mRNA_H-elongata_contig103417.284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103417.284.1
Unique NamemRNA_H-elongata_contig103417.284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.840e-56
Identity = 93/113 (82.30%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    4 RVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
            R+GKRGAPQAFARKL EIL TES   I+WN +G+AF V DV+ FS + LTKYYRHSKFSSFQRQLNLYSFRKIVKG DAGGYAHPMF RDRPDDLYHVRRSISGS RYEPAAA
Sbjct:   33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYEPAAA 145
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: D8LDA5_ECTSI (Putative Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA5_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.410e-51
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   28 QAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
            +AFARKL EILTTES   I+WN +G+AF V DV+ FS + LTKYYRHSKFSSFQRQLNLYSFRKIVKG DAGGYAHPMF RDRPDDLYHVRRSISGS RYEPAAA
Sbjct:   12 EAFARKLAEILTTESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYEPAAA 116
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 143 bits (361), Expect = 6.510e-39
Identity = 71/114 (62.28%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
            PR G+RGAPQAFARKLYEIL  E   +++WN  G AF VRD+D FS E L KY+RHSKF+SFQRQLNLY FRKI +G DAG YAH  F + +PD L  VRRS S S    P  A
Sbjct:    4 PRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSSPSPPHPA 117
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.030e-36
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRY 327
            PR G+RGAPQ F RKLYEIL+TE + +I W + G +F ++++++F    L KY+RH K+SSFQRQLNLY FRK+ KG D G YAH  F RD+P+ L  VRR    +G +
Sbjct:    4 PRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRRIPQSAGAF 112
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.780e-36
Identity = 65/110 (59.09%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYE 330
            PR G+RGAPQ F RKLYEILT ES  +I+W E+GT+F ++++D F  E L KY+RH K+SSFQRQLNLY FRKI KGPD G YAH  F RD    L  VRR    +GR +
Sbjct:   74 PRTGRRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKIQKGPDTGAYAHEGFLRDDESQLVKVRRWAQSAGRQQ 183
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK)

HSP 1 Score: 135 bits (339), Expect = 8.390e-36
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRY 327
            PR G RGAPQ FARKLY+IL TES+ VI WNE GTAF ++D+D FS E L KY+RH+ +SSFQRQ+NLY F+KI +GP AG   H  F R RPD L  V+R    S  +
Sbjct:   11 PRTGSRGAPQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFKKISRGPFAGANMHQQFLRGRPDLLVMVKRKPRSSSPF 119
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.290e-35
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRR 303
            PR G+RGAPQ F RKLYEILT E   VI W   G +F + +++ F  E L  Y+RH K+SSFQRQLNLY FRKI KGPD G YAH  F RD+P+ L  VRR
Sbjct:   96 PRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.560e-34
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGR 324
            PR GKRGAPQ F RKLYEIL  ES+  I+W E G +F ++D+++F    L KY+RH KFSSFQRQLNLY FRKI KG + G Y H  F RD+ D L  VRR+   +GR
Sbjct:   66 PRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRTPQVTGR 173
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BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.760e-34
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRS 306
            PR GKRGAPQAFA KLYEIL  ES  VIAW+  G AF ++D+D F  + L KY+RH K+SSFQRQLNLY FRK  KG D GGY H  F R R D L  VRR+
Sbjct:   74 PRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT 175
[Close]
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.530e-33
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    1 PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETLTKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVRRSISGSGRYEPAAA 342
            PR GKRGAPQ FARKLYEIL  E    I+W   GT+F ++++D+F    L KY+RH K+SSFQRQLNLY FRKI KG DAG YAH  F R +P+ L+ VRR    S    P  A
Sbjct:  158 PRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSSSSPVPPVA 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103417.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMN3_9PHAE1.840e-5682.30HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D8LDA5_ECTSI6.410e-5181.90Putative Heat Shock transcription factor n=1 Tax=E... [more]
A0A6V1QFS1_HETAK6.510e-3962.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BSE7_9STRA1.030e-3653.21Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CXJ7_9STRA3.780e-3659.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6V2VRS5_HETAK8.390e-3658.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G7U9_9STRA8.290e-3559.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2R5C8_9STRA3.560e-3457.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WKC6_9STRA5.760e-3462.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WU52_9STRA1.530e-3356.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103417contigH-elongata_contig103417:687..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2850.Phatr43051
Preferred nameSFL1
GOsGO:0000122,GO:0000128,GO:0000228,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001085,GO:0001103,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009268,GO:0009405,GO:0009607,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016458,GO:0019219,GO:0019222,GO:0030308,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036244,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043900,GO:0043901,GO:0044182,GO:0044212,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0060256,GO:0060257,GO:0060258,GO:0065007,GO:0070013,GO:0070491,GO:0070784,GO:0070785,GO:0070887,GO:0071214,GO:0071467,GO:0080090,GO:0097159,GO:0098630,GO:0098743,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1900460,GO:1900462,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000217,GO:2000218,GO:2000220,GO:2000221,GO:2001141
EggNOG free text desc.heat shock factor
EggNOG OGs2XHAM@2836,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.4070518-CDS-H-elongata_contig103417:686..10281622929569.4070518-CDS-H-elongata_contig103417:686..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103417 687..1028 +
1691679074.4297574-CDS-H-elongata_contig103417:686..10281691679074.4297574-CDS-H-elongata_contig103417:686..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103417 687..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103417.284.1prot_H-elongata_contig103417.284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103417 687..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103417.284.1

