAAGGGACACAAAATAATGAACT
ACTTGAAGGGATCGTTGACAACTGCTGGAGACGAACGTGCCAACGTCAGT
TGTGTCACCATCGCCACGTCGAACGACATCACCCAGCAGAGGATGCCAGC
CCCGGACGCCGCCCATCGTGTCCGCACGCCCGCTTCCACGCCTGGGACGC
GGAGGAAGGGTTCCACCCACTTTTCAACGCCCGGTGCGTGGAGGTCGAGG
TCAGCATCTACACGGCGATCTGACTCCGCGATATTGCCGAATAACTTGGA
AGCAGATGAAAAACATGAGCGAATCGCAGCGGCTCCGTCAGGTGTGCTGG
GGACAGCTGTTGTAGCCGGAACCGAGACCCCCACGGATGGCGATGCCGGT
CACACCCTCGCTCTCGCCGATAAAGGCGTGGTCGATTATAAGAACGACGA
CAACGACATGCTTGAAGTGGATAAAAACATCGATGGCCACAATGCAGCGA
GGTCGGATAGCCCTGCGGGAGCAGTTTGCGGCGAAGAAGAAAGGACTCCC
GCAATGGAAGAAAAGGACGGGGGAGGCACCATTGCCGTCGCACCTGAGGA
TCTCGAAGAAGAGATTGATGAGAAGGAGGAGGAGCAGAAAGAGCAGGAGC
TCGAAGCCGTGGTGTCAGAGAGCTGTTCGTCGAACGACATCACCCAGCAG
AGGATGCCAGCCCCGGACGCCGCCCATCGTGTCCGCACGCCCGCTTCCAC
GCCTGGGACGCGGAGGAAGGGTTCCACCCACTTTTCAACGCCCGGTGCGT
GGAGGTCGAGGTCAGCATCTACACGGCGATCTGACTCCGCGATATTGCCG
AATAACTTGGAAGCAGATGAAAAACATGAGCGAATCGCAGCGGCTCCGTC
AGGTGTGCTGGGGACAGCTGTTGTAGCCGGAACCGAGACCCCCACGGATG
GCGATGCCGGTCACACCCTCGCTCTCGCCGATAAAGGCGTGGTCGATTAT
AAGAACGACGACAACGACATGCTTGAAGTGGATAAAAACATCGATGGCCA
CAATGCAGCGAGGTCGGATAGCCCTGCGGGAGCAGTTTGCGGCGAAGAAG
AAAGGACTCCCGCAATGGAAGAAAAGGACGGGGGAGGCACCATTGCCGTC
GCACCTGAGGATCTCGAAGAAGAGATTGATGAGAAGGAGGAGGAGCAGAA
AGAGCAGGAGCTCGAAGCCGTGGTGTCAGAGAGCTGTTCGTTTACCGGGC
TCCTGGAGTGTGCGTGTACCCTGCGGGTGGATGGTAAATTAGCGGGCGAG
CTTGTGTCGACGGGTAGCGTGACCGTTGGTCGCACTGGAAGCATTATCGG
CGATCTGAGGAGCATCAAGTTTCTTCTGGTGGATGGTCAGTTTACCGGGC
TCCTGGAGTGTGCGTGTACCCTGCGGGTGGATGGTAAATTAGCGGGCGAG
CTTGTGTCGACGGGTAGCGTGACCGTTGGTCGCACTGGAAGCATTATCGG
CGATCTGAGGAGCATCAAGTTTCTTCTGGTGGATGGTCAGGTGACAGGAA
ACGTATGGTGCGATACCGTGGTCATCGGCGACGCGGGGAAAGTCTTCGGT
AACATCACGTCCGAGTCCATCACCATAGGCCCCGAGGTGACAGGAAACGT
ATGGTGCGATACCGTGGTCATCGGCGACGCGGGGAAAGTCTTCGGTAACA
TCACGTCCGAGTCCATCACCATAGGCCCCGAGGCCATGATGCGAGGAAAG
CTTGACGTCGTGGAAAACATCTCCGAGGCCCGAGCTCACGCCTTTGCCCA
AGACGAAATCCGACCCTTGATGAAGGAGGAGGAGGAGGAGGTCGAATCCG
TCGAATCCAAGACGCCGCAAGACAGCCTTAAGGCAAAGCCAGGTGTTAAG
TGCGTAGCTACGGATGTCGAAGCCAGGGCTGGTGATTCACACAACGAAGC
TGAGTTGGATGCAGCAAAGGGGGTTTCGGTCACTGGAGCGGAGGGAAAAG
GGTGTAACAGCCAGGAGCGAGAGATGCAAGATTGTGTTTCTCCGGCTTTC
GCTGAGGAGGGAGAAGCCAAGAATGACGTCATCGATACCGTCGACGCAGC
GGGGAATGCCAGGTCCGCAAAAGCAGATGCGGGGATCGCCATGGTTGACT
CGAGGGCCGCGGAAGTTGACCTTTCGGACAGTCGACTGATGATGGGACAA
GCGGTGGCTGGGGCAAGCGAAGGGTCGGTAGTGGGCGCCAGTAGCACCGA
GCCCAGACACTCAGACCAACAGGAGAAAAGAGAAGACCTCTGAGCCATGA
TGCGAGGAAAGCTTGACGTCGTGGAAAACATCTCCGAGGCCCGAGCTCAC
GCCTTTGCCCAAGACGAAATCCGACCCTTGATGAAGGAGGAGGAGGAGGA
GGTCGAATCCGTCGAATCCAAGACGCCGCAAGACAGCCTTAAGGCAAAGC
CAGGTGTTAAGTGCGTAGCTACGGATGTCGAAGCCAGGGCTGGTGATTCA
CACAACGAAGCTGAGTTGGATGCAGCAAAGGGGGTTTCGGTCACTGGAGC
GGAGGGAAAAGGGTGTAACAGCCAGGAGCGAGAGATGCAAGATTGTGTTT
CTCCGGCTTTCGCTGAGGAGGGAGAAGCCAAGAATGACGTCATCGATACC
GTCGACGCAGCGGGGAATGCCAGGTCCGCAAAAGCAGATGCGGGGATCGC
CATGGTTGACTCGAGGGCCGCGGAAGTTGACCTTTCGGACAGTCGACTGA
TGATGGGACAAGCGGTGGCTGGGGCAAGCGAAGGGTCGGTAGTGGGCGCC
AGTAGCACCGAGCCCAGACACTCAGACCAACAGGAGAAAAGAGAAGACCT
CTGA
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