>prot_H-elongata_contig103417.284.1 ID=prot_H-elongata_contig103417.284.1|Name=mRNA_H-elongata_contig103417.284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
PRVGKRGAPQAFARKLYEILTTESQGVIAWNEDGTAFHVRDVDSFSVETL
TKYYRHSKFSSFQRQLNLYSFRKIVKGPDAGGYAHPMFHRDRPDDLYHVR
RSISGSGRYEPAAA
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mRNA from alignment at H-elongata_contig103417:687..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103417.284.1 ID=mRNA_H-elongata_contig103417.284.1|Name=mRNA_H-elongata_contig103417.284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig103417:687..1028+ (Himanthalia elongata Himel1 dioecious)
CCGCGAGTAGGAAAACGAGGCGCCCCCCAAGCCTTTGCCCGCAAGCTTTA
TGAGATCCTCACGACAGAGTCTCAAGGGGTGATCGCCTGGAATGAAGATG
GCACGGCATTTCACGTTAGAGACGTGGACAGCTTCAGCGTGGAGACGCTG
ACCAAGTACTACCGTCACTCCAAATTCTCCAGCTTTCAGCGGCAGCTTAA
CCTCTACTCGTTTCGCAAGATCGTCAAGGGCCCCGATGCTGGCGGCTACG
CCCATCCGATGTTTCACCGAGACAGACCGGACGACCTATACCATGTCCGG
CGCTCCATCTCGGGTTCTGGTCGGTATGAACCCGCCGCTGCA
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Coding sequence (CDS) from alignment at H-elongata_contig103417:687..1028+

>mRNA_H-elongata_contig103417.284.1 ID=mRNA_H-elongata_contig103417.284.1|Name=mRNA_H-elongata_contig103417.284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig103417:687..1028+ (Himanthalia elongata Himel1 dioecious)
CCGCGAGTAGGAAAACGAGGCGCCCCCCAAGCCTTTGCCCGCAAGCTTTA
TGAGATCCTCACGACAGAGTCTCAAGGGGTGATCGCCTGGAATGAAGATG
GCACGGCATTTCACGTTAGAGACGTGGACAGCTTCAGCGTGGAGACGCTG
ACCAAGTACTACCGTCACTCCAAATTCTCCAGCTTTCAGCGGCAGCTTAA
CCTCTACTCGTTTCGCAAGATCGTCAAGGGCCCCGATGCTGGCGGCTACG
CCCATCCGATGTTTCACCGAGACAGACCGGACGACCTATACCATGTCCGG
CGCTCCATCTCGGGTTCTGGTCGGTATGAACCCGCCGCTGCACCGCGAGT
AGGAAAACGAGGCGCCCCCCAAGCCTTTGCCCGCAAGCTTTATGAGATCC
TCACGACAGAGTCTCAAGGGGTGATCGCCTGGAATGAAGATGGCACGGCA
TTTCACGTTAGAGACGTGGACAGCTTCAGCGTGGAGACGCTGACCAAGTA
CTACCGTCACTCCAAATTCTCCAGCTTTCAGCGGCAGCTTAACCTCTACT
CGTTTCGCAAGATCGTCAAGGGCCCCGATGCTGGCGGCTACGCCCATCCG
ATGTTTCACCGAGACAGACCGGACGACCTATACCATGTCCGGCGCTCCAT
CTCGGGTTCTGGTCGGTATGAACCCGCCGCTGCA
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